Wall clock time and date at job start Thu Apr 9 2020 12:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47005 * 2 1 4 4 N 1.46898 * 109.47071 * 184.49983 * 3 2 1 5 5 C 1.46903 * 111.00159 * 199.76693 * 4 3 2 6 6 C 1.50705 * 109.46499 * 66.04637 * 5 4 3 7 7 H 1.07996 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99766 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99746 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00094 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46694 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46693 * 120.00224 * 10 8 6 13 13 H 1.48496 * 109.47520 * 240.00435 * 10 8 6 14 14 C 1.46907 * 111.00075 * 75.81620 * 4 3 2 15 15 H 1.08995 * 109.49972 * 313.30984 * 14 4 3 16 16 C 1.53121 * 109.50168 * 73.42535 * 14 4 3 17 17 C 1.53114 * 109.16172 * 177.59351 * 16 14 4 18 18 C 1.53033 * 109.28090 * 302.35139 * 17 16 14 19 19 H 1.09006 * 109.46841 * 179.19127 * 18 17 16 20 20 C 1.53004 * 109.46243 * 299.16839 * 18 17 16 21 21 N 1.46843 * 109.52571 * 59.17240 * 18 17 16 22 22 C 1.46839 * 111.20270 * 298.26254 * 21 18 17 23 23 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47248 * 300.00128 * 1 2 3 25 25 H 1.09006 * 109.46952 * 60.00482 * 1 2 3 26 26 H 1.09001 * 109.47248 * 239.99871 * 2 1 3 27 27 H 1.08999 * 109.47302 * 119.99738 * 2 1 3 28 28 H 1.09002 * 109.47314 * 64.49926 * 3 2 1 29 29 H 1.09005 * 109.47392 * 304.49638 * 3 2 1 30 30 H 1.08994 * 109.47379 * 186.04317 * 5 4 3 31 31 H 1.08993 * 109.47394 * 306.04933 * 5 4 3 32 32 H 0.97000 * 119.99599 * 179.97438 * 9 8 6 33 33 H 1.09003 * 109.52098 * 57.69407 * 16 14 4 34 34 H 1.08993 * 109.52763 * 297.50449 * 16 14 4 35 35 H 1.08996 * 109.50622 * 182.40298 * 17 16 14 36 36 H 1.09003 * 109.49844 * 62.28958 * 17 16 14 37 37 H 1.09002 * 109.46611 * 60.00229 * 20 18 17 38 38 H 1.08998 * 109.47393 * 179.97438 * 20 18 17 39 39 H 1.09000 * 109.47198 * 300.00096 * 20 18 17 40 40 H 1.00904 * 111.00199 * 174.15707 * 21 18 17 41 41 H 1.08998 * 109.46619 * 181.75575 * 22 21 18 42 42 H 1.09003 * 109.45981 * 301.72633 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4440 -0.1087 5 6 4.0655 2.7225 0.3485 6 6 3.8154 2.8808 1.8262 7 1 3.2927 2.1087 2.3712 8 6 4.2548 4.0109 2.4826 9 7 4.8917 4.9510 1.8190 10 14 3.9442 4.2075 4.3141 11 1 3.2128 3.0193 4.8224 12 1 5.2418 4.3314 5.0256 13 1 3.1317 5.4278 4.5502 14 6 3.9313 1.1433 -1.4820 15 1 3.3754 0.2834 -1.8555 16 6 3.6619 2.3555 -2.3778 17 6 4.1638 2.0561 -3.7930 18 6 5.6546 1.7147 -3.7388 19 1 6.0119 1.4869 -4.7431 20 6 6.4311 2.9089 -3.1802 21 7 5.8598 0.5485 -2.8703 22 6 5.4289 0.8284 -1.4947 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7440 1.9326 0.9276 29 1 1.6123 1.9791 -0.8470 30 1 5.1386 2.7377 0.1580 31 1 3.5892 3.5415 -0.1903 32 1 5.2005 5.7462 2.2807 33 1 4.1866 3.2250 -1.9817 34 1 2.5911 2.5569 -2.4061 35 1 4.0136 2.9311 -4.4252 36 1 3.6116 1.2107 -4.2036 37 1 6.0737 3.1370 -2.1760 38 1 7.4929 2.6658 -3.1410 39 1 6.2797 3.7745 -3.8251 40 1 6.8219 0.2453 -2.8932 41 1 5.6221 -0.0430 -0.8691 42 1 5.9830 1.6835 -1.1074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246800322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:52 Heat of formation + Delta-G solvation = -30.258666 kcal Electronic energy + Delta-G solvation = -18700.663953 eV Core-core repulsion = 16099.963675 eV Total energy + Delta-G solvation = -2600.700278 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.80531 -37.89484 -34.96181 -34.01450 -32.71544 -31.42308 -28.91431 -28.07182 -26.01469 -24.62461 -24.13316 -22.51095 -21.21687 -19.38187 -18.50606 -17.66287 -16.72370 -16.34384 -16.09137 -15.72891 -15.20309 -14.95945 -14.65634 -14.37046 -14.10147 -14.01630 -13.72794 -13.55383 -13.24849 -12.93555 -12.77070 -12.70187 -12.50287 -12.42610 -12.13721 -11.97788 -11.69971 -11.56947 -11.49983 -11.33881 -11.11534 -11.03857 -10.59886 -9.35807 -8.85802 -8.20154 -6.29048 1.37962 1.38802 1.52224 2.39030 3.07389 3.12642 3.54625 3.84299 3.91777 4.05375 4.16985 4.21046 4.35545 4.40646 4.49993 4.55937 4.57006 4.65575 4.73633 4.76409 4.83988 4.94620 5.00926 5.03513 5.06291 5.08460 5.19095 5.22335 5.25024 5.31119 5.33913 5.44097 5.51712 5.56731 5.67419 6.05170 6.11966 6.41601 6.56513 6.74022 6.89107 7.40184 8.90317 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.008605 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.341576 B = 3253.074092 C = 4373.752854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C 0.063 3.937 4 N -0.540 5.540 5 C 0.217 3.783 6 C -0.522 4.522 7 H 0.059 0.941 8 C 0.002 3.998 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.264 1.264 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.094 3.906 15 H 0.086 0.914 16 C -0.151 4.151 17 C -0.100 4.100 18 C 0.085 3.915 19 H 0.107 0.893 20 C -0.187 4.187 21 N -0.675 5.675 22 C 0.072 3.928 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.021 0.979 30 H 0.004 0.996 31 H -0.038 1.038 32 H 0.262 0.738 33 H 0.040 0.960 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.351 0.649 41 H 0.072 0.928 42 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.134 -8.076 -10.247 13.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C -0.065 4.065 4 N -0.263 5.263 5 C 0.091 3.909 6 C -0.560 4.560 7 H 0.078 0.922 8 C -0.196 4.196 9 N -0.574 5.574 10 Si 0.789 3.211 11 H -0.188 1.188 12 H -0.205 1.205 13 H -0.205 1.205 14 C -0.016 4.016 15 H 0.104 0.896 16 C -0.190 4.190 17 C -0.138 4.138 18 C -0.024 4.024 19 H 0.125 0.875 20 C -0.246 4.246 21 N -0.307 5.307 22 C -0.058 4.058 23 H 0.090 0.910 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.022 0.978 31 H -0.021 1.021 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.170 0.830 41 H 0.090 0.910 42 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -2.463 -8.597 -10.077 13.473 hybrid contribution 0.550 2.056 0.988 2.346 sum -1.913 -6.541 -9.089 11.361 Atomic orbital electron populations 1.21697 0.94416 1.02344 1.01654 1.21439 0.96142 0.95170 1.01845 1.22036 0.87371 0.97427 0.99685 1.62149 1.09416 1.34092 1.20643 1.19273 0.93146 0.84549 0.93954 1.21563 1.36051 1.03584 0.94813 0.92243 1.25863 0.95024 0.95492 1.03191 1.70097 1.40015 1.09402 1.37844 0.85411 0.77986 0.78183 0.79525 1.18809 1.20466 1.20464 1.21632 0.95812 0.96808 0.87303 0.89588 1.22216 1.00073 0.99184 0.97542 1.21513 0.95445 1.01778 0.95083 1.21616 0.95210 0.88205 0.97407 0.87482 1.22549 1.00504 1.00470 1.01073 1.60450 1.27449 1.34464 1.08311 1.21732 0.94901 0.99380 0.89773 0.91000 0.93208 0.92631 0.91846 0.92529 0.92675 0.96062 0.97828 1.02051 0.92885 0.94096 0.93138 0.90820 0.90438 0.95024 0.92096 0.91547 0.83018 0.90991 0.96688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.91 71.98 0.71 -2.90 16 2 C -0.11 -3.38 6.10 30.59 0.19 -3.20 16 3 C 0.06 2.50 4.71 86.30 0.41 2.90 16 4 N -0.54 -23.67 4.35 -875.20 -3.81 -27.48 16 5 C 0.22 11.65 3.55 85.56 0.30 11.95 16 6 C -0.52 -30.06 8.23 25.60 0.21 -29.85 16 7 H 0.06 3.40 7.31 -2.91 -0.02 3.38 16 8 C 0.00 0.12 5.46 84.66 0.46 0.58 16 9 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 10 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 11 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 C 0.09 3.44 2.24 44.97 0.10 3.54 16 15 H 0.09 2.96 6.53 -2.39 -0.02 2.94 16 16 C -0.15 -5.37 4.23 30.67 0.13 -5.24 16 17 C -0.10 -2.70 5.61 30.64 0.17 -2.53 16 18 C 0.09 2.17 3.68 44.94 0.17 2.33 16 19 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 20 C -0.19 -5.38 8.59 71.98 0.62 -4.76 16 21 N -0.68 -18.32 6.65 -491.70 -3.27 -21.59 16 22 C 0.07 2.51 5.56 86.33 0.48 2.99 16 23 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.06 1.87 6.66 -2.39 -0.02 1.85 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 2.48 6.58 -2.39 -0.02 2.46 16 29 H 0.02 0.83 6.43 -2.38 -0.02 0.81 16 30 H 0.00 0.22 6.24 -2.39 -0.01 0.20 16 31 H -0.04 -2.24 6.78 -2.39 -0.02 -2.26 16 32 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 33 H 0.04 1.74 4.82 -2.39 -0.01 1.73 16 34 H 0.05 1.81 6.71 -2.39 -0.02 1.79 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.03 1.18 4.80 -2.39 -0.01 1.16 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.35 8.08 8.90 -89.69 -0.80 7.28 16 41 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.01 0.62 4.50 -2.39 -0.01 0.61 16 Total: -1.00 -63.52 309.01 -0.62 -64.15 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.19 Total: 18.48 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 3.95 Total: -24.18 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -6.79 Total: -105.53 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -63.52 -0.62 -64.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246800322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.888 kcal (2) G-P(sol) polarization free energy of solvation -63.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds