Wall clock time and date at job start Thu Apr 9 2020 12:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47153 * 2 1 4 4 C 1.53004 * 109.47096 * 240.00499 * 2 1 3 5 5 C 1.52999 * 109.47084 * 174.82027 * 4 2 1 6 6 C 1.50699 * 109.47002 * 175.24046 * 5 4 2 7 7 H 1.08001 * 120.00107 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00057 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99890 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99924 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47271 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.46889 * 119.99777 * 10 8 6 13 13 H 1.48502 * 109.46793 * 239.99798 * 10 8 6 14 14 N 1.46896 * 109.47724 * 120.00052 * 2 1 3 15 15 C 1.48566 * 110.99843 * 62.26372 * 14 2 1 16 16 C 1.54377 * 104.59507 * 200.96361 * 15 14 2 17 17 H 1.09001 * 110.32340 * 264.95943 * 16 15 14 18 18 C 1.53003 * 110.32554 * 142.74789 * 16 15 14 19 19 C 1.54258 * 105.06223 * 23.85300 * 16 15 14 20 20 H 1.09004 * 110.32665 * 241.00042 * 19 16 15 21 21 C 1.53003 * 110.32426 * 118.89540 * 19 16 15 22 22 N 1.46902 * 109.47046 * 175.00208 * 21 19 16 23 23 C 1.48561 * 110.99931 * 306.85189 * 14 2 1 24 24 H 1.08998 * 109.47278 * 306.51213 * 1 2 3 25 25 H 1.08998 * 109.47364 * 66.51444 * 1 2 3 26 26 H 1.09001 * 109.46820 * 186.51675 * 1 2 3 27 27 H 1.08999 * 109.47476 * 54.81192 * 4 2 1 28 28 H 1.09007 * 109.46401 * 294.81343 * 4 2 1 29 29 H 1.08995 * 109.47493 * 55.23855 * 5 4 2 30 30 H 1.09006 * 109.47088 * 295.23764 * 5 4 2 31 31 H 0.97000 * 120.00048 * 0.02562 * 9 8 6 32 32 H 1.09001 * 110.41270 * 319.74321 * 15 14 2 33 33 H 1.08997 * 110.40856 * 82.06889 * 15 14 2 34 34 H 1.09007 * 109.46758 * 61.45274 * 18 16 15 35 35 H 1.08994 * 109.47196 * 181.45305 * 18 16 15 36 36 H 1.08994 * 109.46990 * 301.45792 * 18 16 15 37 37 H 1.08999 * 109.47199 * 295.00324 * 21 19 16 38 38 H 1.08993 * 109.46818 * 55.00310 * 21 19 16 39 39 H 1.00899 * 111.00148 * 56.04860 * 22 21 19 40 40 H 1.00899 * 110.99812 * 180.02562 * 22 21 19 41 41 H 1.09005 * 110.40865 * 277.81781 * 23 14 2 42 42 H 1.09003 * 110.41487 * 40.25645 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5644 -0.6094 -1.3161 6 6 4.0767 -1.4170 -2.4807 7 1 3.3843 -1.9564 -3.1100 8 6 5.4294 -1.4672 -2.7429 9 7 6.2725 -0.8100 -1.9769 10 14 6.0645 -2.4690 -4.1861 11 1 4.9217 -3.1094 -4.8852 12 1 6.7851 -1.5764 -5.1291 13 1 6.9918 -3.5178 -3.6906 14 7 2.0197 -0.6925 1.1993 15 6 1.5887 -2.1142 1.2066 16 6 1.6834 -2.5419 2.6869 17 1 2.6424 -3.0221 2.8816 18 6 0.5331 -3.4861 3.0420 19 6 1.5679 -1.2306 3.4912 20 1 2.4694 -1.0682 4.0821 21 6 0.3379 -1.2714 4.4003 22 7 0.3117 -0.0684 5.2429 23 6 1.4130 -0.1210 2.4291 24 1 -0.3634 0.6114 0.8259 25 1 -0.3634 0.4095 -0.9425 26 1 -0.3633 -1.0211 0.1166 27 1 1.6028 -0.2638 -2.1369 28 1 1.7544 -1.7722 -1.2041 29 1 3.9976 -0.9902 -0.3913 30 1 3.8467 0.4354 -1.4463 31 1 5.9428 -0.2901 -1.2273 32 1 0.5623 -2.2021 0.8504 33 1 2.2566 -2.7170 0.5914 34 1 0.5988 -4.3853 2.4292 35 1 0.5985 -3.7586 4.0953 36 1 -0.4176 -2.9872 2.8541 37 1 -0.5642 -1.3071 3.7896 38 1 0.3834 -2.1575 5.0334 39 1 0.3345 0.7683 4.6795 40 1 -0.4917 -0.0719 5.8532 41 1 1.9499 0.7767 2.7361 42 1 0.3591 0.1031 2.2643 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246544674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:08 Heat of formation + Delta-G solvation = -37.548651 kcal Electronic energy + Delta-G solvation = -18300.966880 eV Core-core repulsion = 15699.950485 eV Total energy + Delta-G solvation = -2601.016395 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.06295 -37.57006 -35.60688 -34.35247 -32.57122 -30.55359 -29.74711 -26.81995 -26.69928 -25.16098 -23.68879 -22.80948 -20.50604 -19.83133 -18.81595 -17.39009 -17.16466 -16.52678 -15.83460 -15.68309 -15.39363 -15.02318 -14.91102 -14.60094 -14.30717 -13.99602 -13.76834 -13.42649 -13.14961 -12.91465 -12.80780 -12.65704 -12.57937 -12.14649 -11.94492 -11.86334 -11.68265 -11.61154 -11.49355 -11.37598 -11.25196 -10.56843 -10.50891 -9.56276 -9.22292 -8.65907 -6.35211 1.50173 1.61044 1.76855 2.57261 3.06305 3.19417 3.50177 3.57442 3.78304 3.93490 4.02616 4.17037 4.22708 4.31026 4.36748 4.46227 4.52171 4.55431 4.60874 4.67050 4.75738 4.79105 4.80294 4.84267 4.96492 5.02182 5.13534 5.16810 5.23446 5.27670 5.33067 5.43182 5.48880 5.63276 5.99306 6.06419 6.19336 6.24607 6.27003 6.61440 6.62775 7.47605 8.74479 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033621 B = 0.005322 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.622847 B = 5259.628782 C = 5434.851398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.073 3.927 3 H 0.065 0.935 4 C -0.085 4.085 5 C 0.022 3.978 6 C -0.618 4.618 7 H 0.046 0.954 8 C -0.042 4.042 9 N -0.940 5.940 10 Si 1.122 2.878 11 H -0.270 1.270 12 H -0.277 1.277 13 H -0.278 1.278 14 N -0.522 5.522 15 C 0.037 3.963 16 C -0.090 4.090 17 H 0.063 0.937 18 C -0.138 4.138 19 C -0.081 4.081 20 H 0.068 0.932 21 C 0.078 3.922 22 N -0.861 5.861 23 C 0.033 3.967 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.049 0.951 29 H -0.001 1.001 30 H -0.026 1.026 31 H 0.254 0.746 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.036 0.964 38 H 0.083 0.917 39 H 0.342 0.658 40 H 0.351 0.649 41 H 0.069 0.931 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.807 -1.688 11.920 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.036 4.036 3 H 0.083 0.917 4 C -0.123 4.123 5 C -0.015 4.015 6 C -0.656 4.656 7 H 0.064 0.936 8 C -0.238 4.238 9 N -0.578 5.578 10 Si 0.943 3.057 11 H -0.194 1.194 12 H -0.203 1.203 13 H -0.204 1.204 14 N -0.246 5.246 15 C -0.091 4.091 16 C -0.110 4.110 17 H 0.082 0.918 18 C -0.196 4.196 19 C -0.100 4.100 20 H 0.086 0.914 21 C -0.053 4.053 22 N -0.392 5.392 23 C -0.095 4.095 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.017 0.983 30 H -0.008 1.008 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.101 0.899 39 H 0.155 0.845 40 H 0.165 0.835 41 H 0.088 0.912 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.182 -2.336 11.403 18.347 hybrid contribution -2.543 0.918 0.123 2.706 sum -16.724 -1.419 11.525 20.360 Atomic orbital electron populations 1.22381 0.95517 1.02452 1.02962 1.21781 0.93820 0.97605 0.90356 0.91702 1.21426 0.96013 0.99132 0.95727 1.19001 0.93612 0.93607 0.95285 1.22610 0.95029 1.32898 1.15078 0.93594 1.27451 0.94388 0.98096 1.03897 1.70838 1.37902 1.31060 1.17956 0.82886 0.75601 0.74916 0.72247 1.19438 1.20313 1.20417 1.65513 1.54487 1.02666 1.01925 1.23162 0.98917 0.89906 0.97095 1.21861 1.00008 0.95994 0.93131 0.91815 1.21886 0.97009 0.98460 1.02211 1.21867 0.99296 0.93718 0.95138 0.91372 1.21912 0.95104 0.93969 0.94300 1.58696 1.50119 1.04785 1.25589 1.23291 0.98416 0.97977 0.89790 0.90901 0.91465 0.91930 0.93061 0.93267 0.98283 1.00801 0.93656 0.92304 0.93300 0.92625 0.90740 0.91634 0.94557 0.89869 0.84518 0.83547 0.91249 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.51 8.35 71.98 0.60 -3.91 16 2 C 0.07 2.55 2.55 44.92 0.11 2.67 16 3 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 4 C -0.09 -3.69 4.43 30.60 0.14 -3.55 16 5 C 0.02 1.22 4.23 29.85 0.13 1.35 16 6 C -0.62 -37.30 9.11 25.60 0.23 -37.07 16 7 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 8 C -0.04 -2.53 5.46 84.66 0.46 -2.06 16 9 N -0.94 -61.42 13.65 21.45 0.29 -61.13 16 10 Si 1.12 52.63 29.90 68.60 2.05 54.69 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 14 N -0.52 -17.96 4.84 -856.33 -4.14 -22.10 16 15 C 0.04 1.16 4.65 86.45 0.40 1.56 16 16 C -0.09 -2.29 3.65 -9.90 -0.04 -2.33 16 17 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 18 C -0.14 -2.55 7.91 71.98 0.57 -1.98 16 19 C -0.08 -1.91 3.29 -9.90 -0.03 -1.94 16 20 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 21 C 0.08 1.34 4.97 86.30 0.43 1.77 16 22 N -0.86 -13.84 9.62 -186.72 -1.80 -15.63 16 23 C 0.03 0.86 5.12 86.45 0.44 1.30 16 24 H 0.07 1.58 6.31 -2.39 -0.02 1.56 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.55 5.88 -2.39 -0.01 1.54 16 27 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.05 2.12 6.62 -2.38 -0.02 2.10 16 29 H 0.00 -0.07 7.50 -2.39 -0.02 -0.09 16 30 H -0.03 -1.58 8.01 -2.38 -0.02 -1.60 16 31 H 0.25 17.03 7.22 -92.71 -0.67 16.36 16 32 H 0.06 1.66 5.41 -2.39 -0.01 1.64 16 33 H 0.05 1.88 7.54 -2.39 -0.02 1.86 16 34 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.07 1.14 6.85 -2.39 -0.02 1.12 16 36 H 0.06 1.07 6.76 -2.39 -0.02 1.05 16 37 H 0.04 0.57 6.86 -2.39 -0.02 0.56 16 38 H 0.08 1.34 6.56 -2.39 -0.02 1.32 16 39 H 0.34 5.29 8.31 -89.69 -0.75 4.54 16 40 H 0.35 4.11 9.08 -89.69 -0.81 3.30 16 41 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.06 1.40 5.10 -2.39 -0.01 1.39 16 Total: -1.00 -70.32 311.80 -0.61 -70.92 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -0.46 Total: 17.44 kcal Atomic # 6 Polarization: -47.63 SS G_CDS: 3.45 Total: -44.18 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -5.65 Total: -98.87 kcal Atomic # 14 Polarization: 52.63 SS G_CDS: 2.05 Total: 54.69 kcal Total: -70.32 -0.61 -70.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246544674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.373 kcal (2) G-P(sol) polarization free energy of solvation -70.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds