Wall clock time and date at job start Thu Apr 9 2020 12:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46940 * 2 1 4 4 C 1.53005 * 109.46822 * 240.00543 * 2 1 3 5 5 C 1.53000 * 109.47516 * 65.57242 * 4 2 1 6 6 C 1.50693 * 109.47348 * 174.74239 * 5 4 2 7 7 H 1.08007 * 119.99781 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00484 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99381 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00412 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47096 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47060 * 120.00005 * 10 8 6 13 13 H 1.48501 * 109.46895 * 240.00244 * 10 8 6 14 14 N 1.46897 * 109.47204 * 120.00349 * 2 1 3 15 15 C 1.46849 * 110.99631 * 191.05674 * 14 2 1 16 16 C 1.53039 * 109.52142 * 174.16174 * 15 14 2 17 17 C 1.53120 * 109.27867 * 59.17651 * 16 15 14 18 18 H 1.09007 * 109.52299 * 62.25200 * 17 16 15 19 19 C 1.52999 * 109.52215 * 182.37839 * 17 16 15 20 20 C 1.53121 * 109.16399 * 302.34847 * 17 16 15 21 21 H 1.08998 * 109.50546 * 177.63867 * 20 17 16 22 22 N 1.46902 * 109.50024 * 297.71514 * 20 17 16 23 23 C 1.46848 * 111.00030 * 66.84742 * 14 2 1 24 24 H 1.09002 * 109.46940 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46798 * 299.99796 * 1 2 3 26 26 H 1.08995 * 109.47329 * 59.99429 * 1 2 3 27 27 H 1.09003 * 109.46968 * 305.57120 * 4 2 1 28 28 H 1.08996 * 109.47030 * 185.57648 * 4 2 1 29 29 H 1.09000 * 109.47143 * 294.74201 * 5 4 2 30 30 H 1.09001 * 109.46770 * 54.73894 * 5 4 2 31 31 H 0.97000 * 119.99940 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.46364 * 294.17213 * 15 14 2 33 33 H 1.08989 * 109.46476 * 54.15738 * 15 14 2 34 34 H 1.08998 * 109.50521 * 179.12108 * 16 15 14 35 35 H 1.08997 * 109.50079 * 299.20050 * 16 15 14 36 36 H 1.09003 * 109.47530 * 60.00179 * 19 17 16 37 37 H 1.09006 * 109.47326 * 180.02562 * 19 17 16 38 38 H 1.08996 * 109.47272 * 299.99930 * 19 17 16 39 39 H 1.00906 * 110.99993 * 179.97438 * 22 20 17 40 40 H 1.00902 * 110.99666 * 303.94922 * 22 20 17 41 41 H 1.08999 * 109.46283 * 305.85431 * 23 14 2 42 42 H 1.09002 * 109.46113 * 65.82554 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6476 0.0765 -2.4946 6 6 2.2589 -0.5634 -3.7143 7 1 2.8663 -1.4506 -3.6117 8 6 2.0421 -0.0169 -4.9615 9 7 1.3021 1.0631 -5.0865 10 14 2.7994 -0.8105 -6.4735 11 1 3.5825 -2.0046 -6.0661 12 1 1.7219 -1.2203 -7.4095 13 1 3.6963 0.1630 -7.1467 14 7 2.0197 -0.6925 1.1994 15 6 3.4637 -0.4886 1.3720 16 6 3.9108 -1.0987 2.7024 17 6 3.5833 -2.5944 2.7082 18 1 4.1381 -3.0919 1.9125 19 6 3.9740 -3.1982 4.0586 20 6 2.0810 -2.7809 2.4782 21 1 1.8481 -3.8451 2.4394 22 7 1.3351 -2.1555 3.5784 23 6 1.6869 -2.1221 1.1543 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.5974 -1.7160 -1.3007 28 1 3.1253 -0.8085 -1.2009 29 1 0.5621 0.0843 -2.5940 30 1 2.0112 1.0997 -2.4002 31 1 1.1492 1.4473 -5.9639 32 1 3.9989 -0.9702 0.5537 33 1 3.6824 0.5791 1.3706 34 1 4.9853 -0.9609 2.8231 35 1 3.3867 -0.6077 3.5223 36 1 3.4171 -2.7018 4.8534 37 1 3.7409 -4.2631 4.0617 38 1 5.0426 -3.0601 4.2228 39 1 0.3404 -2.2649 3.4490 40 1 1.6271 -2.5266 4.4701 41 1 0.6153 -2.2407 0.9945 42 1 2.2305 -2.5959 0.3369 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246562019.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:35 Heat of formation + Delta-G solvation = -39.839481 kcal Electronic energy + Delta-G solvation = -18264.327592 eV Core-core repulsion = 15663.211858 eV Total energy + Delta-G solvation = -2601.115733 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.72707 -37.66869 -35.30692 -33.70664 -32.92898 -30.73019 -29.61129 -27.91713 -26.98870 -24.02129 -23.55793 -22.98356 -20.85930 -19.47727 -18.59410 -16.99581 -16.92071 -16.45877 -16.08263 -15.71294 -15.36244 -15.03387 -14.66293 -14.30192 -14.02702 -13.84591 -13.67208 -13.33456 -13.21990 -13.11368 -12.87276 -12.54419 -12.40888 -12.39308 -12.18337 -11.85662 -11.57576 -11.45885 -11.39941 -11.25485 -11.20445 -10.94457 -10.55894 -9.28810 -8.97874 -8.21111 -6.33281 1.36416 1.36653 1.49838 2.38183 3.04374 3.10534 3.73963 3.79827 3.91777 4.05221 4.07596 4.27407 4.38398 4.45682 4.50759 4.57060 4.66182 4.74479 4.77886 4.86626 4.89030 4.92197 4.95909 5.05028 5.06820 5.16447 5.22328 5.24648 5.30917 5.35785 5.40323 5.49705 5.62580 5.73587 5.83330 6.21167 6.27796 6.33452 6.52268 6.82532 6.83336 7.35750 8.89634 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.036096 B = 0.005120 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.519234 B = 5467.338072 C = 5794.616600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.084 3.916 3 H 0.063 0.937 4 C -0.119 4.119 5 C 0.032 3.968 6 C -0.544 4.544 7 H 0.052 0.948 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.963 3.037 11 H -0.265 1.265 12 H -0.275 1.275 13 H -0.277 1.277 14 N -0.504 5.504 15 C 0.051 3.949 16 C -0.091 4.091 17 C -0.090 4.090 18 H 0.057 0.943 19 C -0.140 4.140 20 C 0.107 3.893 21 H 0.041 0.959 22 N -0.830 5.830 23 C 0.056 3.944 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.037 0.963 29 H 0.000 1.000 30 H -0.013 1.013 31 H 0.264 0.736 32 H 0.014 0.986 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.342 0.658 40 H 0.343 0.657 41 H 0.072 0.928 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 -8.255 18.526 20.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.025 4.025 3 H 0.081 0.919 4 C -0.158 4.158 5 C -0.005 4.005 6 C -0.583 4.583 7 H 0.070 0.930 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.189 1.189 12 H -0.201 1.201 13 H -0.202 1.202 14 N -0.227 5.227 15 C -0.078 4.078 16 C -0.129 4.129 17 C -0.109 4.109 18 H 0.075 0.925 19 C -0.198 4.198 20 C -0.005 4.005 21 H 0.059 0.941 22 N -0.363 5.363 23 C -0.072 4.072 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.018 0.982 30 H 0.005 0.995 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.090 0.910 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 2.564 -7.261 18.593 20.124 hybrid contribution 0.308 -1.298 -1.935 2.351 sum 2.872 -8.560 16.657 18.947 Atomic orbital electron populations 1.21685 0.93909 1.01631 1.01223 1.21686 0.96285 0.97156 0.87370 0.91851 1.22026 0.98903 0.99015 0.95892 1.18939 0.95243 0.94055 0.92310 1.21711 1.31367 1.11890 0.93283 0.93014 1.25944 0.95659 0.95494 1.02490 1.70097 1.39970 1.22440 1.24584 0.85438 0.78397 0.78623 0.78835 1.18949 1.20080 1.20210 1.62192 1.13921 1.10700 1.35845 1.22120 0.87941 1.00331 0.97361 1.21437 0.99962 0.94902 0.96572 1.21226 0.94635 0.96382 0.98670 0.92464 1.21765 1.01811 1.00314 0.95871 1.21249 0.93994 0.94430 0.90798 0.94101 1.58500 1.08990 1.64899 1.03877 1.22172 1.00593 0.88413 0.96060 0.92709 0.91218 0.93784 0.93498 0.94399 0.98187 0.99475 0.92717 0.96762 0.91712 0.91450 0.90325 0.91416 0.92411 0.92139 0.84439 0.84161 0.90981 0.96064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 8.91 71.98 0.64 -3.67 16 2 C 0.08 3.05 2.38 44.92 0.11 3.15 16 3 H 0.06 2.46 7.97 -2.39 -0.02 2.44 16 4 C -0.12 -5.18 3.75 30.60 0.11 -5.07 16 5 C 0.03 1.75 4.61 29.85 0.14 1.89 16 6 C -0.54 -32.10 9.11 25.60 0.23 -31.87 16 7 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 8 C 0.00 0.12 5.46 84.65 0.46 0.58 16 9 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 10 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 N -0.50 -15.42 4.45 -871.12 -3.88 -19.29 16 15 C 0.05 1.48 5.16 86.33 0.45 1.93 16 16 C -0.09 -2.07 5.21 30.65 0.16 -1.91 16 17 C -0.09 -1.84 2.61 -10.71 -0.03 -1.87 16 18 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 19 C -0.14 -2.08 8.83 71.98 0.64 -1.45 16 20 C 0.11 2.28 3.15 44.97 0.14 2.42 16 21 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 22 N -0.83 -15.35 8.42 -168.46 -1.42 -16.76 16 23 C 0.06 1.57 4.15 86.32 0.36 1.93 16 24 H 0.05 1.75 6.46 -2.39 -0.02 1.73 16 25 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 26 H 0.04 1.67 6.70 -2.39 -0.02 1.66 16 27 H 0.05 2.01 6.80 -2.39 -0.02 2.00 16 28 H 0.04 1.68 6.64 -2.39 -0.02 1.66 16 29 H 0.00 -0.01 6.84 -2.39 -0.02 -0.03 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.01 0.46 6.80 -2.39 -0.02 0.45 16 33 H 0.06 1.93 8.00 -2.39 -0.02 1.91 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.86 7.73 -2.39 -0.02 1.84 16 36 H 0.07 0.91 6.54 -2.39 -0.02 0.90 16 37 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.34 5.90 9.04 -89.69 -0.81 5.09 16 40 H 0.34 4.97 6.96 -89.69 -0.62 4.35 16 41 H 0.07 2.00 6.26 -2.39 -0.01 1.99 16 42 H 0.02 0.67 6.70 -2.39 -0.02 0.66 16 Total: -1.00 -64.68 312.82 -0.02 -64.70 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -0.44 Total: 15.34 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 3.41 Total: -33.94 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -5.01 Total: -93.36 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -64.68 -0.02 -64.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246562019.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.860 kcal (2) G-P(sol) polarization free energy of solvation -64.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds