Wall clock time and date at job start Thu Apr 9 2020 12:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47155 * 2 1 4 4 C 1.52994 * 109.47757 * 120.00247 * 2 1 3 5 5 C 1.53000 * 109.47540 * 182.68443 * 4 2 1 6 6 C 1.50703 * 109.47273 * 174.94851 * 5 4 2 7 7 H 1.07992 * 119.99693 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99839 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00050 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99792 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47163 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47268 * 120.00114 * 10 8 6 13 13 H 1.48507 * 109.47102 * 240.00096 * 10 8 6 14 14 N 1.46900 * 109.47246 * 240.00422 * 2 1 3 15 15 C 1.46850 * 110.99869 * 70.87031 * 14 2 1 16 16 C 1.53043 * 109.52149 * 174.16410 * 15 14 2 17 17 C 1.53115 * 109.27702 * 59.18350 * 16 15 14 18 18 H 1.09001 * 109.52650 * 62.24588 * 17 16 15 19 19 C 1.53002 * 109.52400 * 182.37838 * 17 16 15 20 20 C 1.53127 * 109.16024 * 302.34312 * 17 16 15 21 21 H 1.09001 * 109.49943 * 177.59889 * 20 17 16 22 22 N 1.46901 * 109.50017 * 297.71787 * 20 17 16 23 23 C 1.46852 * 110.99828 * 306.66744 * 14 2 1 24 24 H 1.09007 * 109.46795 * 299.99777 * 1 2 3 25 25 H 1.09000 * 109.47155 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47417 * 59.99710 * 1 2 3 27 27 H 1.09000 * 109.47007 * 302.68469 * 4 2 1 28 28 H 1.08996 * 109.47100 * 62.68287 * 4 2 1 29 29 H 1.09000 * 109.47269 * 294.94765 * 5 4 2 30 30 H 1.09004 * 109.47086 * 54.95126 * 5 4 2 31 31 H 0.96993 * 119.99525 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.46215 * 294.18151 * 15 14 2 33 33 H 1.09003 * 109.46278 * 54.15851 * 15 14 2 34 34 H 1.08997 * 109.49906 * 179.12350 * 16 15 14 35 35 H 1.09000 * 109.49965 * 299.23978 * 16 15 14 36 36 H 1.08997 * 109.47202 * 59.99477 * 19 17 16 37 37 H 1.08997 * 109.47540 * 180.02562 * 19 17 16 38 38 H 1.09006 * 109.46529 * 300.00114 * 19 17 16 39 39 H 1.00900 * 110.99598 * 180.02562 * 22 20 17 40 40 H 1.00902 * 110.99754 * 303.94650 * 22 20 17 41 41 H 1.09000 * 109.45897 * 305.85336 * 23 14 2 42 42 H 1.08999 * 109.46143 * 65.81954 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5686 -0.6630 1.2833 6 6 4.0655 -1.2634 2.5732 7 1 3.3616 -1.6484 3.2960 8 6 5.4189 -1.3211 2.8304 9 7 6.2761 -0.8526 1.9498 10 14 6.0348 -2.0659 4.4289 11 1 4.8777 -2.5173 5.2428 12 1 6.9122 -3.2258 4.1288 13 1 6.8042 -1.0461 5.1861 14 7 2.0197 -0.6924 -1.1995 15 6 1.7715 0.1065 -2.4064 16 6 2.4212 -0.5747 -3.6131 17 6 1.8333 -1.9789 -3.7781 18 1 0.7638 -1.9052 -3.9753 19 6 2.5212 -2.6871 -4.9469 20 6 2.0625 -2.7742 -2.4898 21 1 1.6086 -3.7606 -2.5855 22 7 3.5050 -2.9181 -2.2523 23 6 1.4232 -2.0293 -1.3157 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 1.6381 -0.2360 2.1385 28 1 1.7167 -1.7618 1.2254 29 1 3.9726 -1.2253 0.4415 30 1 3.8942 0.3752 1.2166 31 1 7.2281 -0.8930 2.1310 32 1 0.6974 0.1908 -2.5716 33 1 2.1983 1.1012 -2.2777 34 1 2.2236 0.0104 -4.5112 35 1 3.4972 -0.6469 -3.4545 36 1 3.5902 -2.7623 -4.7478 37 1 2.1019 -3.6864 -5.0639 38 1 2.3614 -2.1169 -5.8620 39 1 3.6820 -3.4402 -1.4073 40 1 3.9607 -3.3468 -3.0440 41 1 1.5969 -2.5857 -0.3947 42 1 0.3508 -1.9349 -1.4861 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246562021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:36 Heat of formation + Delta-G solvation = -34.938869 kcal Electronic energy + Delta-G solvation = -18590.998344 eV Core-core repulsion = 15990.095117 eV Total energy + Delta-G solvation = -2600.903227 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.67020 -37.50970 -35.22594 -33.65433 -32.72331 -30.74690 -29.66409 -27.81614 -26.96658 -23.87705 -23.63212 -22.62768 -20.79044 -19.54730 -18.30388 -17.17027 -16.88530 -16.47677 -15.98061 -15.47621 -15.27927 -14.73728 -14.51993 -14.30885 -14.00405 -13.79309 -13.69828 -13.25392 -13.13935 -13.09741 -12.78070 -12.75773 -12.35530 -12.28967 -12.16525 -11.75855 -11.52825 -11.43947 -11.21081 -11.19725 -10.97931 -10.76978 -10.43071 -9.20540 -8.75712 -8.07501 -6.17925 1.41070 1.41345 1.54209 2.46539 3.13457 3.24099 3.77144 3.84642 3.94858 4.08455 4.11036 4.34083 4.43198 4.46775 4.55895 4.56240 4.68497 4.73008 4.77548 4.87876 4.91160 4.97917 5.01982 5.04864 5.10789 5.12791 5.23503 5.32370 5.35986 5.41422 5.52581 5.65268 5.68252 5.97740 6.14682 6.38499 6.41357 6.51366 6.63065 6.80594 7.03087 7.49421 9.03315 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026181 B = 0.006568 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.206525 B = 4261.899053 C = 4834.839835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.084 3.916 3 H 0.059 0.941 4 C -0.087 4.087 5 C 0.046 3.954 6 C -0.540 4.540 7 H 0.051 0.949 8 C 0.002 3.998 9 N -0.928 5.928 10 Si 0.957 3.043 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.281 1.281 14 N -0.520 5.520 15 C 0.058 3.942 16 C -0.098 4.098 17 C -0.081 4.081 18 H 0.075 0.925 19 C -0.143 4.143 20 C 0.102 3.898 21 H 0.040 0.960 22 N -0.836 5.836 23 C 0.064 3.936 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.013 0.987 30 H -0.029 1.029 31 H 0.259 0.741 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.336 0.664 40 H 0.338 0.662 41 H 0.055 0.945 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.957 -2.943 -12.493 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.025 4.025 3 H 0.078 0.922 4 C -0.125 4.125 5 C 0.009 3.991 6 C -0.578 4.578 7 H 0.069 0.931 8 C -0.196 4.196 9 N -0.568 5.568 10 Si 0.783 3.217 11 H -0.189 1.189 12 H -0.205 1.205 13 H -0.206 1.206 14 N -0.243 5.243 15 C -0.069 4.069 16 C -0.136 4.136 17 C -0.100 4.100 18 H 0.094 0.906 19 C -0.200 4.200 20 C -0.010 4.010 21 H 0.058 0.942 22 N -0.368 5.368 23 C -0.065 4.065 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.031 0.969 30 H -0.011 1.011 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.074 0.926 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.272 -2.183 -12.438 16.928 hybrid contribution -0.205 -1.061 0.895 1.404 sum -11.478 -3.244 -11.543 16.598 Atomic orbital electron populations 1.22359 0.96253 1.02138 1.02314 1.21688 0.93026 0.97122 0.90654 0.92232 1.21485 0.97142 0.98658 0.95234 1.18741 0.91468 0.93852 0.95056 1.21814 0.92096 1.39215 1.04689 0.93057 1.25892 0.97390 0.96199 1.00098 1.70153 1.02032 1.47894 1.36768 0.85522 0.78338 0.78130 0.79741 1.18865 1.20460 1.20648 1.61819 1.58882 1.02151 1.01488 1.22061 0.97949 0.96492 0.90431 1.21465 1.00701 0.95245 0.96147 1.21183 0.99825 0.95100 0.93901 0.90648 1.21780 1.00592 1.00252 0.97403 1.21382 0.88800 0.96223 0.94589 0.94188 1.58495 1.10320 1.60605 1.07411 1.22100 0.95536 0.90591 0.98232 0.91861 0.92244 0.91895 0.93724 0.93504 0.96854 1.01091 0.93218 0.94488 0.92425 0.90850 0.92438 0.92740 0.92247 0.91687 0.85185 0.84695 0.92632 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 8.44 71.98 0.61 -4.08 16 2 C 0.08 2.97 2.33 44.91 0.10 3.08 16 3 H 0.06 2.27 7.97 -2.39 -0.02 2.25 16 4 C -0.09 -3.77 4.53 30.59 0.14 -3.63 16 5 C 0.05 2.55 4.77 29.85 0.14 2.69 16 6 C -0.54 -32.03 9.11 25.60 0.23 -31.80 16 7 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 8 C 0.00 0.10 5.46 84.65 0.46 0.56 16 9 N -0.93 -58.72 13.29 21.45 0.28 -58.44 16 10 Si 0.96 45.87 29.54 68.60 2.03 47.90 16 11 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 14 N -0.52 -17.72 3.90 -871.11 -3.39 -21.11 16 15 C 0.06 1.67 5.15 86.33 0.44 2.12 16 16 C -0.10 -2.51 5.21 30.65 0.16 -2.35 16 17 C -0.08 -1.79 2.61 -10.71 -0.03 -1.82 16 18 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 19 C -0.14 -2.61 8.83 71.98 0.64 -1.98 16 20 C 0.10 2.66 3.15 44.97 0.14 2.80 16 21 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 22 N -0.84 -25.28 8.42 -168.46 -1.42 -26.70 16 23 C 0.06 1.92 4.15 86.32 0.36 2.27 16 24 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.06 1.55 6.45 -2.39 -0.02 1.54 16 26 H 0.06 1.51 6.85 -2.39 -0.02 1.49 16 27 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.05 1.98 6.34 -2.39 -0.02 1.96 16 29 H 0.01 0.79 7.83 -2.39 -0.02 0.77 16 30 H -0.03 -1.81 8.14 -2.38 -0.02 -1.83 16 31 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.04 0.93 6.90 -2.39 -0.02 0.91 16 33 H 0.06 1.75 8.01 -2.39 -0.02 1.73 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.82 7.72 -2.39 -0.02 1.80 16 36 H 0.05 1.09 6.54 -2.39 -0.02 1.08 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.34 11.13 9.04 -89.69 -0.81 10.32 16 40 H 0.34 8.69 6.96 -89.69 -0.62 8.06 16 41 H 0.06 1.91 6.20 -2.39 -0.01 1.90 16 42 H 0.04 1.16 6.57 -2.39 -0.02 1.14 16 Total: -1.00 -66.97 314.77 0.45 -66.52 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -0.45 Total: 23.96 kcal Atomic # 6 Polarization: -35.53 SS G_CDS: 3.40 Total: -32.13 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -4.53 Total: -106.25 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -66.97 0.45 -66.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246562021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.583 kcal (2) G-P(sol) polarization free energy of solvation -66.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds