Wall clock time and date at job start Thu Apr 9 2020 12:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99877 * 2 1 4 4 C 1.52997 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.09005 * 110.88979 * 305.70711 * 4 3 2 6 6 C 1.55163 * 111.00037 * 69.58129 * 4 3 2 7 7 C 1.54324 * 102.93966 * 153.58014 * 6 4 3 8 8 N 1.47023 * 107.27200 * 337.80330 * 7 6 4 9 9 C 1.34776 * 125.64756 * 178.90174 * 8 7 6 10 10 O 1.21284 * 120.00044 * 354.90816 * 9 8 7 11 11 C 1.50693 * 120.00180 * 174.90883 * 9 8 7 12 12 H 1.09003 * 109.47457 * 25.11836 * 11 9 8 13 13 C 1.53005 * 109.47065 * 265.12854 * 11 9 8 14 14 C 1.50693 * 109.47702 * 145.12333 * 11 9 8 15 15 H 1.08004 * 120.00024 * 0.02562 * 14 11 9 16 16 C 1.37878 * 120.00437 * 179.97438 * 14 11 9 17 17 N 1.31511 * 119.99803 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00161 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47358 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47293 * 120.00128 * 18 16 14 21 21 H 1.48506 * 109.46976 * 240.00000 * 18 16 14 22 22 C 1.47465 * 108.72286 * 358.98301 * 8 7 6 23 23 H 1.08995 * 109.47236 * 300.00045 * 1 2 3 24 24 H 1.08997 * 109.46744 * 60.00263 * 1 2 3 25 25 H 1.08996 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.00905 * 110.99643 * 123.95312 * 2 1 3 27 27 H 1.08999 * 109.47185 * 300.00042 * 3 2 1 28 28 H 1.09004 * 109.47041 * 60.00090 * 3 2 1 29 29 H 1.08996 * 110.72259 * 271.93808 * 6 4 3 30 30 H 1.09001 * 110.71850 * 35.21903 * 6 4 3 31 31 H 1.08993 * 109.88571 * 97.22628 * 7 6 4 32 32 H 1.09001 * 109.87782 * 218.23620 * 7 6 4 33 33 H 1.09005 * 109.46993 * 174.94525 * 13 11 9 34 34 H 1.09000 * 109.46974 * 294.93888 * 13 11 9 35 35 H 1.08994 * 109.47496 * 54.93985 * 13 11 9 36 36 H 0.97008 * 119.99844 * 180.02562 * 17 16 14 37 37 H 1.09001 * 110.34572 * 265.25091 * 22 8 7 38 38 H 1.08998 * 110.40886 * 142.91392 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3307 0.0006 5 1 3.8972 0.7263 0.8278 6 6 4.0679 0.8105 -1.3566 7 6 5.4669 1.4565 -1.4396 8 7 5.4576 2.6327 -0.5575 9 6 6.5009 3.4568 -0.3362 10 8 7.5862 3.2030 -0.8143 11 6 6.3188 4.6936 0.5053 12 1 5.4824 4.5481 1.1890 13 6 6.0323 5.8909 -0.4032 14 6 7.5750 4.9525 1.2963 15 1 8.4210 4.2881 1.1991 16 6 7.6450 6.0381 2.1434 17 7 6.6151 6.8474 2.2614 18 14 9.2025 6.3594 3.1233 19 1 10.2075 5.3109 2.8135 20 1 9.7497 7.6914 2.7607 21 1 8.8888 6.3316 4.5746 22 6 4.1185 2.7607 0.0466 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8306 -0.5262 0.7814 27 1 1.6459 1.8948 -0.8900 28 1 1.6459 1.8948 0.8900 29 1 4.1450 -0.2767 -1.3499 30 1 3.4376 1.1485 -2.1792 31 1 6.2233 0.7472 -1.1037 32 1 5.6742 1.7612 -2.4654 33 1 5.8121 6.7662 0.2080 34 1 6.9046 6.0921 -1.0250 35 1 5.1762 5.6674 -1.0397 36 1 6.6645 7.6115 2.8571 37 1 3.5034 3.4457 -0.5370 38 1 4.1980 3.1055 1.0776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340479556.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:05 Heat of formation + Delta-G solvation = -43.296479 kcal Electronic energy + Delta-G solvation = -17615.889326 eV Core-core repulsion = 14878.790592 eV Total energy + Delta-G solvation = -2737.098734 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.46203 -37.43384 -35.55556 -33.70334 -31.52007 -30.44167 -29.07476 -26.36959 -25.16719 -23.67233 -23.16112 -21.35386 -20.29157 -18.42399 -16.53854 -16.07417 -15.99677 -15.66246 -14.83502 -14.55299 -14.16325 -13.94091 -13.36700 -13.30489 -12.65697 -12.56417 -12.35535 -12.33355 -11.85562 -11.61382 -11.39376 -10.99498 -10.89571 -10.82945 -10.66616 -10.62987 -10.52923 -10.18782 -10.02409 -8.96866 -8.66238 -8.57515 -8.30807 -7.97726 -6.03700 -4.06859 3.31815 3.39282 3.46766 3.69191 3.76357 4.02475 4.46700 4.74178 4.74399 4.91100 5.14816 5.21421 5.29708 5.41028 5.45230 5.47244 5.64261 5.66986 5.73321 5.89334 6.03040 6.08308 6.18156 6.25535 6.40643 6.70575 6.74884 6.89102 6.99620 7.04897 7.12693 7.50671 7.77424 8.00032 8.17041 8.44141 8.97812 9.26522 9.57815 11.03973 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033050 B = 0.005399 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.993643 B = 5184.435760 C = 5564.018651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.694 5.694 3 C 0.069 3.931 4 C -0.102 4.102 5 H 0.083 0.917 6 C -0.111 4.111 7 C 0.102 3.898 8 N -0.631 5.631 9 C 0.537 3.463 10 O -0.549 6.549 11 C 0.035 3.965 12 H 0.044 0.956 13 C -0.125 4.125 14 C -0.500 4.500 15 H 0.067 0.933 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.899 3.101 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.112 3.888 23 H 0.021 0.979 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.341 0.659 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.035 0.965 35 H 0.009 0.991 36 H 0.260 0.740 37 H 0.063 0.937 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.643 -10.672 -3.469 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.324 5.324 3 C -0.061 4.061 4 C -0.121 4.121 5 H 0.101 0.899 6 C -0.149 4.149 7 C -0.021 4.021 8 N -0.368 5.368 9 C 0.329 3.671 10 O -0.425 6.425 11 C 0.014 3.986 12 H 0.062 0.938 13 C -0.183 4.183 14 C -0.538 4.538 15 H 0.085 0.915 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.012 4.012 23 H 0.040 0.960 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.158 0.842 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.055 0.945 35 H 0.029 0.971 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.962 -10.645 -4.312 16.583 hybrid contribution 0.484 0.490 1.452 1.607 sum -11.477 -10.155 -2.859 15.590 Atomic orbital electron populations 1.22182 0.87895 1.01708 1.00444 1.60387 1.07578 1.14433 1.50023 1.21924 0.93682 0.89427 1.01059 1.22378 0.94118 0.96845 0.98789 0.89908 1.22544 0.94914 1.00563 0.96882 1.21847 0.97169 0.88404 0.94667 1.48803 1.12071 1.28703 1.47271 1.21808 0.81494 0.84062 0.79704 1.90538 1.25274 1.74593 1.52076 1.18876 0.99500 0.87415 0.92839 0.93777 1.21646 0.97404 1.01222 0.98051 1.21078 0.99034 1.11006 1.22695 0.91516 1.24926 0.96644 0.95745 0.96741 1.69894 1.29788 1.15582 1.38126 0.86408 0.83286 0.78227 0.79407 1.19593 1.20923 1.21024 1.22177 0.83968 0.95585 0.99472 0.96041 0.91732 0.91570 0.84152 0.90569 0.94639 0.90295 0.90919 0.92299 0.92408 0.89086 0.94532 0.97148 0.92984 0.91847 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.70 60.07 0.64 0.85 16 2 N -0.69 -6.24 6.75 -121.13 -0.82 -7.05 16 3 C 0.07 0.68 5.13 -3.83 -0.02 0.66 16 4 C -0.10 -1.20 3.21 -88.47 -0.28 -1.48 16 5 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 6 C -0.11 -1.32 6.32 -24.89 -0.16 -1.48 16 7 C 0.10 1.63 6.87 -3.06 -0.02 1.61 16 8 N -0.63 -12.14 3.33 -170.50 -0.57 -12.70 16 9 C 0.54 13.10 6.83 -10.99 -0.08 13.02 16 10 O -0.55 -15.19 16.45 5.55 0.09 -15.10 16 11 C 0.03 0.90 2.35 -92.93 -0.22 0.68 16 12 H 0.04 1.13 6.36 -51.93 -0.33 0.80 16 13 C -0.13 -3.08 8.88 37.16 0.33 -2.75 16 14 C -0.50 -14.44 8.32 -34.44 -0.29 -14.73 16 15 H 0.07 2.03 7.25 -52.48 -0.38 1.65 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -25.25 11.37 55.43 0.63 -24.62 16 18 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.11 1.72 6.02 -2.51 -0.02 1.70 16 23 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.34 2.76 8.82 -39.29 -0.35 2.42 16 27 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.82 7.97 -51.93 -0.41 0.41 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 2.38 6.22 -51.93 -0.32 2.05 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.06 0.91 8.04 -51.93 -0.42 0.50 16 38 H 0.08 1.32 6.86 -51.93 -0.36 0.97 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -31.92 307.96 -7.59 -39.51 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.35 Total: -1.23 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -0.20 Total: -0.33 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -0.75 Total: -44.38 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.09 Total: -15.10 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.92 -7.59 -39.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340479556.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.784 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds