Wall clock time and date at job start Thu Apr 9 2020 12:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46916 * 2 1 4 4 N 1.46902 * 109.47007 * 180.02562 * 3 2 1 5 5 C 1.46894 * 110.99704 * 193.95303 * 4 3 2 6 6 C 1.50705 * 109.47415 * 66.04549 * 5 4 3 7 7 H 1.07995 * 119.99344 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00224 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00431 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 120.00066 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47075 * 90.00055 * 10 8 6 12 12 H 1.48506 * 109.46933 * 210.00140 * 10 8 6 13 13 H 1.48501 * 109.47099 * 329.99969 * 10 8 6 14 14 C 1.46901 * 110.99812 * 70.00054 * 4 3 2 15 15 H 1.09002 * 109.50072 * 309.91602 * 14 4 3 16 16 C 1.53123 * 109.49989 * 189.80092 * 14 4 3 17 17 C 1.53115 * 109.16049 * 182.40375 * 16 14 4 18 18 C 1.53036 * 109.27765 * 57.65618 * 17 16 14 19 19 H 1.09001 * 109.45124 * 180.81310 * 18 17 16 20 20 C 1.52997 * 109.46207 * 60.83760 * 18 17 16 21 21 N 1.46845 * 109.52166 * 300.81612 * 18 17 16 22 22 C 1.46850 * 111.19475 * 61.74596 * 21 18 17 23 23 H 1.09000 * 109.47062 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47499 * 299.99933 * 1 2 3 25 25 H 1.09006 * 109.47398 * 60.00548 * 1 2 3 26 26 H 1.09005 * 109.47013 * 240.00013 * 2 1 3 27 27 H 1.08990 * 109.47194 * 119.99817 * 2 1 3 28 28 H 1.08994 * 109.46982 * 59.99750 * 3 2 1 29 29 H 1.09006 * 109.46639 * 299.99916 * 3 2 1 30 30 H 1.09001 * 109.47197 * 186.04765 * 5 4 3 31 31 H 1.09007 * 109.47289 * 306.04399 * 5 4 3 32 32 H 0.96996 * 120.00722 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.52225 * 302.31287 * 16 14 4 34 34 H 1.09008 * 109.52379 * 62.43766 * 16 14 4 35 35 H 1.09001 * 109.50470 * 297.71215 * 17 16 14 36 36 H 1.09006 * 109.50152 * 177.60064 * 17 16 14 37 37 H 1.09002 * 109.47153 * 299.94444 * 20 18 17 38 38 H 1.09001 * 109.46832 * 179.97438 * 20 18 17 39 39 H 1.09004 * 109.47261 * 59.94617 * 20 18 17 40 40 H 1.00903 * 110.99572 * 185.83662 * 21 18 17 41 41 H 1.09000 * 109.46491 * 58.27037 * 22 21 18 42 42 H 1.08997 * 109.45965 * 178.24455 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0354 2.7735 0.3300 6 6 3.6775 3.1160 1.7533 7 1 3.1148 2.4152 2.3521 8 6 4.0684 4.3239 2.2909 9 7 3.7565 4.6226 3.5331 10 14 5.0411 5.5363 1.2549 11 1 4.1042 6.4400 0.5403 12 1 5.9286 6.3386 2.1346 13 1 5.8638 4.7941 0.2662 14 6 4.0348 0.9737 -1.2897 15 1 3.5496 0.0362 -1.5613 16 6 5.5459 0.7539 -1.1758 17 6 6.0953 0.3234 -2.5386 18 6 5.7576 1.3926 -3.5801 19 1 6.1348 1.0821 -4.5545 20 6 6.4089 2.7179 -3.1799 21 7 4.3010 1.5651 -3.6518 22 6 3.7569 2.0240 -2.3674 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9563 -0.8901 30 1 5.1197 2.7734 0.2180 31 1 3.6008 3.5135 -0.3421 32 1 4.0311 5.4725 3.9112 33 1 6.0266 1.6818 -0.8658 34 1 5.7464 -0.0240 -0.4389 35 1 5.6431 -0.6245 -2.8303 36 1 7.1772 0.2066 -2.4744 37 1 6.0314 3.0286 -2.2057 38 1 6.1688 3.4794 -3.9219 39 1 7.4901 2.5900 -3.1266 40 1 4.0479 2.1957 -4.3978 41 1 4.2302 2.9652 -2.0879 42 1 2.6811 2.1723 -2.4610 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246800323.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:54 Heat of formation + Delta-G solvation = -5.555992 kcal Electronic energy + Delta-G solvation = -18807.057714 eV Core-core repulsion = 16207.428624 eV Total energy + Delta-G solvation = -2599.629089 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.56541 -36.51888 -33.13120 -32.40995 -31.62031 -30.14479 -27.66990 -26.72602 -24.51995 -23.27926 -22.40502 -21.06046 -19.77977 -17.88480 -17.10321 -16.44032 -14.97414 -14.77152 -14.72741 -14.30567 -13.90954 -13.64280 -13.43733 -12.95373 -12.62378 -12.56391 -12.53818 -12.31044 -12.00939 -11.70486 -11.34422 -11.20233 -11.02713 -10.82508 -10.70340 -10.44278 -10.22506 -10.13745 -10.06087 -9.79562 -9.58154 -9.19765 -8.57558 -8.29534 -7.27477 -6.05711 -4.01923 3.24728 3.33015 3.33492 4.29359 4.40093 4.73964 5.01965 5.10655 5.23202 5.26329 5.32355 5.47067 5.49668 5.55391 5.64173 5.74694 5.76232 5.84755 5.92993 6.00269 6.06246 6.10079 6.15893 6.22329 6.31472 6.33239 6.34588 6.48930 6.63131 6.70564 6.75667 6.81384 6.96290 7.02805 7.16571 7.49158 7.64332 7.97293 8.13501 8.68016 9.04188 9.56633 11.07602 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.010515 C = 0.007078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.236156 B = 2662.185201 C = 3955.088675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.059 3.941 4 N -0.519 5.519 5 C 0.160 3.840 6 C -0.506 4.506 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.900 5.900 10 Si 0.872 3.128 11 H -0.279 1.279 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.088 3.912 15 H 0.080 0.920 16 C -0.116 4.116 17 C -0.109 4.109 18 C 0.083 3.917 19 H 0.076 0.924 20 C -0.193 4.193 21 N -0.680 5.680 22 C 0.019 3.981 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.020 0.980 30 H 0.030 0.970 31 H -0.018 1.018 32 H 0.263 0.737 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.059 0.941 40 H 0.334 0.666 41 H 0.041 0.959 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 -6.673 -13.554 15.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.069 4.069 4 N -0.241 5.241 5 C 0.033 3.967 6 C -0.545 4.545 7 H 0.099 0.901 8 C -0.133 4.133 9 N -0.539 5.539 10 Si 0.699 3.301 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.193 1.193 14 C -0.021 4.021 15 H 0.098 0.902 16 C -0.153 4.153 17 C -0.147 4.147 18 C -0.027 4.027 19 H 0.094 0.906 20 C -0.252 4.252 21 N -0.310 5.310 22 C -0.111 4.111 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.000 1.000 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.151 0.849 41 H 0.059 0.941 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.210 -7.518 -12.894 14.975 hybrid contribution 0.570 2.456 -1.088 2.746 sum 1.780 -5.062 -13.983 14.977 Atomic orbital electron populations 1.21723 0.96510 1.00815 1.01583 1.21534 0.94556 0.97749 1.01844 1.22089 0.88132 0.95561 1.01126 1.62202 1.06934 1.28755 1.26248 1.20211 0.95289 0.84463 0.96692 1.21074 1.35264 1.02530 0.95612 0.90078 1.24884 0.95796 0.97802 0.94789 1.69886 1.47006 1.23456 1.13600 0.86922 0.80702 0.81779 0.80676 1.20447 1.21143 1.19337 1.21697 0.95362 0.97311 0.87757 0.90204 1.21677 0.95305 1.02253 0.96107 1.21574 0.99965 0.98275 0.94907 1.21532 0.87602 0.94587 0.98942 0.90577 1.22615 1.01498 0.98471 1.02597 1.60517 1.10799 1.53560 1.06155 1.22747 0.99475 0.98624 0.90300 0.93300 0.92620 0.93354 0.92815 0.91481 0.89311 0.96205 0.95204 1.00031 0.92716 0.91509 0.91226 0.91463 0.91867 0.91394 0.93255 0.92236 0.84864 0.94076 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.90 5.96 -26.73 -0.16 -2.06 16 3 C 0.06 1.13 4.71 -3.82 -0.02 1.11 16 4 N -0.52 -10.68 4.42 -227.98 -1.01 -11.69 16 5 C 0.16 3.81 2.74 -4.98 -0.01 3.80 16 6 C -0.51 -14.28 8.87 -34.44 -0.31 -14.59 16 7 H 0.08 2.49 7.47 -52.49 -0.39 2.10 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 10 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 14 C 0.09 1.53 2.25 -67.63 -0.15 1.38 16 15 H 0.08 1.35 6.29 -51.93 -0.33 1.03 16 16 C -0.12 -1.89 4.97 -26.61 -0.13 -2.02 16 17 C -0.11 -1.43 5.61 -26.65 -0.15 -1.58 16 18 C 0.08 1.06 3.68 -67.73 -0.25 0.81 16 19 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 20 C -0.19 -2.57 8.59 37.16 0.32 -2.25 16 21 N -0.68 -9.26 6.65 -106.77 -0.71 -9.97 16 22 C 0.02 0.31 4.83 -3.84 -0.02 0.29 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.82 6.52 -51.93 -0.34 0.48 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.09 1.94 6.60 -51.93 -0.34 1.60 16 29 H 0.02 0.37 6.31 -51.93 -0.33 0.04 16 30 H 0.03 0.73 5.10 -51.93 -0.26 0.47 16 31 H -0.02 -0.43 6.24 -51.92 -0.32 -0.76 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 33 H 0.07 1.21 4.69 -51.93 -0.24 0.97 16 34 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.11 4.80 -51.93 -0.25 0.86 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.33 3.99 8.90 -39.29 -0.35 3.64 16 41 H 0.04 0.75 4.55 -51.93 -0.24 0.51 16 42 H 0.07 1.14 6.55 -51.93 -0.34 0.80 16 LS Contribution 304.57 15.07 4.59 4.59 Total: -1.00 -29.35 304.57 -8.76 -38.11 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.13 Total: 3.73 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -0.61 Total: -14.88 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.94 Total: -48.43 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.35 -8.76 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246800323.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.554 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds