Wall clock time and date at job start Thu Apr 9 2020 12:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99877 * 2 1 4 4 C 1.52997 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.09005 * 110.88979 * 305.70711 * 4 3 2 6 6 C 1.55163 * 111.00037 * 69.58129 * 4 3 2 7 7 C 1.54324 * 102.93966 * 153.58014 * 6 4 3 8 8 N 1.47023 * 107.27200 * 337.80330 * 7 6 4 9 9 C 1.34776 * 125.64756 * 178.90174 * 8 7 6 10 10 O 1.21284 * 120.00044 * 354.90816 * 9 8 7 11 11 C 1.50693 * 120.00180 * 174.90883 * 9 8 7 12 12 H 1.09003 * 109.47457 * 25.11836 * 11 9 8 13 13 C 1.53005 * 109.47065 * 265.12854 * 11 9 8 14 14 C 1.50693 * 109.47702 * 145.12333 * 11 9 8 15 15 H 1.08004 * 120.00024 * 0.02562 * 14 11 9 16 16 C 1.37878 * 120.00437 * 179.97438 * 14 11 9 17 17 N 1.31511 * 119.99803 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00161 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47358 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47293 * 120.00128 * 18 16 14 21 21 H 1.48506 * 109.46976 * 240.00000 * 18 16 14 22 22 C 1.47465 * 108.72286 * 358.98301 * 8 7 6 23 23 H 1.08995 * 109.47236 * 300.00045 * 1 2 3 24 24 H 1.08997 * 109.46744 * 60.00263 * 1 2 3 25 25 H 1.08996 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.00905 * 110.99643 * 123.95312 * 2 1 3 27 27 H 1.08999 * 109.47185 * 300.00042 * 3 2 1 28 28 H 1.09004 * 109.47041 * 60.00090 * 3 2 1 29 29 H 1.08996 * 110.72259 * 271.93808 * 6 4 3 30 30 H 1.09001 * 110.71850 * 35.21903 * 6 4 3 31 31 H 1.08993 * 109.88571 * 97.22628 * 7 6 4 32 32 H 1.09001 * 109.87782 * 218.23620 * 7 6 4 33 33 H 1.09005 * 109.46993 * 174.94525 * 13 11 9 34 34 H 1.09000 * 109.46974 * 294.93888 * 13 11 9 35 35 H 1.08994 * 109.47496 * 54.93985 * 13 11 9 36 36 H 0.97008 * 119.99844 * 180.02562 * 17 16 14 37 37 H 1.09001 * 110.34572 * 265.25091 * 22 8 7 38 38 H 1.08998 * 110.40886 * 142.91392 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3307 0.0006 5 1 3.8972 0.7263 0.8278 6 6 4.0679 0.8105 -1.3566 7 6 5.4669 1.4565 -1.4396 8 7 5.4576 2.6327 -0.5575 9 6 6.5009 3.4568 -0.3362 10 8 7.5862 3.2030 -0.8143 11 6 6.3188 4.6936 0.5053 12 1 5.4824 4.5481 1.1890 13 6 6.0323 5.8909 -0.4032 14 6 7.5750 4.9525 1.2963 15 1 8.4210 4.2881 1.1991 16 6 7.6450 6.0381 2.1434 17 7 6.6151 6.8474 2.2614 18 14 9.2025 6.3594 3.1233 19 1 10.2075 5.3109 2.8135 20 1 9.7497 7.6914 2.7607 21 1 8.8888 6.3316 4.5746 22 6 4.1185 2.7607 0.0466 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8306 -0.5262 0.7814 27 1 1.6459 1.8948 -0.8900 28 1 1.6459 1.8948 0.8900 29 1 4.1450 -0.2767 -1.3499 30 1 3.4376 1.1485 -2.1792 31 1 6.2233 0.7472 -1.1037 32 1 5.6742 1.7612 -2.4654 33 1 5.8121 6.7662 0.2080 34 1 6.9046 6.0921 -1.0250 35 1 5.1762 5.6674 -1.0397 36 1 6.6645 7.6115 2.8571 37 1 3.5034 3.4457 -0.5370 38 1 4.1980 3.1055 1.0776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340479556.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:05 Heat of formation + Delta-G solvation = -65.694333 kcal Electronic energy + Delta-G solvation = -17616.860570 eV Core-core repulsion = 14878.790592 eV Total energy + Delta-G solvation = -2738.069978 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.01183 -38.86577 -36.54502 -35.80572 -33.06244 -32.13428 -30.36996 -27.33661 -27.29122 -25.20371 -24.06833 -22.93409 -21.33831 -20.09957 -18.43196 -17.87815 -17.29859 -16.84911 -16.40408 -15.91381 -15.38342 -15.20372 -14.71239 -14.66065 -14.26448 -14.09181 -13.77367 -13.37699 -13.28697 -12.97979 -12.78433 -12.67757 -12.61874 -12.49462 -12.29443 -12.10270 -11.88386 -11.79236 -11.55689 -11.07969 -10.63649 -10.33774 -9.56524 -9.33256 -8.18763 -6.29882 1.38122 1.40220 1.53161 1.85949 2.17153 2.44556 3.10556 3.20523 3.63581 3.76523 3.97478 4.26379 4.29371 4.39290 4.45866 4.55601 4.62175 4.71956 4.73596 4.78752 4.78975 4.91146 4.97886 5.00836 5.06276 5.11723 5.13981 5.36900 5.41393 5.54555 5.67684 5.87715 6.06030 6.14979 6.49846 6.62995 6.75739 7.34236 7.44787 8.87716 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033050 B = 0.005399 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.993643 B = 5184.435760 C = 5564.018651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.699 5.699 3 C 0.077 3.923 4 C -0.088 4.088 5 H 0.084 0.916 6 C -0.094 4.094 7 C 0.095 3.905 8 N -0.628 5.628 9 C 0.532 3.468 10 O -0.595 6.595 11 C 0.032 3.968 12 H 0.043 0.957 13 C -0.112 4.112 14 C -0.531 4.531 15 H 0.039 0.961 16 C 0.024 3.976 17 N -0.908 5.908 18 Si 0.957 3.043 19 H -0.280 1.280 20 H -0.274 1.274 21 H -0.269 1.269 22 C 0.103 3.897 23 H 0.023 0.977 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.347 0.653 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.018 0.982 35 H 0.039 0.961 36 H 0.267 0.733 37 H 0.078 0.922 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.317 -11.460 -3.333 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.330 5.330 3 C -0.053 4.053 4 C -0.107 4.107 5 H 0.102 0.898 6 C -0.132 4.132 7 C -0.027 4.027 8 N -0.362 5.362 9 C 0.324 3.676 10 O -0.475 6.475 11 C 0.011 3.989 12 H 0.061 0.939 13 C -0.171 4.171 14 C -0.569 4.569 15 H 0.058 0.942 16 C -0.176 4.176 17 N -0.547 5.547 18 Si 0.783 3.217 19 H -0.205 1.205 20 H -0.199 1.199 21 H -0.194 1.194 22 C -0.020 4.020 23 H 0.042 0.958 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.164 0.836 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.037 0.963 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.709 -11.454 -4.170 18.344 hybrid contribution 0.938 0.704 1.404 1.829 sum -12.771 -10.749 -2.766 16.920 Atomic orbital electron populations 1.22218 0.86887 1.02540 1.00561 1.60376 1.08526 1.13659 1.50456 1.21799 0.91821 0.90261 1.01415 1.22278 0.95515 0.94094 0.98846 0.89783 1.22501 0.92065 1.01317 0.97269 1.22109 0.99827 0.87102 0.93706 1.48718 1.12276 1.28360 1.46892 1.21449 0.82014 0.84574 0.79543 1.90499 1.27258 1.75776 1.53988 1.18801 0.98174 0.88847 0.93082 0.93902 1.21467 0.97716 1.00203 0.97678 1.21178 0.99628 1.11564 1.24551 0.94237 1.25583 0.99531 0.95212 0.97272 1.69953 1.30913 1.15621 1.38212 0.85518 0.79598 0.77943 0.78679 1.20538 1.19926 1.19414 1.22452 0.82269 0.98542 0.98688 0.95823 0.91691 0.90446 0.83557 0.90177 0.94428 0.88314 0.89489 0.93175 0.92586 0.90572 0.96272 0.94234 0.92382 0.90377 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.70 127.69 1.37 1.70 16 2 N -0.70 -10.38 6.75 -537.16 -3.62 -14.01 16 3 C 0.08 1.29 5.13 86.30 0.44 1.73 16 4 C -0.09 -1.86 3.21 -9.40 -0.03 -1.89 16 5 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 6 C -0.09 -1.96 6.32 31.78 0.20 -1.76 16 7 C 0.09 2.93 6.87 86.73 0.60 3.53 16 8 N -0.63 -23.98 3.33 -811.71 -2.70 -26.68 16 9 C 0.53 26.55 6.83 87.65 0.60 27.15 16 10 O -0.59 -34.13 16.45 -3.04 -0.05 -34.18 16 11 C 0.03 1.69 2.35 -12.29 -0.03 1.66 16 12 H 0.04 2.24 6.36 -2.39 -0.02 2.23 16 13 C -0.11 -5.60 8.88 71.98 0.64 -4.96 16 14 C -0.53 -31.55 8.32 25.60 0.21 -31.34 16 15 H 0.04 2.51 7.25 -2.91 -0.02 2.49 16 16 C 0.02 1.34 5.30 84.66 0.45 1.79 16 17 N -0.91 -51.17 11.37 21.45 0.24 -50.93 16 18 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 19 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 C 0.10 3.03 6.02 86.85 0.52 3.55 16 23 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.35 4.58 8.82 -89.69 -0.79 3.79 16 27 H 0.08 1.32 8.04 -2.39 -0.02 1.30 16 28 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.09 1.64 7.97 -2.39 -0.02 1.62 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 4.00 6.22 -2.38 -0.01 3.99 16 34 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.27 14.10 8.31 -92.70 -0.77 13.33 16 37 H 0.08 2.09 8.04 -2.39 -0.02 2.07 16 38 H 0.07 2.20 6.86 -2.39 -0.02 2.19 16 Total: -1.00 -69.55 307.96 1.10 -68.44 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.24 Total: 9.04 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 4.97 Total: 1.16 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -6.08 Total: -91.61 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.05 Total: -34.18 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -69.55 1.10 -68.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340479556.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.746 kcal (2) G-P(sol) polarization free energy of solvation -69.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds