Wall clock time and date at job start Thu Apr 9 2020 12:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46940 * 2 1 4 4 C 1.53005 * 109.46822 * 240.00543 * 2 1 3 5 5 C 1.53000 * 109.47516 * 65.57242 * 4 2 1 6 6 C 1.50693 * 109.47348 * 174.74239 * 5 4 2 7 7 H 1.08007 * 119.99781 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00484 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99381 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00412 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47096 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47060 * 120.00005 * 10 8 6 13 13 H 1.48501 * 109.46895 * 240.00244 * 10 8 6 14 14 N 1.46897 * 109.47204 * 120.00349 * 2 1 3 15 15 C 1.46849 * 110.99631 * 191.05674 * 14 2 1 16 16 C 1.53039 * 109.52142 * 174.16174 * 15 14 2 17 17 C 1.53120 * 109.27867 * 59.17651 * 16 15 14 18 18 H 1.09007 * 109.52299 * 62.25200 * 17 16 15 19 19 C 1.52999 * 109.52215 * 182.37839 * 17 16 15 20 20 C 1.53121 * 109.16399 * 302.34847 * 17 16 15 21 21 H 1.08998 * 109.50546 * 177.63867 * 20 17 16 22 22 N 1.46902 * 109.50024 * 297.71514 * 20 17 16 23 23 C 1.46848 * 111.00030 * 66.84742 * 14 2 1 24 24 H 1.09002 * 109.46940 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46798 * 299.99796 * 1 2 3 26 26 H 1.08995 * 109.47329 * 59.99429 * 1 2 3 27 27 H 1.09003 * 109.46968 * 305.57120 * 4 2 1 28 28 H 1.08996 * 109.47030 * 185.57648 * 4 2 1 29 29 H 1.09000 * 109.47143 * 294.74201 * 5 4 2 30 30 H 1.09001 * 109.46770 * 54.73894 * 5 4 2 31 31 H 0.97000 * 119.99940 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.46364 * 294.17213 * 15 14 2 33 33 H 1.08989 * 109.46476 * 54.15738 * 15 14 2 34 34 H 1.08998 * 109.50521 * 179.12108 * 16 15 14 35 35 H 1.08997 * 109.50079 * 299.20050 * 16 15 14 36 36 H 1.09003 * 109.47530 * 60.00179 * 19 17 16 37 37 H 1.09006 * 109.47326 * 180.02562 * 19 17 16 38 38 H 1.08996 * 109.47272 * 299.99930 * 19 17 16 39 39 H 1.00906 * 110.99993 * 179.97438 * 22 20 17 40 40 H 1.00902 * 110.99666 * 303.94922 * 22 20 17 41 41 H 1.08999 * 109.46283 * 305.85431 * 23 14 2 42 42 H 1.09002 * 109.46113 * 65.82554 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6476 0.0765 -2.4946 6 6 2.2589 -0.5634 -3.7143 7 1 2.8663 -1.4506 -3.6117 8 6 2.0421 -0.0169 -4.9615 9 7 1.3021 1.0631 -5.0865 10 14 2.7994 -0.8105 -6.4735 11 1 3.5825 -2.0046 -6.0661 12 1 1.7219 -1.2203 -7.4095 13 1 3.6963 0.1630 -7.1467 14 7 2.0197 -0.6925 1.1994 15 6 3.4637 -0.4886 1.3720 16 6 3.9108 -1.0987 2.7024 17 6 3.5833 -2.5944 2.7082 18 1 4.1381 -3.0919 1.9125 19 6 3.9740 -3.1982 4.0586 20 6 2.0810 -2.7809 2.4782 21 1 1.8481 -3.8451 2.4394 22 7 1.3351 -2.1555 3.5784 23 6 1.6869 -2.1221 1.1543 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.5974 -1.7160 -1.3007 28 1 3.1253 -0.8085 -1.2009 29 1 0.5621 0.0843 -2.5940 30 1 2.0112 1.0997 -2.4002 31 1 1.1492 1.4473 -5.9639 32 1 3.9989 -0.9702 0.5537 33 1 3.6824 0.5791 1.3706 34 1 4.9853 -0.9609 2.8231 35 1 3.3867 -0.6077 3.5223 36 1 3.4171 -2.7018 4.8534 37 1 3.7409 -4.2631 4.0617 38 1 5.0426 -3.0601 4.2228 39 1 0.3404 -2.2649 3.4490 40 1 1.6271 -2.5266 4.4701 41 1 0.6153 -2.2407 0.9945 42 1 2.2305 -2.5959 0.3369 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246562019.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:35 Heat of formation + Delta-G solvation = -19.583206 kcal Electronic energy + Delta-G solvation = -18263.449214 eV Core-core repulsion = 15663.211858 eV Total energy + Delta-G solvation = -2600.237355 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.55342 -36.36328 -33.35141 -32.57384 -31.42991 -29.16983 -28.44629 -26.85267 -25.00087 -22.85200 -22.27500 -21.30838 -19.55456 -18.29506 -16.49012 -15.99161 -15.57436 -14.93694 -14.49802 -14.45613 -14.05719 -13.65085 -13.23239 -13.10813 -12.77249 -12.56804 -12.25428 -12.12427 -11.93318 -11.39528 -11.29762 -11.12089 -10.97669 -10.64470 -10.62031 -10.53334 -10.36399 -10.14991 -10.03998 -9.53798 -9.35928 -9.08373 -8.45227 -8.31627 -7.58942 -5.97467 -3.99596 3.31209 3.38650 3.42759 4.29238 4.47604 4.65517 4.75537 4.87150 4.95950 5.32443 5.37859 5.45118 5.56124 5.59130 5.65124 5.71544 5.74370 5.84208 5.98263 6.00172 6.02567 6.09196 6.15840 6.19786 6.29860 6.41771 6.49953 6.58580 6.67996 6.79243 6.89611 7.12264 7.24168 7.53854 7.64549 7.67647 7.72426 7.88320 8.03039 8.46990 9.07720 9.64199 11.13506 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.036096 B = 0.005120 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.519234 B = 5467.338072 C = 5794.616600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.077 3.923 3 H 0.075 0.925 4 C -0.138 4.138 5 C 0.025 3.975 6 C -0.519 4.519 7 H 0.052 0.948 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.889 3.111 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.512 5.512 15 C 0.055 3.945 16 C -0.100 4.100 17 C -0.089 4.089 18 H 0.066 0.934 19 C -0.147 4.147 20 C 0.101 3.899 21 H 0.029 0.971 22 N -0.825 5.825 23 C 0.059 3.941 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.019 0.981 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.337 0.663 40 H 0.330 0.670 41 H 0.072 0.928 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.991 -6.869 17.371 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.031 4.031 3 H 0.093 0.907 4 C -0.177 4.177 5 C -0.012 4.012 6 C -0.557 4.557 7 H 0.070 0.930 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.717 3.283 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.236 5.236 15 C -0.073 4.073 16 C -0.138 4.138 17 C -0.108 4.108 18 H 0.085 0.915 19 C -0.205 4.205 20 C -0.011 4.011 21 H 0.047 0.953 22 N -0.357 5.357 23 C -0.070 4.070 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.091 0.909 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.025 -5.865 17.409 18.482 hybrid contribution 0.485 -1.760 -1.581 2.415 sum 2.510 -7.625 15.828 17.747 Atomic orbital electron populations 1.21786 0.94858 1.01176 1.01471 1.21847 0.95558 0.97910 0.87772 0.90664 1.22249 0.99451 0.99543 0.96461 1.19071 0.96788 0.94918 0.90448 1.21316 1.30914 1.11562 0.91905 0.92992 1.25014 0.95359 0.95031 0.99016 1.69974 1.38920 1.21115 1.23460 0.86585 0.79090 0.79388 0.83236 1.19858 1.21015 1.21017 1.62129 1.13394 1.09921 1.38141 1.22019 0.88646 1.00421 0.96195 1.21503 0.99254 0.94350 0.98682 1.21217 0.95041 0.97154 0.97374 0.91547 1.21832 1.01320 0.99885 0.97450 1.21367 0.93571 0.94173 0.91994 0.95277 1.58564 1.08661 1.64805 1.03620 1.22090 1.00840 0.89370 0.94658 0.93525 0.93028 0.91591 0.93534 0.93609 0.96283 0.96783 0.93114 0.95097 0.91240 0.92769 0.90172 0.92183 0.93346 0.92729 0.84993 0.85619 0.90946 0.94234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.91 37.16 0.33 -1.97 16 2 C 0.08 1.38 2.38 -67.71 -0.16 1.22 16 3 H 0.08 1.42 7.97 -51.93 -0.41 1.00 16 4 C -0.14 -2.91 3.75 -26.73 -0.10 -3.01 16 5 C 0.03 0.66 4.61 -27.89 -0.13 0.53 16 6 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 7 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 10 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 N -0.51 -7.97 4.45 -226.69 -1.01 -8.97 16 15 C 0.06 0.82 5.16 -3.83 -0.02 0.80 16 16 C -0.10 -1.22 5.21 -26.65 -0.14 -1.36 16 17 C -0.09 -1.00 2.61 -90.50 -0.24 -1.23 16 18 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.15 -1.32 8.83 37.16 0.33 -0.99 16 20 C 0.10 1.17 3.15 -67.63 -0.21 0.96 16 21 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 22 N -0.83 -8.68 8.42 -4.60 -0.04 -8.72 16 23 C 0.06 0.85 4.15 -3.83 -0.02 0.83 16 24 H 0.05 0.75 6.46 -51.93 -0.34 0.42 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.22 6.70 -51.93 -0.35 0.87 16 27 H 0.05 0.98 6.80 -51.93 -0.35 0.63 16 28 H 0.05 0.99 6.64 -51.93 -0.34 0.64 16 29 H 0.02 0.52 6.84 -51.93 -0.36 0.16 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.03 0.50 6.80 -51.93 -0.35 0.14 16 33 H 0.07 1.03 8.00 -51.93 -0.42 0.62 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.04 7.73 -51.93 -0.40 0.64 16 36 H 0.06 0.51 6.54 -51.93 -0.34 0.17 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.34 3.33 9.04 -39.29 -0.36 2.97 16 40 H 0.33 2.91 6.96 -39.29 -0.27 2.63 16 41 H 0.07 1.05 6.26 -51.93 -0.32 0.72 16 42 H 0.04 0.63 6.70 -51.93 -0.35 0.28 16 LS Contribution 312.82 15.07 4.71 4.71 Total: -1.00 -30.06 312.82 -8.84 -38.90 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.46 Total: 1.56 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -0.77 Total: -17.96 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: -0.31 Total: -44.18 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.06 -8.84 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246562019.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.322 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds