Wall clock time and date at job start Thu Apr 9 2020 12:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00275 * 2 1 4 4 C 1.52992 * 109.47379 * 179.97438 * 3 2 1 5 5 H 1.09005 * 110.88651 * 54.29635 * 4 3 2 6 6 C 1.55160 * 111.00423 * 290.42036 * 4 3 2 7 7 C 1.54324 * 102.94394 * 206.38307 * 6 4 3 8 8 N 1.47028 * 107.27137 * 22.19275 * 7 6 4 9 9 C 1.34770 * 125.64907 * 181.10335 * 8 7 6 10 10 O 1.21285 * 119.99871 * 176.13505 * 9 8 7 11 11 C 1.50698 * 120.00104 * 356.14124 * 9 8 7 12 12 H 1.09003 * 109.47294 * 33.69110 * 11 9 8 13 13 C 1.53010 * 109.46616 * 273.69135 * 11 9 8 14 14 C 1.50703 * 109.47319 * 153.69805 * 11 9 8 15 15 H 1.07999 * 119.99776 * 4.91667 * 14 11 9 16 16 C 1.37873 * 119.99911 * 184.92038 * 14 11 9 17 17 N 1.31513 * 119.99985 * 196.80329 * 16 14 11 18 18 Si 1.86799 * 120.00187 * 16.81288 * 16 14 11 19 19 H 1.48501 * 109.47435 * 95.85186 * 18 16 14 20 20 H 1.48504 * 109.46982 * 215.85577 * 18 16 14 21 21 H 1.48510 * 109.46953 * 335.85448 * 18 16 14 22 22 C 1.47425 * 108.69908 * 1.05890 * 8 7 6 23 23 H 1.08999 * 109.47887 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47319 * 300.00360 * 1 2 3 25 25 H 1.09003 * 109.47005 * 60.00145 * 1 2 3 26 26 H 1.00906 * 110.99656 * 123.95590 * 2 1 3 27 27 H 1.09004 * 109.46797 * 59.99499 * 3 2 1 28 28 H 1.09006 * 109.47025 * 300.00340 * 3 2 1 29 29 H 1.09001 * 110.71898 * 324.74754 * 6 4 3 30 30 H 1.09006 * 110.72173 * 87.84283 * 6 4 3 31 31 H 1.08998 * 109.88279 * 141.61019 * 7 6 4 32 32 H 1.08997 * 109.88421 * 262.77517 * 7 6 4 33 33 H 1.09001 * 109.46547 * 59.40697 * 13 11 9 34 34 H 1.09004 * 109.46298 * 179.39877 * 13 11 9 35 35 H 1.08998 * 109.47107 * 299.40635 * 13 11 9 36 36 H 0.97000 * 119.99823 * 180.02562 * 17 16 14 37 37 H 1.09003 * 110.36980 * 217.03404 * 22 8 7 38 38 H 1.08998 * 110.36919 * 94.71358 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 0.0006 5 1 3.8978 0.7259 -0.8261 6 6 4.0668 0.8107 1.3584 7 6 5.4662 1.4559 1.4419 8 7 5.4582 2.6317 0.5592 9 6 6.5020 3.4549 0.3380 10 8 6.4030 4.3570 -0.4666 11 6 7.7923 3.2546 1.0904 12 1 7.9477 2.1904 1.2683 13 6 7.7210 3.9906 2.4300 14 6 8.9378 3.8007 0.2776 15 1 8.7432 4.3187 -0.6498 16 6 10.2343 3.6389 0.7180 17 7 11.1977 4.3770 0.2114 18 14 10.6225 2.3713 2.0339 19 1 11.0789 1.1133 1.3902 20 1 11.6943 2.8908 2.9208 21 1 9.4026 2.1021 2.8370 22 6 4.1194 2.7603 -0.0446 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8305 -0.5262 0.7814 27 1 1.6459 1.8947 0.8900 28 1 1.6459 1.8948 -0.8900 29 1 3.4362 1.1495 2.1805 30 1 4.1402 -0.2768 1.3535 31 1 5.6720 1.7634 2.4672 32 1 6.2223 0.7459 1.1068 33 1 6.8860 3.6029 3.0135 34 1 8.6502 3.8368 2.9787 35 1 7.5761 5.0561 2.2518 36 1 12.1099 4.2629 0.5209 37 1 4.1997 3.1052 -1.0755 38 1 3.5044 3.4455 0.5387 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340479570.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:10 Heat of formation + Delta-G solvation = -37.418994 kcal Electronic energy + Delta-G solvation = -17623.838342 eV Core-core repulsion = 14886.994475 eV Total energy + Delta-G solvation = -2736.843867 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.64940 -37.59958 -35.65468 -33.72022 -31.81406 -30.85638 -29.34130 -26.63247 -25.15236 -23.88869 -23.10218 -21.62601 -20.29535 -18.44670 -16.88756 -16.78502 -16.04128 -15.32470 -14.86961 -14.74368 -14.28065 -13.98292 -13.69395 -13.49731 -12.82461 -12.70182 -12.50174 -12.26560 -12.21165 -12.05598 -11.89589 -11.42058 -11.00012 -10.96121 -10.84706 -10.68475 -10.51778 -10.33804 -9.66225 -9.23768 -8.76658 -8.68829 -8.39731 -8.11518 -6.08075 -4.02396 3.25333 3.34087 3.36180 3.52275 3.60053 3.95629 4.40862 4.47759 4.62787 4.83070 5.02852 5.12663 5.21234 5.23706 5.29382 5.35282 5.52748 5.57517 5.61013 5.72118 5.74407 5.90451 6.02499 6.09643 6.23509 6.27140 6.46575 6.58060 6.66024 6.73710 6.97843 7.05095 7.25497 7.61757 8.13338 8.53991 9.09954 9.13588 9.54827 11.04951 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045203 B = 0.005291 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.273207 B = 5291.138710 C = 5610.974539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.695 5.695 3 C 0.070 3.930 4 C -0.101 4.101 5 H 0.094 0.906 6 C -0.129 4.129 7 C 0.105 3.895 8 N -0.633 5.633 9 C 0.546 3.454 10 O -0.534 6.534 11 C 0.007 3.993 12 H 0.040 0.960 13 C -0.133 4.133 14 C -0.512 4.512 15 H 0.087 0.913 16 C 0.077 3.923 17 N -0.887 5.887 18 Si 0.861 3.139 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.256 1.256 22 C 0.112 3.888 23 H 0.067 0.933 24 H 0.021 0.979 25 H 0.064 0.936 26 H 0.342 0.658 27 H 0.033 0.967 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.264 0.736 37 H 0.076 0.924 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.508 -10.237 5.035 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.325 5.325 3 C -0.060 4.060 4 C -0.121 4.121 5 H 0.112 0.888 6 C -0.167 4.167 7 C -0.019 4.019 8 N -0.370 5.370 9 C 0.337 3.663 10 O -0.408 6.408 11 C -0.015 4.015 12 H 0.058 0.942 13 C -0.191 4.191 14 C -0.549 4.549 15 H 0.105 0.895 16 C -0.126 4.126 17 N -0.524 5.524 18 Si 0.688 3.312 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.180 1.180 22 C -0.012 4.012 23 H 0.085 0.915 24 H 0.039 0.961 25 H 0.083 0.917 26 H 0.159 0.841 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.217 -9.679 3.893 20.993 hybrid contribution 0.168 -0.469 1.669 1.742 sum -18.049 -10.148 5.562 21.440 Atomic orbital electron populations 1.22190 0.87816 1.01822 1.00435 1.60371 1.07658 1.14401 1.50103 1.21899 0.93701 0.89457 1.00924 1.22405 0.94166 0.96919 0.98605 0.88787 1.22727 0.95994 1.00779 0.97202 1.21914 0.97174 0.87973 0.94801 1.48749 1.11439 1.29421 1.47437 1.21155 0.83774 0.79624 0.81766 1.90584 1.82577 1.32534 1.35144 1.19192 0.90902 0.97584 0.93814 0.94172 1.22024 0.99580 1.00985 0.96541 1.20827 0.88216 1.36932 1.08955 0.89520 1.24912 0.96216 0.95397 0.96047 1.69990 1.01073 1.37200 1.44106 0.87182 0.78609 0.82879 0.82534 1.20563 1.21126 1.18006 1.22037 0.84303 0.95436 0.99430 0.91462 0.96086 0.91666 0.84074 0.94858 0.90573 0.91123 0.90072 0.91606 0.91385 0.95542 0.92623 0.92686 0.92609 0.90584 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.70 60.06 0.64 0.83 16 2 N -0.69 -5.94 6.86 -121.14 -0.83 -6.77 16 3 C 0.07 0.64 5.19 -3.83 -0.02 0.62 16 4 C -0.10 -1.11 3.27 -88.47 -0.29 -1.40 16 5 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 6 C -0.13 -1.29 5.75 -24.89 -0.14 -1.43 16 7 C 0.10 1.46 6.14 -3.06 -0.02 1.44 16 8 N -0.63 -11.33 3.33 -170.52 -0.57 -11.90 16 9 C 0.55 12.69 6.94 -10.99 -0.08 12.62 16 10 O -0.53 -14.46 16.06 5.55 0.09 -14.37 16 11 C 0.01 0.16 1.74 -92.92 -0.16 0.00 16 12 H 0.04 0.92 5.71 -51.93 -0.30 0.62 16 13 C -0.13 -2.92 8.56 37.16 0.32 -2.60 16 14 C -0.51 -15.03 8.77 -34.44 -0.30 -15.33 16 15 H 0.09 2.90 7.25 -52.49 -0.38 2.52 16 16 C 0.08 2.23 5.34 -17.82 -0.10 2.13 16 17 N -0.89 -27.44 13.96 55.43 0.77 -26.67 16 18 Si 0.86 20.71 25.85 -169.99 -4.39 16.32 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.26 -5.61 5.52 56.52 0.31 -5.30 16 22 C 0.11 1.63 6.40 -2.53 -0.02 1.61 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.02 0.14 8.14 -51.93 -0.42 -0.29 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.34 2.54 8.18 -39.29 -0.32 2.22 16 27 H 0.03 0.29 8.04 -51.93 -0.42 -0.12 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.63 7.97 -51.93 -0.41 0.21 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.89 7.65 -51.93 -0.40 0.49 16 32 H 0.07 0.96 7.88 -51.93 -0.41 0.55 16 33 H 0.03 0.48 7.65 -51.93 -0.40 0.08 16 34 H 0.05 1.22 5.11 -51.93 -0.27 0.95 16 35 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.08 1.22 8.00 -51.93 -0.42 0.80 16 38 H 0.06 0.80 8.04 -51.93 -0.42 0.38 16 LS Contribution 301.37 15.07 4.54 4.54 Total: -1.00 -33.74 301.37 -6.86 -40.60 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.32 Total: -0.24 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -0.16 Total: -1.51 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -0.62 Total: -45.34 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.09 Total: -14.37 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.39 Total: 16.32 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.74 -6.86 -40.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340479570.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.185 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds