Wall clock time and date at job start Thu Apr 9 2020 12:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00275 * 2 1 4 4 C 1.52992 * 109.47379 * 179.97438 * 3 2 1 5 5 H 1.09005 * 110.88651 * 54.29635 * 4 3 2 6 6 C 1.55160 * 111.00423 * 290.42036 * 4 3 2 7 7 C 1.54324 * 102.94394 * 206.38307 * 6 4 3 8 8 N 1.47028 * 107.27137 * 22.19275 * 7 6 4 9 9 C 1.34770 * 125.64907 * 181.10335 * 8 7 6 10 10 O 1.21285 * 119.99871 * 176.13505 * 9 8 7 11 11 C 1.50698 * 120.00104 * 356.14124 * 9 8 7 12 12 H 1.09003 * 109.47294 * 33.69110 * 11 9 8 13 13 C 1.53010 * 109.46616 * 273.69135 * 11 9 8 14 14 C 1.50703 * 109.47319 * 153.69805 * 11 9 8 15 15 H 1.07999 * 119.99776 * 4.91667 * 14 11 9 16 16 C 1.37873 * 119.99911 * 184.92038 * 14 11 9 17 17 N 1.31513 * 119.99985 * 196.80329 * 16 14 11 18 18 Si 1.86799 * 120.00187 * 16.81288 * 16 14 11 19 19 H 1.48501 * 109.47435 * 95.85186 * 18 16 14 20 20 H 1.48504 * 109.46982 * 215.85577 * 18 16 14 21 21 H 1.48510 * 109.46953 * 335.85448 * 18 16 14 22 22 C 1.47425 * 108.69908 * 1.05890 * 8 7 6 23 23 H 1.08999 * 109.47887 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47319 * 300.00360 * 1 2 3 25 25 H 1.09003 * 109.47005 * 60.00145 * 1 2 3 26 26 H 1.00906 * 110.99656 * 123.95590 * 2 1 3 27 27 H 1.09004 * 109.46797 * 59.99499 * 3 2 1 28 28 H 1.09006 * 109.47025 * 300.00340 * 3 2 1 29 29 H 1.09001 * 110.71898 * 324.74754 * 6 4 3 30 30 H 1.09006 * 110.72173 * 87.84283 * 6 4 3 31 31 H 1.08998 * 109.88279 * 141.61019 * 7 6 4 32 32 H 1.08997 * 109.88421 * 262.77517 * 7 6 4 33 33 H 1.09001 * 109.46547 * 59.40697 * 13 11 9 34 34 H 1.09004 * 109.46298 * 179.39877 * 13 11 9 35 35 H 1.08998 * 109.47107 * 299.40635 * 13 11 9 36 36 H 0.97000 * 119.99823 * 180.02562 * 17 16 14 37 37 H 1.09003 * 110.36980 * 217.03404 * 22 8 7 38 38 H 1.08998 * 110.36919 * 94.71358 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 0.0006 5 1 3.8978 0.7259 -0.8261 6 6 4.0668 0.8107 1.3584 7 6 5.4662 1.4559 1.4419 8 7 5.4582 2.6317 0.5592 9 6 6.5020 3.4549 0.3380 10 8 6.4030 4.3570 -0.4666 11 6 7.7923 3.2546 1.0904 12 1 7.9477 2.1904 1.2683 13 6 7.7210 3.9906 2.4300 14 6 8.9378 3.8007 0.2776 15 1 8.7432 4.3187 -0.6498 16 6 10.2343 3.6389 0.7180 17 7 11.1977 4.3770 0.2114 18 14 10.6225 2.3713 2.0339 19 1 11.0789 1.1133 1.3902 20 1 11.6943 2.8908 2.9208 21 1 9.4026 2.1021 2.8370 22 6 4.1194 2.7603 -0.0446 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8305 -0.5262 0.7814 27 1 1.6459 1.8947 0.8900 28 1 1.6459 1.8948 -0.8900 29 1 3.4362 1.1495 2.1805 30 1 4.1402 -0.2768 1.3535 31 1 5.6720 1.7634 2.4672 32 1 6.2223 0.7459 1.1068 33 1 6.8860 3.6029 3.0135 34 1 8.6502 3.8368 2.9787 35 1 7.5761 5.0561 2.2518 36 1 12.1099 4.2629 0.5209 37 1 4.1997 3.1052 -1.0755 38 1 3.5044 3.4455 0.5387 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340479570.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:10 Heat of formation + Delta-G solvation = -63.891757 kcal Electronic energy + Delta-G solvation = -17624.986287 eV Core-core repulsion = 14886.994475 eV Total energy + Delta-G solvation = -2737.991813 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.08779 -38.93677 -36.59076 -35.75616 -33.53050 -32.37712 -30.37351 -27.60116 -27.21021 -25.11502 -23.99983 -23.17854 -21.24599 -20.00590 -18.89970 -17.95733 -17.53646 -16.76842 -16.24053 -15.91069 -15.55689 -15.11295 -15.00787 -14.63557 -14.43947 -14.09358 -13.97238 -13.63508 -13.42813 -13.21332 -12.84350 -12.79882 -12.70427 -12.52300 -12.27034 -11.90280 -11.66646 -11.59952 -11.48818 -11.36132 -10.62985 -10.50597 -9.57792 -9.36760 -8.31130 -6.33894 1.37033 1.41014 1.52048 1.80973 2.12055 2.36773 3.01682 3.21057 3.59138 3.66984 3.97281 4.13103 4.31518 4.34995 4.40781 4.45463 4.55831 4.60447 4.67176 4.69250 4.73421 4.75377 4.85507 4.95265 4.99982 5.06058 5.09124 5.16358 5.34592 5.44029 5.49481 5.59283 6.04155 6.24242 6.51884 6.57454 6.78282 7.24724 7.40553 8.87051 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045203 B = 0.005291 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.273207 B = 5291.138710 C = 5610.974539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.704 5.704 3 C 0.078 3.922 4 C -0.088 4.088 5 H 0.083 0.917 6 C -0.113 4.113 7 C 0.089 3.911 8 N -0.628 5.628 9 C 0.537 3.463 10 O -0.593 6.593 11 C 0.006 3.994 12 H 0.065 0.935 13 C -0.128 4.128 14 C -0.532 4.532 15 H 0.019 0.981 16 C 0.015 3.985 17 N -0.943 5.943 18 Si 0.941 3.059 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.212 1.212 22 C 0.104 3.896 23 H 0.078 0.922 24 H 0.028 0.972 25 H 0.060 0.940 26 H 0.351 0.649 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.269 0.731 37 H 0.050 0.950 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.451 -13.428 8.209 25.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.336 5.336 3 C -0.052 4.052 4 C -0.107 4.107 5 H 0.101 0.899 6 C -0.151 4.151 7 C -0.033 4.033 8 N -0.362 5.362 9 C 0.329 3.671 10 O -0.473 6.473 11 C -0.015 4.015 12 H 0.083 0.917 13 C -0.186 4.186 14 C -0.570 4.570 15 H 0.037 0.963 16 C -0.183 4.183 17 N -0.582 5.582 18 Si 0.762 3.238 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.134 1.134 22 C -0.019 4.019 23 H 0.096 0.904 24 H 0.047 0.953 25 H 0.079 0.921 26 H 0.169 0.831 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.228 -12.924 7.094 25.031 hybrid contribution 0.714 0.573 0.566 1.076 sum -19.514 -12.351 7.660 24.332 Atomic orbital electron populations 1.22220 0.86852 1.02622 1.00574 1.60331 1.08623 1.13809 1.50815 1.21761 0.92059 0.90205 1.01188 1.22259 0.95357 0.93836 0.99288 0.89863 1.22732 0.93488 1.02085 0.96766 1.22341 0.99963 0.86454 0.94519 1.48665 1.11202 1.29161 1.47186 1.21002 0.84932 0.79877 0.81337 1.90553 1.83721 1.35371 1.37643 1.19134 0.89581 0.98622 0.94193 0.91722 1.21920 1.01568 0.99584 0.95528 1.20949 0.91040 1.37225 1.07765 0.96279 1.26004 0.95353 0.97451 0.99481 1.70162 1.01833 1.39445 1.46774 0.85927 0.80002 0.78786 0.79041 1.19760 1.20711 1.13436 1.22263 0.83077 0.98491 0.98058 0.90373 0.95345 0.92132 0.83087 0.93777 0.91273 0.88922 0.87340 0.90083 0.91251 0.91068 0.92268 0.94889 0.92250 0.93130 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.70 127.69 1.37 1.66 16 2 N -0.70 -9.70 6.86 -537.16 -3.68 -13.38 16 3 C 0.08 1.20 5.19 86.30 0.45 1.65 16 4 C -0.09 -1.70 3.27 -9.40 -0.03 -1.73 16 5 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 6 C -0.11 -1.73 5.75 31.78 0.18 -1.54 16 7 C 0.09 2.13 6.14 86.73 0.53 2.66 16 8 N -0.63 -21.69 3.33 -811.79 -2.70 -24.39 16 9 C 0.54 25.45 6.94 87.66 0.61 26.06 16 10 O -0.59 -34.16 16.06 -3.05 -0.05 -34.21 16 11 C 0.01 0.30 1.74 -12.28 -0.02 0.28 16 12 H 0.06 2.77 5.71 -2.39 -0.01 2.76 16 13 C -0.13 -5.34 8.56 71.99 0.62 -4.72 16 14 C -0.53 -32.66 8.77 25.60 0.22 -32.44 16 15 H 0.02 1.38 7.25 -2.91 -0.02 1.36 16 16 C 0.01 0.88 5.34 84.65 0.45 1.33 16 17 N -0.94 -60.82 13.96 21.45 0.30 -60.52 16 18 Si 0.94 41.85 25.85 68.60 1.77 43.62 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.21 -7.91 5.52 99.48 0.55 -7.36 16 22 C 0.10 2.95 6.40 86.85 0.56 3.50 16 23 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.35 3.72 8.18 -89.69 -0.73 2.99 16 27 H 0.04 0.61 8.04 -2.38 -0.02 0.59 16 28 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.09 1.09 7.97 -2.39 -0.02 1.07 16 30 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.08 1.74 7.65 -2.39 -0.02 1.73 16 32 H 0.07 1.68 7.88 -2.39 -0.02 1.66 16 33 H 0.07 2.31 7.65 -2.39 -0.02 2.29 16 34 H 0.06 2.40 5.11 -2.39 -0.01 2.39 16 35 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 37 H 0.05 1.68 8.00 -2.39 -0.02 1.66 16 38 H 0.07 1.86 8.04 -2.39 -0.02 1.84 16 Total: -1.00 -80.21 301.37 0.72 -79.49 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.14 Total: 12.68 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 4.93 Total: -3.28 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -6.08 Total: -98.30 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.05 Total: -34.21 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.77 Total: 43.62 kcal Total: -80.21 0.72 -79.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340479570.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.599 kcal (2) G-P(sol) polarization free energy of solvation -80.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds