Wall clock time and date at job start Thu Apr 9 2020 12:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47550 * 2 1 4 4 H 1.09000 * 109.47279 * 304.07070 * 3 2 1 5 5 C 1.50695 * 109.47701 * 184.06848 * 3 2 1 6 6 H 1.07999 * 120.00149 * 240.00614 * 5 3 2 7 7 C 1.37881 * 120.00067 * 59.99713 * 5 3 2 8 8 N 1.31515 * 119.99855 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00369 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47369 * 89.99760 * 9 7 5 11 11 H 1.48502 * 109.47324 * 210.00214 * 9 7 5 12 12 H 1.48506 * 109.46817 * 330.00391 * 9 7 5 13 13 N 1.46904 * 109.47218 * 64.06821 * 3 2 1 14 14 C 1.47804 * 111.00046 * 190.52864 * 13 3 2 15 15 C 1.45867 * 112.82573 * 153.82137 * 14 13 3 16 16 C 1.54505 * 111.59512 * 61.37407 * 15 14 13 17 17 C 1.50463 * 108.84949 * 282.79455 * 16 15 14 18 18 C 1.52996 * 108.77316 * 212.96497 * 17 16 15 19 19 N 1.46903 * 108.77155 * 331.24807 * 17 16 15 20 20 C 1.54284 * 113.02935 * 92.16144 * 17 16 15 21 21 C 1.44374 * 110.95218 * 68.63684 * 13 3 2 22 22 H 1.08999 * 109.46727 * 294.59553 * 1 2 3 23 23 H 1.09005 * 109.47076 * 54.59341 * 1 2 3 24 24 H 1.08991 * 109.47173 * 174.59579 * 1 2 3 25 25 H 1.09007 * 109.47079 * 239.99994 * 2 1 3 26 26 H 1.08997 * 109.47470 * 120.00401 * 2 1 3 27 27 H 0.96998 * 120.00133 * 180.02562 * 8 7 5 28 28 H 1.08995 * 108.79869 * 32.98946 * 14 13 3 29 29 H 1.08998 * 108.79324 * 274.64401 * 14 13 3 30 30 H 1.08991 * 109.05662 * 181.92239 * 15 14 13 31 31 H 1.08996 * 109.05209 * 300.83274 * 15 14 13 32 32 H 1.08998 * 109.57864 * 42.60444 * 16 15 14 33 33 H 1.09005 * 109.57539 * 162.85794 * 16 15 14 34 34 H 1.08999 * 109.47373 * 59.99520 * 18 17 16 35 35 H 1.09002 * 109.47100 * 180.02562 * 18 17 16 36 36 H 1.09008 * 109.46921 * 299.99594 * 18 17 16 37 37 H 1.00898 * 111.00088 * 300.00348 * 19 17 16 38 38 H 1.00897 * 110.99753 * 63.94932 * 19 17 16 39 39 H 1.09005 * 108.92000 * 79.02952 * 20 17 16 40 40 H 1.08998 * 108.92275 * 197.67696 * 20 17 16 41 41 H 1.08991 * 109.02646 * 98.75603 * 21 13 3 42 42 H 1.09001 * 108.95193 * 339.94675 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6184 1.9769 -0.8512 5 6 3.5436 1.4436 -0.1008 6 1 4.1370 1.8923 0.6821 7 6 4.1619 0.8717 -1.1925 8 7 3.4393 0.3256 -2.1461 9 14 6.0257 0.8726 -1.3172 10 1 6.5650 -0.3560 -0.6808 11 1 6.4262 0.9062 -2.7468 12 1 6.5676 2.0683 -0.6230 13 7 1.6323 2.1060 1.2456 14 6 1.8844 3.5608 1.1777 15 6 0.9998 4.3295 2.0463 16 6 1.1869 3.9460 3.5312 17 6 0.4894 2.6375 3.7869 18 6 -0.0520 2.6396 5.2179 19 7 -0.6398 2.5138 2.8554 20 6 1.4148 1.4157 3.6104 21 6 2.3317 1.5501 2.3796 22 1 -0.3633 0.4277 0.9344 23 1 -0.3633 0.5954 -0.8377 24 1 -0.3633 -1.0230 -0.0968 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8742 -0.0770 -2.9139 28 1 1.7436 3.8941 0.1496 29 1 2.9168 3.7523 1.4701 30 1 1.2145 5.3910 1.9231 31 1 -0.0342 4.1410 1.7576 32 1 2.2495 3.8423 3.7506 33 1 0.7570 4.7212 4.1656 34 1 -0.7555 3.4633 5.3391 35 1 -0.5597 1.6955 5.4156 36 1 0.7740 2.7612 5.9187 37 1 -1.2976 3.2683 2.9823 38 1 -0.3175 2.4719 1.9002 39 1 2.0331 1.3089 4.5017 40 1 0.8018 0.5215 3.4968 41 1 3.1711 2.1979 2.6319 42 1 2.7128 0.5645 2.1121 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246552523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:26 Heat of formation + Delta-G solvation = 4.627467 kcal Electronic energy + Delta-G solvation = -19353.126068 eV Core-core repulsion = 16753.938567 eV Total energy + Delta-G solvation = -2599.187502 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.56447 -36.20661 -33.19485 -32.08804 -31.04012 -29.21678 -28.17081 -26.37625 -24.94647 -22.96538 -22.54215 -20.22681 -19.09846 -18.05943 -16.18061 -15.81369 -15.30942 -14.82233 -14.43224 -14.30136 -13.58768 -13.25423 -12.99419 -12.59807 -12.34469 -12.14157 -11.96328 -11.75772 -11.44501 -11.20108 -11.18436 -10.98073 -10.73979 -10.63543 -10.37833 -10.16712 -9.95147 -9.88205 -9.72832 -9.46324 -9.35771 -9.06599 -8.36868 -8.02532 -7.17785 -6.00263 -4.13173 3.25127 3.32755 3.35106 4.38173 4.84209 5.09264 5.16756 5.24219 5.28952 5.47622 5.61455 5.76842 5.85881 5.95975 6.01496 6.14412 6.17023 6.23023 6.26057 6.43796 6.45898 6.55172 6.56487 6.62176 6.72598 6.74223 6.78928 6.87362 6.93197 7.19753 7.24920 7.39856 7.61912 7.78099 7.87935 8.02027 8.12454 8.28513 8.37121 8.50143 8.97307 9.54565 10.99252 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030334 B = 0.008049 C = 0.007367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.828123 B = 3477.908732 C = 3799.939940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C 0.215 3.785 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.520 5.520 14 C 0.055 3.945 15 C -0.124 4.124 16 C -0.142 4.142 17 C 0.131 3.869 18 C -0.140 4.140 19 N -0.846 5.846 20 C -0.100 4.100 21 C 0.063 3.937 22 H 0.055 0.945 23 H 0.036 0.964 24 H 0.023 0.977 25 H 0.090 0.910 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.061 0.939 29 H 0.031 0.969 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.318 0.682 38 H 0.372 0.628 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.025 0.975 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 4.810 9.217 11.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C 0.109 3.891 4 H 0.055 0.945 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.243 5.243 14 C -0.073 4.073 15 C -0.162 4.162 16 C -0.181 4.181 17 C 0.037 3.963 18 C -0.198 4.198 19 N -0.385 5.385 20 C -0.139 4.139 21 C -0.066 4.066 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.109 0.891 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.130 0.870 38 H 0.196 0.804 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.712 3.920 9.407 11.682 hybrid contribution 2.409 1.077 -0.601 2.707 sum -3.303 4.997 8.805 10.649 Atomic orbital electron populations 1.21740 0.98660 0.98434 1.00930 1.21585 0.92424 0.98943 1.01770 1.19415 0.92884 0.91197 0.85641 0.94515 1.21778 0.92711 1.37887 1.05834 0.92740 1.24914 0.97782 0.95077 0.95661 1.69875 1.34815 1.37987 1.09569 0.86693 0.86343 0.78336 0.77189 1.20709 1.21225 1.20173 1.61878 1.55983 1.01449 1.05029 1.20814 0.97202 0.90229 0.99042 1.20851 1.01510 0.98834 0.95050 1.22145 1.01511 0.98116 0.96351 1.20294 0.90864 0.93261 0.91836 1.21973 1.00130 1.01542 0.96110 1.59223 1.16307 1.50724 1.12264 1.22102 0.97081 0.97465 0.97211 1.21776 0.93572 1.00723 0.90544 0.92554 0.94454 0.95767 0.89146 0.94925 0.92905 0.92008 0.95048 0.92761 0.91459 0.92119 0.92903 0.93536 0.92400 0.93195 0.86999 0.80362 0.93127 0.91502 0.95667 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.73 37.16 0.36 -2.48 16 2 C -0.11 -2.53 5.16 -26.74 -0.14 -2.67 16 3 C 0.21 5.08 1.64 -68.87 -0.11 4.96 16 4 H 0.04 0.97 7.77 -51.93 -0.40 0.57 16 5 C -0.54 -14.14 7.13 -34.44 -0.25 -14.38 16 6 H 0.05 1.44 6.68 -52.49 -0.35 1.09 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.50 11.30 55.43 0.63 -23.87 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.52 -10.22 1.90 -232.86 -0.44 -10.66 16 14 C 0.06 1.02 4.40 -6.70 -0.03 0.99 16 15 C -0.12 -1.86 5.23 -29.32 -0.15 -2.01 16 16 C -0.14 -2.01 4.99 -27.21 -0.14 -2.14 16 17 C 0.13 1.90 0.87 -132.20 -0.11 1.79 16 18 C -0.14 -1.76 8.30 37.16 0.31 -1.45 16 19 N -0.85 -12.79 8.04 0.26 0.00 -12.79 16 20 C -0.10 -1.63 5.13 -25.50 -0.13 -1.76 16 21 C 0.06 1.22 3.68 -4.62 -0.02 1.20 16 22 H 0.06 1.10 7.36 -51.93 -0.38 0.72 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.09 2.37 5.97 -51.92 -0.31 2.06 16 26 H 0.03 0.75 6.43 -51.93 -0.33 0.42 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.06 1.21 7.57 -51.93 -0.39 0.81 16 29 H 0.03 0.62 7.09 -51.93 -0.37 0.25 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.99 5.37 -51.93 -0.28 0.71 16 32 H 0.06 0.91 7.15 -51.93 -0.37 0.54 16 33 H 0.05 0.67 7.69 -51.93 -0.40 0.27 16 34 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.32 4.27 8.35 -39.29 -0.33 3.94 16 38 H 0.37 6.25 4.33 -39.29 -0.17 6.08 16 39 H 0.05 0.75 7.98 -51.93 -0.41 0.34 16 40 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 41 H 0.03 0.50 6.19 -51.93 -0.32 0.18 16 42 H 0.07 1.60 5.51 -51.93 -0.29 1.32 16 LS Contribution 300.29 15.07 4.53 4.53 Total: -1.00 -25.89 300.29 -8.01 -33.91 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -7.20 Total: 9.19 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -0.50 Total: -16.23 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.18 Total: -47.32 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -25.89 -8.01 -33.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246552523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.533 kcal (2) G-P(sol) polarization free energy of solvation -25.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds