Wall clock time and date at job start Thu Apr 9 2020 12:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47250 * 2 1 4 4 C 1.53003 * 109.47250 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47086 * 186.68030 * 4 3 2 6 6 C 1.46897 * 111.00133 * 160.90117 * 5 4 3 7 7 C 1.50699 * 109.47490 * 195.80727 * 6 5 4 8 8 H 1.07999 * 119.99350 * 5.02002 * 7 6 5 9 9 C 1.37870 * 120.00376 * 185.01671 * 7 6 5 10 10 N 1.31514 * 119.99766 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00244 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46698 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47120 * 120.00027 * 11 9 7 14 14 H 1.48494 * 109.47238 * 239.99939 * 11 9 7 15 15 C 1.46907 * 110.99773 * 284.85412 * 5 4 3 16 16 H 1.09001 * 109.53405 * 210.14110 * 15 5 4 17 17 C 1.53100 * 109.48857 * 90.04903 * 15 5 4 18 18 C 1.53114 * 109.15295 * 182.40002 * 17 15 5 19 19 C 1.53041 * 109.28077 * 57.65452 * 18 17 15 20 20 N 1.46850 * 109.51813 * 300.81768 * 19 18 17 21 21 C 1.46847 * 111.19733 * 61.74678 * 20 19 18 22 22 H 1.08999 * 109.46890 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46729 * 300.00386 * 1 2 3 24 24 H 1.09003 * 109.46736 * 60.00103 * 1 2 3 25 25 H 1.08993 * 109.47401 * 239.99855 * 2 1 3 26 26 H 1.08997 * 109.47069 * 119.99566 * 2 1 3 27 27 H 1.09003 * 109.47549 * 59.99573 * 3 2 1 28 28 H 1.09003 * 109.47167 * 299.99633 * 3 2 1 29 29 H 1.08996 * 109.46883 * 66.68169 * 4 3 2 30 30 H 1.08994 * 109.46727 * 306.67467 * 4 3 2 31 31 H 1.09002 * 109.46743 * 315.80928 * 6 5 4 32 32 H 1.09006 * 109.47037 * 75.80593 * 6 5 4 33 33 H 0.97006 * 120.00004 * 179.97438 * 10 9 7 34 34 H 1.08996 * 109.52599 * 62.49584 * 17 15 5 35 35 H 1.09007 * 109.57652 * 302.33249 * 17 15 5 36 36 H 1.09002 * 109.50470 * 297.71204 * 18 17 15 37 37 H 1.09001 * 109.53692 * 177.61682 * 18 17 15 38 38 H 1.09001 * 109.46092 * 180.80674 * 19 18 17 39 39 H 1.08993 * 109.45497 * 60.83220 * 19 18 17 40 40 H 1.00900 * 110.99401 * 185.83491 * 20 19 18 41 41 H 1.08998 * 109.46156 * 58.26652 * 21 20 19 42 42 H 1.09001 * 109.46257 * 178.24822 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0597 2.8181 0.1618 6 6 5.4568 2.8299 0.6155 7 6 5.8040 4.2004 1.1373 8 1 5.0402 4.9607 1.2080 9 6 7.0965 4.4836 1.5245 10 7 8.0266 3.5579 1.4380 11 14 7.5267 6.1822 2.1719 12 1 6.3110 7.0350 2.1702 13 1 8.0476 6.0664 3.5578 14 1 8.5633 6.7952 1.3031 15 6 3.9042 3.5815 -1.0837 16 1 4.6890 4.3350 -1.1497 17 6 2.5352 4.2667 -1.0953 18 6 2.3569 5.0106 -2.4216 19 6 2.5022 4.0206 -3.5797 20 7 3.8284 3.3924 -3.5246 21 6 4.0048 2.6328 -2.2803 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6768 1.9563 -0.8900 29 1 3.9338 1.0356 -0.9428 30 1 3.9330 0.8288 0.8251 31 1 5.5870 2.0949 1.4099 32 1 6.1121 2.5823 -0.2196 33 1 8.9362 3.7572 1.7100 34 1 2.4755 4.9754 -0.2693 35 1 1.7507 3.5173 -0.9896 36 1 3.1173 5.7867 -2.5088 37 1 1.3670 5.4658 -2.4541 38 1 2.3900 4.5498 -4.5260 39 1 1.7328 3.2528 -3.4995 40 1 3.9846 2.8065 -4.3311 41 1 3.2284 1.8714 -2.2065 42 1 4.9840 2.1540 -2.2829 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246769909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:38 Heat of formation + Delta-G solvation = -26.700845 kcal Electronic energy + Delta-G solvation = -18526.429560 eV Core-core repulsion = 15925.883561 eV Total energy + Delta-G solvation = -2600.545999 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.65596 -37.34373 -35.71331 -34.44671 -32.81068 -30.67955 -30.31418 -27.68931 -24.95630 -24.37036 -24.17420 -22.15597 -21.36273 -20.20061 -18.46972 -17.85218 -16.92064 -16.52959 -15.75199 -15.43646 -15.32494 -15.13963 -14.79079 -14.25112 -14.21123 -14.04780 -13.65160 -13.54320 -13.34741 -13.03661 -12.82689 -12.63864 -12.24043 -12.23394 -12.10867 -12.05018 -11.82747 -11.53230 -11.37153 -11.23682 -11.10841 -10.95712 -10.61322 -9.40613 -8.85858 -8.19482 -6.29497 1.39108 1.39388 1.53427 2.39896 3.09886 3.12026 3.47353 3.91614 3.97342 4.05753 4.11543 4.25484 4.29562 4.36121 4.41973 4.47751 4.61631 4.66113 4.74819 4.82076 4.84343 4.95102 4.97532 5.01424 5.03004 5.15249 5.18698 5.19858 5.24098 5.32393 5.41450 5.49688 5.53020 5.62331 5.69548 6.01567 6.10143 6.44449 6.53438 6.71122 6.87728 7.40142 8.90913 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019852 B = 0.007470 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.085121 B = 3747.321655 C = 4524.005318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.104 4.104 4 C 0.042 3.958 5 N -0.536 5.536 6 C 0.210 3.790 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.001 3.999 10 N -0.936 5.936 11 Si 0.967 3.033 12 H -0.265 1.265 13 H -0.276 1.276 14 H -0.278 1.278 15 C 0.097 3.903 16 H 0.046 0.954 17 C -0.108 4.108 18 C -0.116 4.116 19 C 0.062 3.938 20 N -0.700 5.700 21 C 0.046 3.954 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.049 0.951 31 H -0.002 1.002 32 H -0.037 1.037 33 H 0.264 0.736 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.039 0.961 40 H 0.350 0.650 41 H 0.052 0.948 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.979 -3.311 -8.698 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.142 4.142 4 C -0.086 4.086 5 N -0.259 5.259 6 C 0.083 3.917 7 C -0.554 4.554 8 H 0.076 0.924 9 C -0.197 4.197 10 N -0.577 5.577 11 Si 0.792 3.208 12 H -0.189 1.189 13 H -0.202 1.202 14 H -0.204 1.204 15 C -0.012 4.012 16 H 0.064 0.936 17 C -0.146 4.146 18 C -0.155 4.155 19 C -0.067 4.067 20 N -0.333 5.333 21 C -0.085 4.085 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.016 0.984 32 H -0.019 1.019 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.057 0.943 40 H 0.169 0.831 41 H 0.070 0.930 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.774 -2.554 -8.045 17.016 hybrid contribution 1.084 -0.544 -0.123 1.219 sum -13.690 -3.099 -8.168 16.240 Atomic orbital electron populations 1.21722 0.94478 1.02119 1.01982 1.21500 0.96895 0.95704 1.01865 1.21719 0.93012 0.97318 1.02161 1.22358 0.96898 0.89781 0.99529 1.62269 1.21394 1.12873 1.29395 1.19393 0.83610 0.96135 0.92522 1.21451 0.94337 0.98060 1.41582 0.92443 1.25893 0.96189 1.01401 0.96193 1.70093 1.02564 1.35435 1.49558 0.85369 0.78252 0.79257 0.77973 1.18900 1.20190 1.20408 1.21502 0.98086 0.95185 0.86459 0.93573 1.21766 0.95923 0.99466 0.97452 1.21622 1.02211 0.97975 0.93654 1.21975 0.88399 0.96849 0.99457 1.60124 1.31633 1.37608 1.03898 1.22423 0.99463 0.95493 0.91099 0.91766 0.92830 0.92369 0.91938 0.92460 0.92316 0.91153 0.94404 0.93221 0.98391 1.01937 0.92757 0.93285 0.90288 0.92985 0.89126 0.88985 0.94261 0.83082 0.92985 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.91 71.98 0.71 -1.94 16 2 C -0.12 -2.75 5.93 30.60 0.18 -2.56 16 3 C -0.10 -2.95 4.17 30.60 0.13 -2.83 16 4 C 0.04 1.55 4.48 86.30 0.39 1.93 16 5 N -0.54 -23.81 4.28 -875.24 -3.75 -27.56 16 6 C 0.21 11.64 4.65 85.56 0.40 12.04 16 7 C -0.52 -30.50 8.34 25.60 0.21 -30.29 16 8 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 9 C 0.00 0.05 5.46 84.65 0.46 0.51 16 10 N -0.94 -58.02 13.29 21.44 0.28 -57.74 16 11 Si 0.97 45.95 29.54 68.60 2.03 47.97 16 12 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 C 0.10 3.88 2.07 44.96 0.09 3.97 16 16 H 0.05 2.27 7.05 -2.39 -0.02 2.26 16 17 C -0.11 -3.52 5.32 30.67 0.16 -3.36 16 18 C -0.12 -3.06 6.09 30.65 0.19 -2.88 16 19 C 0.06 1.43 6.55 86.33 0.57 1.99 16 20 N -0.70 -19.95 6.85 -514.00 -3.52 -23.46 16 21 C 0.05 1.55 4.49 86.33 0.39 1.94 16 22 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.07 1.87 4.65 -2.39 -0.01 1.86 16 29 H 0.04 1.33 5.26 -2.39 -0.01 1.32 16 30 H 0.05 1.92 7.66 -2.39 -0.02 1.90 16 31 H 0.00 -0.12 7.69 -2.39 -0.02 -0.14 16 32 H -0.04 -2.26 8.02 -2.38 -0.02 -2.27 16 33 H 0.26 15.31 8.31 -92.70 -0.77 14.53 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.08 2.30 4.78 -2.38 -0.01 2.29 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 39 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.35 8.17 8.90 -89.69 -0.80 7.38 16 41 H 0.05 1.58 5.18 -2.39 -0.01 1.57 16 42 H 0.04 1.63 7.90 -2.39 -0.02 1.61 16 Total: -1.00 -66.37 315.51 -0.90 -67.27 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.18 Total: 14.98 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 3.88 Total: -21.46 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -6.98 Total: -108.76 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -66.37 -0.90 -67.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246769909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.572 kcal (2) G-P(sol) polarization free energy of solvation -66.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds