Wall clock time and date at job start Thu Apr 9 2020 12:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47153 * 2 1 4 4 C 1.53004 * 109.47096 * 240.00499 * 2 1 3 5 5 C 1.52999 * 109.47084 * 174.82027 * 4 2 1 6 6 C 1.50699 * 109.47002 * 175.24046 * 5 4 2 7 7 H 1.08001 * 120.00107 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00057 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99890 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99924 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47271 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.46889 * 119.99777 * 10 8 6 13 13 H 1.48502 * 109.46793 * 239.99798 * 10 8 6 14 14 N 1.46896 * 109.47724 * 120.00052 * 2 1 3 15 15 C 1.48566 * 110.99843 * 62.26372 * 14 2 1 16 16 C 1.54377 * 104.59507 * 200.96361 * 15 14 2 17 17 H 1.09001 * 110.32340 * 264.95943 * 16 15 14 18 18 C 1.53003 * 110.32554 * 142.74789 * 16 15 14 19 19 C 1.54258 * 105.06223 * 23.85300 * 16 15 14 20 20 H 1.09004 * 110.32665 * 241.00042 * 19 16 15 21 21 C 1.53003 * 110.32426 * 118.89540 * 19 16 15 22 22 N 1.46902 * 109.47046 * 175.00208 * 21 19 16 23 23 C 1.48561 * 110.99931 * 306.85189 * 14 2 1 24 24 H 1.08998 * 109.47278 * 306.51213 * 1 2 3 25 25 H 1.08998 * 109.47364 * 66.51444 * 1 2 3 26 26 H 1.09001 * 109.46820 * 186.51675 * 1 2 3 27 27 H 1.08999 * 109.47476 * 54.81192 * 4 2 1 28 28 H 1.09007 * 109.46401 * 294.81343 * 4 2 1 29 29 H 1.08995 * 109.47493 * 55.23855 * 5 4 2 30 30 H 1.09006 * 109.47088 * 295.23764 * 5 4 2 31 31 H 0.97000 * 120.00048 * 0.02562 * 9 8 6 32 32 H 1.09001 * 110.41270 * 319.74321 * 15 14 2 33 33 H 1.08997 * 110.40856 * 82.06889 * 15 14 2 34 34 H 1.09007 * 109.46758 * 61.45274 * 18 16 15 35 35 H 1.08994 * 109.47196 * 181.45305 * 18 16 15 36 36 H 1.08994 * 109.46990 * 301.45792 * 18 16 15 37 37 H 1.08999 * 109.47199 * 295.00324 * 21 19 16 38 38 H 1.08993 * 109.46818 * 55.00310 * 21 19 16 39 39 H 1.00899 * 111.00148 * 56.04860 * 22 21 19 40 40 H 1.00899 * 110.99812 * 180.02562 * 22 21 19 41 41 H 1.09005 * 110.40865 * 277.81781 * 23 14 2 42 42 H 1.09003 * 110.41487 * 40.25645 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5644 -0.6094 -1.3161 6 6 4.0767 -1.4170 -2.4807 7 1 3.3843 -1.9564 -3.1100 8 6 5.4294 -1.4672 -2.7429 9 7 6.2725 -0.8100 -1.9769 10 14 6.0645 -2.4690 -4.1861 11 1 4.9217 -3.1094 -4.8852 12 1 6.7851 -1.5764 -5.1291 13 1 6.9918 -3.5178 -3.6906 14 7 2.0197 -0.6925 1.1993 15 6 1.5887 -2.1142 1.2066 16 6 1.6834 -2.5419 2.6869 17 1 2.6424 -3.0221 2.8816 18 6 0.5331 -3.4861 3.0420 19 6 1.5679 -1.2306 3.4912 20 1 2.4694 -1.0682 4.0821 21 6 0.3379 -1.2714 4.4003 22 7 0.3117 -0.0684 5.2429 23 6 1.4130 -0.1210 2.4291 24 1 -0.3634 0.6114 0.8259 25 1 -0.3634 0.4095 -0.9425 26 1 -0.3633 -1.0211 0.1166 27 1 1.6028 -0.2638 -2.1369 28 1 1.7544 -1.7722 -1.2041 29 1 3.9976 -0.9902 -0.3913 30 1 3.8467 0.4354 -1.4463 31 1 5.9428 -0.2901 -1.2273 32 1 0.5623 -2.2021 0.8504 33 1 2.2566 -2.7170 0.5914 34 1 0.5988 -4.3853 2.4292 35 1 0.5985 -3.7586 4.0953 36 1 -0.4176 -2.9872 2.8541 37 1 -0.5642 -1.3071 3.7896 38 1 0.3834 -2.1575 5.0334 39 1 0.3345 0.7683 4.6795 40 1 -0.4917 -0.0719 5.8532 41 1 1.9499 0.7767 2.7361 42 1 0.3591 0.1031 2.2643 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246544674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:10 Heat of formation + Delta-G solvation = -14.792392 kcal Electronic energy + Delta-G solvation = -18299.980095 eV Core-core repulsion = 15699.950485 eV Total energy + Delta-G solvation = -2600.029610 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.88090 -36.29113 -33.84530 -33.05546 -31.05499 -28.97297 -28.68047 -25.67760 -24.98091 -23.92423 -22.16126 -21.13418 -19.21630 -18.69879 -16.53882 -16.33807 -16.05302 -15.57304 -14.60884 -14.18796 -13.85616 -13.74627 -13.57656 -13.13752 -12.81837 -12.58907 -12.36301 -12.23965 -12.05787 -11.62130 -11.51045 -11.15832 -10.90845 -10.67117 -10.61065 -10.46311 -10.27383 -10.14037 -10.04252 -9.73684 -9.56653 -8.85701 -8.36693 -8.18963 -7.94601 -6.22354 -3.89951 3.49347 3.54058 3.66833 4.25886 4.36585 4.62188 4.63780 4.82069 4.97497 5.15488 5.26622 5.33483 5.41712 5.43254 5.51765 5.54689 5.56106 5.57717 5.70072 5.72710 5.88451 5.94135 6.04730 6.13523 6.16032 6.19043 6.33983 6.40548 6.46220 6.54858 6.77019 6.93727 7.11792 7.21837 7.26495 7.48237 7.65683 7.84895 8.38792 8.63123 9.04507 9.82321 11.18740 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033621 B = 0.005322 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.622847 B = 5259.628782 C = 5434.851398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.068 3.932 3 H 0.077 0.923 4 C -0.096 4.096 5 C 0.015 3.985 6 C -0.601 4.601 7 H 0.044 0.956 8 C 0.014 3.986 9 N -0.917 5.917 10 Si 1.071 2.929 11 H -0.291 1.291 12 H -0.288 1.288 13 H -0.288 1.288 14 N -0.489 5.489 15 C 0.034 3.966 16 C -0.093 4.093 17 H 0.081 0.919 18 C -0.146 4.146 19 C -0.087 4.087 20 H 0.085 0.915 21 C 0.069 3.931 22 N -0.853 5.853 23 C 0.028 3.972 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.024 0.976 30 H 0.000 1.000 31 H 0.271 0.729 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.026 0.974 38 H 0.075 0.925 39 H 0.340 0.660 40 H 0.338 0.662 41 H 0.075 0.925 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.669 -1.016 11.581 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.040 4.040 3 H 0.096 0.904 4 C -0.134 4.134 5 C -0.022 4.022 6 C -0.640 4.640 7 H 0.062 0.938 8 C -0.190 4.190 9 N -0.554 5.554 10 Si 0.900 3.100 11 H -0.217 1.217 12 H -0.215 1.215 13 H -0.215 1.215 14 N -0.211 5.211 15 C -0.094 4.094 16 C -0.112 4.112 17 H 0.099 0.901 18 C -0.203 4.203 19 C -0.106 4.106 20 H 0.104 0.896 21 C -0.062 4.062 22 N -0.382 5.382 23 C -0.101 4.101 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.018 0.982 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.093 0.907 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.094 0.906 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.011 -1.676 11.039 16.399 hybrid contribution -3.249 0.671 0.201 3.324 sum -15.260 -1.004 11.240 18.979 Atomic orbital electron populations 1.22521 0.98902 1.01522 1.01577 1.21985 0.91236 0.99032 0.91788 0.90449 1.21602 0.99970 0.98542 0.93269 1.19147 0.89773 0.95973 0.97354 1.22171 0.94535 1.32841 1.14408 0.93756 1.25765 0.93596 0.97822 1.01803 1.70684 1.37491 1.29704 1.17487 0.83526 0.75163 0.75971 0.75301 1.21719 1.21483 1.21452 1.65612 1.52821 1.01767 1.00949 1.23240 0.99339 0.91032 0.95772 1.21898 0.99413 0.95051 0.94857 0.90087 1.21933 0.97984 0.99240 1.01176 1.21943 0.98544 0.94768 0.95375 0.89608 1.22030 0.96361 0.93289 0.94504 1.58737 1.49105 1.04960 1.25399 1.23284 0.97731 0.97967 0.91077 0.93140 0.92163 0.92541 0.93303 0.93123 0.95771 0.98206 0.91865 0.93739 0.89490 0.92579 0.92433 0.92835 0.95627 0.90672 0.84770 0.85063 0.90612 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.64 8.35 37.15 0.31 -2.33 16 2 C 0.07 1.19 2.55 -67.72 -0.17 1.02 16 3 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 4 C -0.10 -2.04 4.43 -26.73 -0.12 -2.16 16 5 C 0.01 0.39 4.23 -27.88 -0.12 0.27 16 6 C -0.60 -17.73 9.11 -34.44 -0.31 -18.05 16 7 H 0.04 1.29 7.74 -52.49 -0.41 0.89 16 8 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 9 N -0.92 -29.14 13.65 55.43 0.76 -28.38 16 10 Si 1.07 26.26 29.90 -169.99 -5.08 21.18 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 14 N -0.49 -8.31 4.84 -222.02 -1.07 -9.39 16 15 C 0.03 0.53 4.65 -2.18 -0.01 0.52 16 16 C -0.09 -1.20 3.65 -89.24 -0.33 -1.53 16 17 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 18 C -0.15 -1.52 7.91 37.16 0.29 -1.22 16 19 C -0.09 -1.08 3.29 -89.24 -0.29 -1.37 16 20 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 21 C 0.07 0.69 4.97 -3.82 -0.02 0.67 16 22 N -0.85 -7.94 9.62 -10.37 -0.10 -8.04 16 23 C 0.03 0.38 5.12 -2.18 -0.01 0.37 16 24 H 0.05 0.63 6.31 -51.93 -0.33 0.31 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.78 5.88 -51.93 -0.31 0.48 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.08 6.62 -51.92 -0.34 0.73 16 29 H 0.02 0.68 7.50 -51.93 -0.39 0.29 16 30 H 0.00 -0.01 8.01 -51.93 -0.42 -0.43 16 31 H 0.27 8.65 7.22 -40.82 -0.29 8.35 16 32 H 0.04 0.66 5.41 -51.93 -0.28 0.38 16 33 H 0.09 1.59 7.54 -51.93 -0.39 1.20 16 34 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.06 0.53 6.85 -51.93 -0.36 0.17 16 36 H 0.05 0.53 6.76 -51.93 -0.35 0.18 16 37 H 0.03 0.25 6.86 -51.93 -0.36 -0.10 16 38 H 0.07 0.73 6.56 -51.93 -0.34 0.39 16 39 H 0.34 3.03 8.31 -39.29 -0.33 2.71 16 40 H 0.34 2.47 9.08 -39.29 -0.36 2.11 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.04 0.54 5.10 -51.93 -0.26 0.28 16 LS Contribution 311.80 15.07 4.70 4.70 Total: -1.00 -31.71 311.80 -8.94 -40.65 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.26 Total: 2.77 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -0.88 Total: -23.50 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.42 Total: -45.81 kcal Atomic # 14 Polarization: 26.26 SS G_CDS: -5.08 Total: 21.18 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.71 -8.94 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246544674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.860 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds