Wall clock time and date at job start Thu Apr 9 2020 12:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47342 * 2 1 4 4 C 1.50704 * 109.47130 * 239.99753 * 2 1 3 5 5 H 1.08000 * 120.00173 * 242.01885 * 4 2 1 6 6 C 1.37875 * 119.99880 * 62.01542 * 4 2 1 7 7 N 1.31523 * 119.99768 * 6.33889 * 6 4 2 8 8 Si 1.86799 * 120.00057 * 186.33992 * 6 4 2 9 9 H 1.48493 * 109.47336 * 94.99262 * 8 6 4 10 10 H 1.48509 * 109.46976 * 214.99312 * 8 6 4 11 11 H 1.48493 * 109.46910 * 334.99042 * 8 6 4 12 12 C 1.50704 * 109.47305 * 120.00209 * 2 1 3 13 13 O 1.21274 * 120.00104 * 90.24684 * 12 2 1 14 14 N 1.34774 * 119.99664 * 269.97628 * 12 2 1 15 15 C 1.47029 * 125.65249 * 4.96593 * 14 12 2 16 16 C 1.54309 * 107.28029 * 180.97037 * 15 14 12 17 17 C 1.55163 * 102.85969 * 22.52764 * 16 15 14 18 18 H 1.09001 * 111.00499 * 82.38254 * 17 16 15 19 19 C 1.53004 * 111.03632 * 206.21205 * 17 16 15 20 20 H 1.08999 * 109.46723 * 52.21349 * 19 17 16 21 21 C 1.53000 * 109.47339 * 292.22054 * 19 17 16 22 22 N 1.46900 * 109.47109 * 172.21543 * 19 17 16 23 23 C 1.47429 * 125.64947 * 185.28029 * 14 12 2 24 24 H 1.09009 * 109.47262 * 296.97796 * 1 2 3 25 25 H 1.09002 * 109.47395 * 56.97652 * 1 2 3 26 26 H 1.08998 * 109.47461 * 176.98266 * 1 2 3 27 27 H 0.97002 * 119.99695 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.87872 * 300.51884 * 15 14 12 29 29 H 1.09003 * 109.87859 * 61.67814 * 15 14 12 30 30 H 1.08995 * 110.92786 * 264.11555 * 16 15 14 31 31 H 1.08999 * 110.74072 * 140.85299 * 16 15 14 32 32 H 1.08996 * 109.47035 * 180.02562 * 21 19 17 33 33 H 1.09009 * 109.46886 * 299.99853 * 21 19 17 34 34 H 1.08999 * 109.47572 * 59.99613 * 21 19 17 35 35 H 1.00899 * 110.99463 * 180.02562 * 22 19 17 36 36 H 1.00898 * 110.99906 * 303.95255 * 22 19 17 37 37 H 1.09005 * 110.36355 * 274.67049 * 23 14 12 38 38 H 1.09004 * 110.36176 * 36.88386 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6260 -1.6072 -1.1317 6 6 1.7338 -0.2157 -2.4823 7 7 1.1190 0.9407 -2.6029 8 14 2.2027 -1.1878 -4.0070 9 1 1.0462 -2.0098 -4.4450 10 1 2.5836 -0.2503 -5.0940 11 1 3.3510 -2.0757 -3.6941 12 6 2.0323 -0.7105 1.2305 13 8 2.2387 -1.9051 1.1991 14 7 2.2574 -0.0172 2.3641 15 6 1.9596 1.4077 2.5707 16 6 2.4064 1.7663 4.0035 17 6 3.4550 0.6683 4.3233 18 1 4.4292 0.9252 3.9072 19 6 3.5529 0.4246 5.8306 20 1 2.5576 0.2378 6.2338 21 6 4.1545 1.6572 6.5085 22 7 4.4105 -0.7410 6.0835 23 6 2.8490 -0.5605 3.6004 24 1 -0.3634 0.4662 0.9159 25 1 -0.3634 0.5601 -0.8616 26 1 -0.3634 -1.0262 -0.0541 27 1 0.9087 1.2886 -3.4836 28 1 2.5093 2.0099 1.8473 29 1 0.8889 1.5819 2.4638 30 1 1.5679 1.7126 4.6977 31 1 2.8638 2.7554 4.0290 32 1 4.2246 1.4834 7.5822 33 1 5.1498 1.8442 6.1053 34 1 3.5182 2.5221 6.3208 35 1 4.4907 -0.9229 7.0727 36 1 4.0694 -1.5541 5.5931 37 1 2.0789 -1.0225 4.2182 38 1 3.6280 -1.2846 3.3617 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340260589.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:01 Heat of formation + Delta-G solvation = -50.885762 kcal Electronic energy + Delta-G solvation = -17790.671347 eV Core-core repulsion = 15053.243517 eV Total energy + Delta-G solvation = -2737.427830 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.60470 -37.58397 -35.12092 -33.67937 -31.11943 -30.31238 -28.73787 -28.48981 -25.14609 -23.97830 -22.08666 -21.55717 -19.87194 -18.48490 -16.47146 -16.35961 -15.99862 -15.29084 -14.94002 -14.74037 -14.18113 -13.75887 -13.50793 -13.18171 -12.66370 -12.32145 -12.27247 -12.09520 -11.91288 -11.74271 -11.43834 -11.00204 -10.94009 -10.74976 -10.65477 -10.64360 -10.57885 -10.25025 -10.00331 -8.99968 -8.85266 -8.54509 -8.32019 -7.99175 -6.04308 -4.04744 3.34681 3.40640 3.46645 3.69309 3.74777 4.24189 4.48417 4.59391 4.65750 4.87324 5.17394 5.23563 5.26954 5.31420 5.50881 5.57251 5.67747 5.79880 5.81828 5.87729 6.03610 6.06769 6.15648 6.23503 6.34095 6.65493 6.86164 6.92946 6.98489 7.02148 7.27599 7.49110 7.71930 7.98380 8.14576 8.43674 9.00643 9.24710 9.59188 11.05352 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.043317 B = 0.005379 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.245469 B = 5204.223808 C = 5452.671428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.035 3.965 3 H 0.049 0.951 4 C -0.501 4.501 5 H 0.068 0.932 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.538 3.462 13 O -0.548 6.548 14 N -0.632 5.632 15 C 0.106 3.894 16 C -0.125 4.125 17 C -0.096 4.096 18 H 0.091 0.909 19 C 0.099 3.901 20 H 0.036 0.964 21 C -0.144 4.144 22 N -0.848 5.848 23 C 0.110 3.890 24 H 0.012 0.988 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.261 0.739 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.338 0.662 36 H 0.344 0.656 37 H 0.051 0.949 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 3.985 16.504 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.014 3.986 3 H 0.067 0.933 4 C -0.540 4.540 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.330 3.670 13 O -0.424 6.424 14 N -0.369 5.369 15 C -0.017 4.017 16 C -0.164 4.164 17 C -0.115 4.115 18 H 0.109 0.891 19 C -0.012 4.012 20 H 0.054 0.946 21 C -0.202 4.202 22 N -0.379 5.379 23 C -0.014 4.014 24 H 0.032 0.968 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.151 0.849 36 H 0.158 0.842 37 H 0.069 0.931 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.809 3.832 15.891 16.585 hybrid contribution -0.693 -0.816 -0.368 1.132 sum 2.116 3.016 15.523 15.954 Atomic orbital electron populations 1.21621 0.96472 1.00322 0.99834 1.18844 0.93973 0.96858 0.88916 0.93333 1.21058 1.32984 1.10797 0.89112 0.91369 1.24929 0.95231 0.94825 0.99020 1.69935 1.42048 1.17727 1.23620 0.86463 0.78924 0.79845 0.82166 1.20628 1.21276 1.19718 1.21807 0.75072 0.87235 0.82887 1.90531 1.52297 1.15750 1.83854 1.48801 1.64564 1.10572 1.12934 1.21913 1.00736 0.82947 0.96122 1.22701 0.98515 0.98917 0.96246 1.22440 0.99629 0.95430 0.94048 0.89073 1.21258 0.94041 0.91575 0.94350 0.94622 1.21815 1.01785 0.96855 0.99757 1.58741 1.56206 1.08037 1.14946 1.22062 0.96887 0.95996 0.86417 0.96847 0.89898 0.94550 0.92950 0.91136 0.91583 0.90936 0.90128 0.93018 0.91742 0.91974 0.84920 0.84228 0.93050 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.01 8.93 37.15 0.33 -2.68 16 2 C 0.04 0.91 2.10 -92.92 -0.20 0.71 16 3 H 0.05 1.27 7.08 -51.93 -0.37 0.91 16 4 C -0.50 -14.55 8.31 -34.44 -0.29 -14.83 16 5 H 0.07 2.09 7.12 -52.49 -0.37 1.71 16 6 C 0.06 1.72 5.25 -17.82 -0.09 1.63 16 7 N -0.89 -25.43 11.78 55.43 0.65 -24.78 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 12 C 0.54 13.05 6.89 -10.98 -0.08 12.97 16 13 O -0.55 -15.04 16.23 5.56 0.09 -14.95 16 14 N -0.63 -12.06 3.33 -170.52 -0.57 -12.62 16 15 C 0.11 1.63 6.26 -3.07 -0.02 1.61 16 16 C -0.13 -1.40 5.66 -24.90 -0.14 -1.54 16 17 C -0.10 -1.15 2.75 -88.47 -0.24 -1.40 16 18 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 19 C 0.10 0.97 2.96 -67.71 -0.20 0.77 16 20 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 21 C -0.14 -1.21 9.35 37.16 0.35 -0.86 16 22 N -0.85 -8.18 9.24 -4.67 -0.04 -8.22 16 23 C 0.11 1.71 5.34 -2.53 -0.01 1.70 16 24 H 0.01 0.27 7.70 -51.92 -0.40 -0.13 16 25 H 0.08 2.13 6.57 -51.93 -0.34 1.79 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.07 1.12 7.65 -51.93 -0.40 0.72 16 29 H 0.07 1.00 7.70 -51.93 -0.40 0.60 16 30 H 0.07 0.72 7.99 -51.93 -0.42 0.31 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.06 0.47 7.56 -51.93 -0.39 0.07 16 35 H 0.34 2.58 9.04 -39.29 -0.36 2.23 16 36 H 0.34 3.41 7.88 -39.29 -0.31 3.10 16 37 H 0.05 0.76 8.04 -51.93 -0.42 0.34 16 38 H 0.07 1.25 7.96 -51.93 -0.41 0.84 16 LS Contribution 304.61 15.07 4.59 4.59 Total: -1.00 -32.10 304.61 -7.14 -39.24 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.25 Total: 1.62 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -0.59 Total: -1.92 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.04 Total: -45.62 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.09 Total: -14.95 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.10 -7.14 -39.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340260589.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.647 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds