Wall clock time and date at job start Thu Apr 9 2020 12:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47155 * 2 1 4 4 C 1.52994 * 109.47757 * 120.00247 * 2 1 3 5 5 C 1.53000 * 109.47540 * 182.68443 * 4 2 1 6 6 C 1.50703 * 109.47273 * 174.94851 * 5 4 2 7 7 H 1.07992 * 119.99693 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99839 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00050 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99792 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47163 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47268 * 120.00114 * 10 8 6 13 13 H 1.48507 * 109.47102 * 240.00096 * 10 8 6 14 14 N 1.46900 * 109.47246 * 240.00422 * 2 1 3 15 15 C 1.46850 * 110.99869 * 70.87031 * 14 2 1 16 16 C 1.53043 * 109.52149 * 174.16410 * 15 14 2 17 17 C 1.53115 * 109.27702 * 59.18350 * 16 15 14 18 18 H 1.09001 * 109.52650 * 62.24588 * 17 16 15 19 19 C 1.53002 * 109.52400 * 182.37838 * 17 16 15 20 20 C 1.53127 * 109.16024 * 302.34312 * 17 16 15 21 21 H 1.09001 * 109.49943 * 177.59889 * 20 17 16 22 22 N 1.46901 * 109.50017 * 297.71787 * 20 17 16 23 23 C 1.46852 * 110.99828 * 306.66744 * 14 2 1 24 24 H 1.09007 * 109.46795 * 299.99777 * 1 2 3 25 25 H 1.09000 * 109.47155 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47417 * 59.99710 * 1 2 3 27 27 H 1.09000 * 109.47007 * 302.68469 * 4 2 1 28 28 H 1.08996 * 109.47100 * 62.68287 * 4 2 1 29 29 H 1.09000 * 109.47269 * 294.94765 * 5 4 2 30 30 H 1.09004 * 109.47086 * 54.95126 * 5 4 2 31 31 H 0.96993 * 119.99525 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.46215 * 294.18151 * 15 14 2 33 33 H 1.09003 * 109.46278 * 54.15851 * 15 14 2 34 34 H 1.08997 * 109.49906 * 179.12350 * 16 15 14 35 35 H 1.09000 * 109.49965 * 299.23978 * 16 15 14 36 36 H 1.08997 * 109.47202 * 59.99477 * 19 17 16 37 37 H 1.08997 * 109.47540 * 180.02562 * 19 17 16 38 38 H 1.09006 * 109.46529 * 300.00114 * 19 17 16 39 39 H 1.00900 * 110.99598 * 180.02562 * 22 20 17 40 40 H 1.00902 * 110.99754 * 303.94650 * 22 20 17 41 41 H 1.09000 * 109.45897 * 305.85336 * 23 14 2 42 42 H 1.08999 * 109.46143 * 65.81954 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5686 -0.6630 1.2833 6 6 4.0655 -1.2634 2.5732 7 1 3.3616 -1.6484 3.2960 8 6 5.4189 -1.3211 2.8304 9 7 6.2761 -0.8526 1.9498 10 14 6.0348 -2.0659 4.4289 11 1 4.8777 -2.5173 5.2428 12 1 6.9122 -3.2258 4.1288 13 1 6.8042 -1.0461 5.1861 14 7 2.0197 -0.6924 -1.1995 15 6 1.7715 0.1065 -2.4064 16 6 2.4212 -0.5747 -3.6131 17 6 1.8333 -1.9789 -3.7781 18 1 0.7638 -1.9052 -3.9753 19 6 2.5212 -2.6871 -4.9469 20 6 2.0625 -2.7742 -2.4898 21 1 1.6086 -3.7606 -2.5855 22 7 3.5050 -2.9181 -2.2523 23 6 1.4232 -2.0293 -1.3157 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 1.6381 -0.2360 2.1385 28 1 1.7167 -1.7618 1.2254 29 1 3.9726 -1.2253 0.4415 30 1 3.8942 0.3752 1.2166 31 1 7.2281 -0.8930 2.1310 32 1 0.6974 0.1908 -2.5716 33 1 2.1983 1.1012 -2.2777 34 1 2.2236 0.0104 -4.5112 35 1 3.4972 -0.6469 -3.4545 36 1 3.5902 -2.7623 -4.7478 37 1 2.1019 -3.6864 -5.0639 38 1 2.3614 -2.1169 -5.8620 39 1 3.6820 -3.4402 -1.4073 40 1 3.9607 -3.3468 -3.0440 41 1 1.5969 -2.5857 -0.3947 42 1 0.3508 -1.9349 -1.4861 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246562021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:37 Heat of formation + Delta-G solvation = -14.408650 kcal Electronic energy + Delta-G solvation = -18590.108087 eV Core-core repulsion = 15990.095117 eV Total energy + Delta-G solvation = -2600.012970 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.46204 -36.20234 -33.21716 -32.32774 -31.23802 -29.10194 -28.49082 -26.71901 -25.00327 -22.71294 -22.24807 -20.92937 -19.35247 -18.38901 -16.04739 -15.83927 -15.77408 -14.79183 -14.42801 -14.26030 -14.02923 -13.41163 -13.02936 -12.90405 -12.73562 -12.62491 -12.17855 -12.02431 -11.73700 -11.47547 -11.24114 -11.16307 -10.93794 -10.81095 -10.45938 -10.37041 -10.26308 -10.15353 -9.77074 -9.47034 -9.08278 -8.76187 -8.14836 -8.06292 -7.48724 -5.79953 -3.81060 3.39676 3.47135 3.50917 4.38278 4.59788 4.86243 4.91160 4.99630 5.11369 5.40692 5.53988 5.54817 5.55777 5.59433 5.66415 5.73667 5.76597 5.83097 5.86861 5.94988 6.07697 6.12990 6.15249 6.29334 6.31683 6.38012 6.42075 6.50536 6.76789 6.81050 6.97177 7.41801 7.57033 7.79629 7.82834 7.94050 7.95280 8.20017 8.39603 8.66884 9.29380 9.80752 11.30471 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026181 B = 0.006568 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.206525 B = 4261.899053 C = 4834.839835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.080 3.920 3 H 0.075 0.925 4 C -0.099 4.099 5 C 0.031 3.969 6 C -0.518 4.518 7 H 0.048 0.952 8 C 0.057 3.943 9 N -0.890 5.890 10 Si 0.882 3.118 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.286 1.286 14 N -0.494 5.494 15 C 0.059 3.941 16 C -0.102 4.102 17 C -0.086 4.086 18 H 0.060 0.940 19 C -0.148 4.148 20 C 0.102 3.898 21 H 0.025 0.975 22 N -0.820 5.820 23 C 0.062 3.938 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.007 0.993 31 H 0.256 0.744 32 H 0.018 0.982 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.346 0.654 40 H 0.328 0.672 41 H 0.079 0.921 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.447 -2.198 -12.052 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.029 4.029 3 H 0.093 0.907 4 C -0.137 4.137 5 C -0.006 4.006 6 C -0.556 4.556 7 H 0.066 0.934 8 C -0.143 4.143 9 N -0.530 5.530 10 Si 0.711 3.289 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.213 1.213 14 N -0.218 5.218 15 C -0.070 4.070 16 C -0.140 4.140 17 C -0.105 4.105 18 H 0.079 0.921 19 C -0.205 4.205 20 C -0.010 4.010 21 H 0.043 0.957 22 N -0.352 5.352 23 C -0.067 4.067 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.160 0.840 40 H 0.141 0.859 41 H 0.098 0.902 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.745 -1.437 -11.983 15.512 hybrid contribution -0.710 -1.319 0.778 1.688 sum -10.454 -2.756 -11.205 15.571 Atomic orbital electron populations 1.22519 0.99346 1.01394 1.01104 1.21898 0.90679 0.98576 0.91698 0.90700 1.21688 1.01083 0.97847 0.93103 1.18984 0.87753 0.96985 0.96835 1.21402 0.91486 1.38964 1.03770 0.93356 1.24976 0.97173 0.95899 0.96255 1.70006 1.01624 1.46826 1.34516 0.86698 0.78762 0.78951 0.84491 1.20021 1.21237 1.21262 1.61908 1.57704 1.01166 1.00975 1.22025 0.96819 0.97191 0.90918 1.21512 1.02616 0.93916 0.95946 1.21198 0.98906 0.96254 0.94158 0.92134 1.21833 1.01326 0.99597 0.97782 1.21316 0.89740 0.95478 0.94454 0.95706 1.58484 1.08960 1.60396 1.07374 1.22108 0.94495 0.91586 0.98485 0.92520 0.92846 0.93647 0.93668 0.93840 0.94151 0.97477 0.93434 0.96344 0.91311 0.93027 0.89535 0.91855 0.93441 0.92939 0.84016 0.85852 0.90246 0.95519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 8.44 37.16 0.31 -2.39 16 2 C 0.08 1.42 2.33 -67.72 -0.16 1.26 16 3 H 0.07 1.39 7.97 -51.93 -0.41 0.98 16 4 C -0.10 -2.11 4.53 -26.73 -0.12 -2.23 16 5 C 0.03 0.84 4.77 -27.88 -0.13 0.70 16 6 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 7 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -27.48 13.29 55.43 0.74 -26.75 16 10 Si 0.88 22.19 29.54 -169.99 -5.02 17.17 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 N -0.49 -8.43 3.90 -226.69 -0.88 -9.31 16 15 C 0.06 0.87 5.15 -3.83 -0.02 0.85 16 16 C -0.10 -1.38 5.21 -26.65 -0.14 -1.51 16 17 C -0.09 -1.05 2.61 -90.49 -0.24 -1.28 16 18 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 19 C -0.15 -1.53 8.83 37.16 0.33 -1.20 16 20 C 0.10 1.39 3.15 -67.63 -0.21 1.18 16 21 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 22 N -0.82 -12.25 8.42 -4.60 -0.04 -12.29 16 23 C 0.06 0.96 4.15 -3.83 -0.02 0.94 16 24 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 25 H 0.05 0.76 6.45 -51.93 -0.34 0.43 16 26 H 0.04 0.61 6.85 -51.93 -0.36 0.25 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.91 6.34 -51.93 -0.33 0.58 16 29 H 0.04 1.15 7.83 -51.93 -0.41 0.74 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.02 0.26 6.90 -51.93 -0.36 -0.10 16 33 H 0.07 1.04 8.01 -51.93 -0.42 0.63 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 1.37 7.72 -51.93 -0.40 0.96 16 36 H 0.06 0.68 6.54 -51.93 -0.34 0.34 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.35 5.52 9.04 -39.29 -0.36 5.17 16 40 H 0.33 4.21 6.96 -39.29 -0.27 3.94 16 41 H 0.08 1.36 6.20 -51.93 -0.32 1.04 16 42 H 0.03 0.39 6.57 -51.93 -0.34 0.05 16 LS Contribution 314.77 15.07 4.74 4.74 Total: -1.00 -30.63 314.77 -8.84 -39.47 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.57 Total: 4.41 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -0.81 Total: -17.44 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.19 Total: -48.35 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.63 -8.84 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246562021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.058 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds