Wall clock time and date at job start Thu Apr 9 2020 12:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46916 * 2 1 4 4 N 1.46902 * 109.47007 * 180.02562 * 3 2 1 5 5 C 1.46894 * 110.99704 * 193.95303 * 4 3 2 6 6 C 1.50705 * 109.47415 * 66.04549 * 5 4 3 7 7 H 1.07995 * 119.99344 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00224 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00431 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 120.00066 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47075 * 90.00055 * 10 8 6 12 12 H 1.48506 * 109.46933 * 210.00140 * 10 8 6 13 13 H 1.48501 * 109.47099 * 329.99969 * 10 8 6 14 14 C 1.46901 * 110.99812 * 70.00054 * 4 3 2 15 15 H 1.09002 * 109.50072 * 309.91602 * 14 4 3 16 16 C 1.53123 * 109.49989 * 189.80092 * 14 4 3 17 17 C 1.53115 * 109.16049 * 182.40375 * 16 14 4 18 18 C 1.53036 * 109.27765 * 57.65618 * 17 16 14 19 19 H 1.09001 * 109.45124 * 180.81310 * 18 17 16 20 20 C 1.52997 * 109.46207 * 60.83760 * 18 17 16 21 21 N 1.46845 * 109.52166 * 300.81612 * 18 17 16 22 22 C 1.46850 * 111.19475 * 61.74596 * 21 18 17 23 23 H 1.09000 * 109.47062 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47499 * 299.99933 * 1 2 3 25 25 H 1.09006 * 109.47398 * 60.00548 * 1 2 3 26 26 H 1.09005 * 109.47013 * 240.00013 * 2 1 3 27 27 H 1.08990 * 109.47194 * 119.99817 * 2 1 3 28 28 H 1.08994 * 109.46982 * 59.99750 * 3 2 1 29 29 H 1.09006 * 109.46639 * 299.99916 * 3 2 1 30 30 H 1.09001 * 109.47197 * 186.04765 * 5 4 3 31 31 H 1.09007 * 109.47289 * 306.04399 * 5 4 3 32 32 H 0.96996 * 120.00722 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.52225 * 302.31287 * 16 14 4 34 34 H 1.09008 * 109.52379 * 62.43766 * 16 14 4 35 35 H 1.09001 * 109.50470 * 297.71215 * 17 16 14 36 36 H 1.09006 * 109.50152 * 177.60064 * 17 16 14 37 37 H 1.09002 * 109.47153 * 299.94444 * 20 18 17 38 38 H 1.09001 * 109.46832 * 179.97438 * 20 18 17 39 39 H 1.09004 * 109.47261 * 59.94617 * 20 18 17 40 40 H 1.00903 * 110.99572 * 185.83662 * 21 18 17 41 41 H 1.09000 * 109.46491 * 58.27037 * 22 21 18 42 42 H 1.08997 * 109.45965 * 178.24455 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0354 2.7735 0.3300 6 6 3.6775 3.1160 1.7533 7 1 3.1148 2.4152 2.3521 8 6 4.0684 4.3239 2.2909 9 7 3.7565 4.6226 3.5331 10 14 5.0411 5.5363 1.2549 11 1 4.1042 6.4400 0.5403 12 1 5.9286 6.3386 2.1346 13 1 5.8638 4.7941 0.2662 14 6 4.0348 0.9737 -1.2897 15 1 3.5496 0.0362 -1.5613 16 6 5.5459 0.7539 -1.1758 17 6 6.0953 0.3234 -2.5386 18 6 5.7576 1.3926 -3.5801 19 1 6.1348 1.0821 -4.5545 20 6 6.4089 2.7179 -3.1799 21 7 4.3010 1.5651 -3.6518 22 6 3.7569 2.0240 -2.3674 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9563 -0.8901 30 1 5.1197 2.7734 0.2180 31 1 3.6008 3.5135 -0.3421 32 1 4.0311 5.4725 3.9112 33 1 6.0266 1.6818 -0.8658 34 1 5.7464 -0.0240 -0.4389 35 1 5.6431 -0.6245 -2.8303 36 1 7.1772 0.2066 -2.4744 37 1 6.0314 3.0286 -2.2057 38 1 6.1688 3.4794 -3.9219 39 1 7.4901 2.5900 -3.1266 40 1 4.0479 2.1957 -4.3978 41 1 4.2302 2.9652 -2.0879 42 1 2.6811 2.1723 -2.4610 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246800323.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:53 Heat of formation + Delta-G solvation = -26.624697 kcal Electronic energy + Delta-G solvation = -18807.971321 eV Core-core repulsion = 16207.428624 eV Total energy + Delta-G solvation = -2600.542697 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88378 -37.92593 -34.94158 -34.08793 -32.79431 -31.62995 -29.42721 -27.89854 -26.06304 -24.54575 -24.01231 -22.54656 -21.12586 -19.37120 -18.99386 -17.74199 -16.66955 -16.22588 -16.07259 -15.83699 -15.39394 -15.16715 -14.66056 -14.52446 -14.12000 -14.00848 -13.82211 -13.72485 -13.38159 -12.97217 -12.82225 -12.70335 -12.52564 -12.37576 -12.11312 -11.86017 -11.76485 -11.66390 -11.48765 -11.30960 -11.17161 -10.99123 -10.79418 -9.44595 -8.89939 -8.30773 -6.32371 1.27077 1.29037 1.39306 2.29339 3.00189 3.09492 3.39374 3.86547 3.94204 4.00657 4.13757 4.19263 4.26260 4.36348 4.48248 4.52693 4.57446 4.61632 4.64838 4.75392 4.78488 4.83150 4.94352 4.95525 5.02844 5.07219 5.14144 5.15563 5.22930 5.23747 5.37598 5.42638 5.49344 5.50141 5.58973 5.96923 6.05595 6.45084 6.49715 6.70590 6.75285 7.30557 8.86086 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.010515 C = 0.007078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.236156 B = 2662.185201 C = 3955.088675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C 0.062 3.938 4 N -0.535 5.535 5 C 0.178 3.822 6 C -0.512 4.512 7 H 0.038 0.962 8 C 0.010 3.990 9 N -0.947 5.947 10 Si 0.940 3.060 11 H -0.269 1.269 12 H -0.279 1.279 13 H -0.253 1.253 14 C 0.090 3.910 15 H 0.089 0.911 16 C -0.115 4.115 17 C -0.103 4.103 18 C 0.083 3.917 19 H 0.106 0.894 20 C -0.190 4.190 21 N -0.674 5.674 22 C 0.029 3.971 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.028 0.972 30 H 0.027 0.973 31 H -0.020 1.020 32 H 0.266 0.734 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.347 0.653 41 H 0.020 0.980 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.018 -7.272 -16.671 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C -0.066 4.066 4 N -0.257 5.257 5 C 0.051 3.949 6 C -0.551 4.551 7 H 0.056 0.944 8 C -0.187 4.187 9 N -0.588 5.588 10 Si 0.764 3.236 11 H -0.194 1.194 12 H -0.205 1.205 13 H -0.177 1.177 14 C -0.019 4.019 15 H 0.107 0.893 16 C -0.153 4.153 17 C -0.141 4.141 18 C -0.026 4.026 19 H 0.124 0.876 20 C -0.249 4.249 21 N -0.305 5.305 22 C -0.102 4.102 23 H 0.090 0.910 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.045 0.955 31 H -0.002 1.002 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.166 0.834 41 H 0.039 0.961 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.053 -8.136 -16.039 18.101 hybrid contribution 0.265 2.561 -0.077 2.576 sum 2.318 -5.575 -16.116 17.210 Atomic orbital electron populations 1.21690 0.94494 1.02363 1.01600 1.21451 0.96252 0.95179 1.01837 1.22046 0.87442 0.97589 0.99528 1.62132 1.07816 1.26713 1.29082 1.19856 0.95003 0.86264 0.93759 1.21311 1.34426 1.01875 0.97465 0.94354 1.25770 0.97005 0.99924 0.96005 1.70039 1.48701 1.24360 1.15655 0.85824 0.79409 0.79188 0.79200 1.19417 1.20488 1.17697 1.21755 0.96019 0.97746 0.86396 0.89252 1.21668 0.94476 1.00992 0.98206 1.21567 1.01049 0.98698 0.92777 1.21652 0.86825 0.94037 1.00134 0.87637 1.22585 1.02247 0.99099 1.00981 1.60490 1.11545 1.53532 1.04976 1.22509 0.99187 0.97163 0.91352 0.90961 0.93674 0.92310 0.91300 0.92843 0.93205 0.95375 0.95472 1.00214 0.92479 0.93660 0.92017 0.90538 0.90030 0.94720 0.92245 0.90991 0.83409 0.96137 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.91 71.98 0.71 -3.02 16 2 C -0.11 -3.43 5.96 30.59 0.18 -3.25 16 3 C 0.06 2.41 4.71 86.30 0.41 2.82 16 4 N -0.53 -22.36 4.42 -875.20 -3.87 -26.23 16 5 C 0.18 8.67 2.74 85.56 0.23 8.91 16 6 C -0.51 -30.16 8.87 25.60 0.23 -29.93 16 7 H 0.04 2.52 7.47 -2.91 -0.02 2.50 16 8 C 0.01 0.60 5.47 84.65 0.46 1.07 16 9 N -0.95 -59.95 13.96 21.44 0.30 -59.65 16 10 Si 0.94 44.98 27.47 68.60 1.88 46.87 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 13 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 14 C 0.09 3.01 2.25 44.97 0.10 3.11 16 15 H 0.09 2.85 6.29 -2.39 -0.02 2.83 16 16 C -0.12 -3.63 4.97 30.67 0.15 -3.48 16 17 C -0.10 -2.38 5.61 30.64 0.17 -2.21 16 18 C 0.08 1.81 3.68 44.94 0.17 1.98 16 19 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 20 C -0.19 -4.55 8.59 71.98 0.62 -3.93 16 21 N -0.67 -16.25 6.65 -491.70 -3.27 -19.52 16 22 C 0.03 0.90 4.83 86.32 0.42 1.32 16 23 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 24 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.07 1.96 6.52 -2.38 -0.02 1.94 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 2.31 6.60 -2.39 -0.02 2.29 16 29 H 0.03 1.04 6.31 -2.38 -0.02 1.02 16 30 H 0.03 1.35 5.10 -2.39 -0.01 1.34 16 31 H -0.02 -0.96 6.24 -2.38 -0.01 -0.98 16 32 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 33 H 0.04 1.62 4.69 -2.39 -0.01 1.61 16 34 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.03 1.07 4.80 -2.39 -0.01 1.06 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.35 7.10 8.90 -89.69 -0.80 6.30 16 41 H 0.02 0.73 4.55 -2.39 -0.01 0.72 16 42 H 0.07 2.05 6.55 -2.39 -0.02 2.04 16 Total: -1.00 -65.64 304.57 -0.96 -66.60 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.14 Total: 18.56 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 3.85 Total: -26.62 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -6.84 Total: -105.40 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.87 kcal Total: -65.64 -0.96 -66.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246800323.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.972 kcal (2) G-P(sol) polarization free energy of solvation -65.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds