Wall clock time and date at job start Thu Apr 9 2020 12:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47550 * 2 1 4 4 H 1.09000 * 109.47279 * 304.07070 * 3 2 1 5 5 C 1.50695 * 109.47701 * 184.06848 * 3 2 1 6 6 H 1.07999 * 120.00149 * 240.00614 * 5 3 2 7 7 C 1.37881 * 120.00067 * 59.99713 * 5 3 2 8 8 N 1.31515 * 119.99855 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00369 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47369 * 89.99760 * 9 7 5 11 11 H 1.48502 * 109.47324 * 210.00214 * 9 7 5 12 12 H 1.48506 * 109.46817 * 330.00391 * 9 7 5 13 13 N 1.46904 * 109.47218 * 64.06821 * 3 2 1 14 14 C 1.47804 * 111.00046 * 190.52864 * 13 3 2 15 15 C 1.45867 * 112.82573 * 153.82137 * 14 13 3 16 16 C 1.54505 * 111.59512 * 61.37407 * 15 14 13 17 17 C 1.50463 * 108.84949 * 282.79455 * 16 15 14 18 18 C 1.52996 * 108.77316 * 212.96497 * 17 16 15 19 19 N 1.46903 * 108.77155 * 331.24807 * 17 16 15 20 20 C 1.54284 * 113.02935 * 92.16144 * 17 16 15 21 21 C 1.44374 * 110.95218 * 68.63684 * 13 3 2 22 22 H 1.08999 * 109.46727 * 294.59553 * 1 2 3 23 23 H 1.09005 * 109.47076 * 54.59341 * 1 2 3 24 24 H 1.08991 * 109.47173 * 174.59579 * 1 2 3 25 25 H 1.09007 * 109.47079 * 239.99994 * 2 1 3 26 26 H 1.08997 * 109.47470 * 120.00401 * 2 1 3 27 27 H 0.96998 * 120.00133 * 180.02562 * 8 7 5 28 28 H 1.08995 * 108.79869 * 32.98946 * 14 13 3 29 29 H 1.08998 * 108.79324 * 274.64401 * 14 13 3 30 30 H 1.08991 * 109.05662 * 181.92239 * 15 14 13 31 31 H 1.08996 * 109.05209 * 300.83274 * 15 14 13 32 32 H 1.08998 * 109.57864 * 42.60444 * 16 15 14 33 33 H 1.09005 * 109.57539 * 162.85794 * 16 15 14 34 34 H 1.08999 * 109.47373 * 59.99520 * 18 17 16 35 35 H 1.09002 * 109.47100 * 180.02562 * 18 17 16 36 36 H 1.09008 * 109.46921 * 299.99594 * 18 17 16 37 37 H 1.00898 * 111.00088 * 300.00348 * 19 17 16 38 38 H 1.00897 * 110.99753 * 63.94932 * 19 17 16 39 39 H 1.09005 * 108.92000 * 79.02952 * 20 17 16 40 40 H 1.08998 * 108.92275 * 197.67696 * 20 17 16 41 41 H 1.08991 * 109.02646 * 98.75603 * 21 13 3 42 42 H 1.09001 * 108.95193 * 339.94675 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6184 1.9769 -0.8512 5 6 3.5436 1.4436 -0.1008 6 1 4.1370 1.8923 0.6821 7 6 4.1619 0.8717 -1.1925 8 7 3.4393 0.3256 -2.1461 9 14 6.0257 0.8726 -1.3172 10 1 6.5650 -0.3560 -0.6808 11 1 6.4262 0.9062 -2.7468 12 1 6.5676 2.0683 -0.6230 13 7 1.6323 2.1060 1.2456 14 6 1.8844 3.5608 1.1777 15 6 0.9998 4.3295 2.0463 16 6 1.1869 3.9460 3.5312 17 6 0.4894 2.6375 3.7869 18 6 -0.0520 2.6396 5.2179 19 7 -0.6398 2.5138 2.8554 20 6 1.4148 1.4157 3.6104 21 6 2.3317 1.5501 2.3796 22 1 -0.3633 0.4277 0.9344 23 1 -0.3633 0.5954 -0.8377 24 1 -0.3633 -1.0230 -0.0968 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8742 -0.0770 -2.9139 28 1 1.7436 3.8941 0.1496 29 1 2.9168 3.7523 1.4701 30 1 1.2145 5.3910 1.9231 31 1 -0.0342 4.1410 1.7576 32 1 2.2495 3.8423 3.7506 33 1 0.7570 4.7212 4.1656 34 1 -0.7555 3.4633 5.3391 35 1 -0.5597 1.6955 5.4156 36 1 0.7740 2.7612 5.9187 37 1 -1.2976 3.2683 2.9823 38 1 -0.3175 2.4719 1.9002 39 1 2.0331 1.3089 4.5017 40 1 0.8018 0.5215 3.4968 41 1 3.1711 2.1979 2.6319 42 1 2.7128 0.5645 2.1121 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246552523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:25 Heat of formation + Delta-G solvation = -9.970981 kcal Electronic energy + Delta-G solvation = -19353.759104 eV Core-core repulsion = 16753.938567 eV Total energy + Delta-G solvation = -2599.820538 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.97050 -37.78072 -34.85787 -33.76543 -32.73575 -30.49979 -29.54955 -28.02942 -26.46231 -24.71619 -23.97807 -21.80166 -20.82323 -19.37729 -18.11538 -17.37764 -16.69339 -16.43692 -15.96718 -15.66487 -15.09393 -14.83483 -14.67581 -13.99271 -13.76409 -13.70650 -13.28414 -13.17071 -13.10529 -12.92831 -12.65759 -12.59624 -12.31788 -12.23829 -12.03855 -11.63744 -11.54945 -11.42762 -11.19546 -11.19238 -10.93362 -10.91045 -10.42487 -9.26881 -8.85108 -8.03457 -6.25610 1.34814 1.37298 1.45051 2.38723 3.14831 3.34533 3.86376 3.96877 4.10282 4.25374 4.37367 4.40804 4.53941 4.60897 4.65162 4.79445 4.81351 4.90701 4.97168 4.99494 5.05153 5.11951 5.16947 5.22696 5.24832 5.29141 5.43505 5.48165 5.49489 5.52050 5.56270 5.59787 5.65643 5.82929 6.11510 6.21270 6.41117 6.67747 6.77811 6.96656 7.09148 7.45468 8.91310 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030334 B = 0.008049 C = 0.007367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.828123 B = 3477.908732 C = 3799.939940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.222 3.778 4 H 0.005 0.995 5 C -0.550 4.550 6 H 0.046 0.954 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.944 3.056 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.275 1.275 13 N -0.506 5.506 14 C 0.060 3.940 15 C -0.120 4.120 16 C -0.136 4.136 17 C 0.129 3.871 18 C -0.133 4.133 19 N -0.852 5.852 20 C -0.094 4.094 21 C 0.069 3.931 22 H 0.065 0.935 23 H 0.033 0.967 24 H 0.038 0.962 25 H 0.059 0.941 26 H 0.027 0.973 27 H 0.261 0.739 28 H 0.044 0.956 29 H 0.014 0.986 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.331 0.669 38 H 0.361 0.639 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.016 0.984 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.696 5.716 10.980 13.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.140 4.140 3 C 0.115 3.885 4 H 0.023 0.977 5 C -0.590 4.590 6 H 0.064 0.936 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.230 5.230 14 C -0.068 4.068 15 C -0.158 4.158 16 C -0.176 4.176 17 C 0.036 3.964 18 C -0.191 4.191 19 N -0.390 5.390 20 C -0.132 4.132 21 C -0.061 4.061 22 H 0.084 0.916 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.144 0.856 38 H 0.184 0.816 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.345 4.838 11.197 13.749 hybrid contribution 2.615 0.804 -1.154 2.969 sum -3.730 5.642 10.043 12.108 Atomic orbital electron populations 1.21587 0.96155 0.99435 1.01200 1.21406 0.94563 0.98137 0.99910 1.19170 0.91471 0.91453 0.86444 0.97671 1.22014 0.94100 1.37377 1.05468 0.93570 1.25588 1.01592 0.95041 0.95577 1.69997 1.36190 1.38668 1.09953 0.85787 0.81818 0.78246 0.77132 1.20365 1.20892 1.20005 1.61932 1.55393 1.02072 1.03554 1.20861 0.97261 0.89635 0.99045 1.20785 1.00843 0.99117 0.95076 1.22108 1.01069 0.98609 0.95788 1.20323 0.90454 0.92421 0.93185 1.21900 1.00774 1.01994 0.94439 1.59194 1.16723 1.51583 1.11548 1.22042 0.96955 0.98228 0.96013 1.21739 0.94151 0.98747 0.91433 0.91642 0.94816 0.94246 0.92205 0.95440 0.92966 0.93772 0.96777 0.90922 0.90717 0.93081 0.90322 0.92019 0.92821 0.92044 0.85601 0.81608 0.91411 0.92532 0.96561 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.73 71.98 0.70 -4.39 16 2 C -0.10 -4.84 5.16 30.59 0.16 -4.68 16 3 C 0.22 10.80 1.64 44.16 0.07 10.88 16 4 H 0.01 0.29 7.77 -2.39 -0.02 0.28 16 5 C -0.55 -29.45 7.13 25.60 0.18 -29.26 16 6 H 0.05 2.50 6.68 -2.91 -0.02 2.48 16 7 C 0.02 1.20 5.29 84.66 0.45 1.65 16 8 N -0.91 -51.64 11.30 21.45 0.24 -51.39 16 9 Si 0.94 43.60 29.54 68.60 2.03 45.63 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.51 -20.09 1.90 -890.64 -1.70 -21.78 16 14 C 0.06 2.21 4.40 83.94 0.37 2.58 16 15 C -0.12 -3.35 5.23 28.92 0.15 -3.20 16 16 C -0.14 -3.46 4.99 30.29 0.15 -3.31 16 17 C 0.13 3.41 0.87 3.14 0.00 3.41 16 18 C -0.13 -2.86 8.30 71.98 0.60 -2.26 16 19 N -0.85 -23.68 8.04 -153.09 -1.23 -24.91 16 20 C -0.09 -2.92 5.13 31.39 0.16 -2.76 16 21 C 0.07 2.64 3.68 87.14 0.32 2.96 16 22 H 0.06 2.50 7.36 -2.39 -0.02 2.49 16 23 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 3.23 5.97 -2.38 -0.01 3.22 16 26 H 0.03 1.30 6.43 -2.39 -0.02 1.28 16 27 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 28 H 0.04 1.76 7.57 -2.39 -0.02 1.74 16 29 H 0.01 0.56 7.09 -2.39 -0.02 0.54 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 2.02 5.37 -2.39 -0.01 2.01 16 32 H 0.05 1.41 7.15 -2.39 -0.02 1.39 16 33 H 0.08 1.64 7.69 -2.38 -0.02 1.62 16 34 H 0.06 1.15 8.07 -2.39 -0.02 1.13 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.18 8.14 -2.38 -0.02 1.17 16 37 H 0.33 7.82 8.35 -89.70 -0.75 7.07 16 38 H 0.36 11.56 4.33 -89.70 -0.39 11.18 16 39 H 0.07 1.87 7.98 -2.38 -0.02 1.85 16 40 H 0.06 1.89 8.12 -2.39 -0.02 1.87 16 41 H 0.02 0.65 6.19 -2.39 -0.01 0.63 16 42 H 0.05 2.05 5.51 -2.39 -0.01 2.03 16 Total: -1.00 -56.15 300.29 2.52 -53.63 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: -0.14 Total: 27.19 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 3.31 Total: -28.37 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -2.68 Total: -98.08 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -56.15 2.52 -53.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246552523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.662 kcal (2) G-P(sol) polarization free energy of solvation -56.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds