Wall clock time and date at job start Thu Apr 9 2020 12:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47334 * 2 1 4 4 N 1.46892 * 109.47270 * 185.41832 * 3 2 1 5 5 C 1.46900 * 110.99888 * 160.14250 * 4 3 2 6 6 C 1.50698 * 109.47306 * 288.62597 * 5 4 3 7 7 H 1.08003 * 119.99851 * 355.29309 * 6 5 4 8 8 C 1.37881 * 120.00024 * 175.28955 * 6 5 4 9 9 N 1.31514 * 120.00298 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99764 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47009 * 60.00577 * 10 8 6 12 12 H 1.48492 * 109.46945 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47497 * 300.00218 * 10 8 6 14 14 C 1.46899 * 111.00198 * 284.09348 * 4 3 2 15 15 H 1.08999 * 109.50008 * 54.92410 * 14 4 3 16 16 C 1.53123 * 109.50397 * 174.99954 * 14 4 3 17 17 C 1.53122 * 109.15578 * 177.63534 * 16 14 4 18 18 C 1.53033 * 109.28376 * 302.34768 * 17 16 14 19 19 H 1.09007 * 109.45192 * 299.17080 * 18 17 16 20 20 C 1.52995 * 109.46354 * 179.20061 * 18 17 16 21 21 N 1.46842 * 109.52365 * 59.17782 * 18 17 16 22 22 C 1.46847 * 111.20385 * 298.26207 * 21 18 17 23 23 H 1.09004 * 109.46758 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46899 * 299.99660 * 1 2 3 25 25 H 1.09000 * 109.47447 * 59.99986 * 1 2 3 26 26 H 1.09009 * 109.47308 * 239.99922 * 2 1 3 27 27 H 1.09000 * 109.47447 * 120.00014 * 2 1 3 28 28 H 1.09000 * 109.46703 * 65.41784 * 3 2 1 29 29 H 1.09005 * 109.46616 * 305.41958 * 3 2 1 30 30 H 1.08997 * 109.47248 * 48.63073 * 5 4 3 31 31 H 1.09005 * 109.47233 * 168.62760 * 5 4 3 32 32 H 0.96994 * 120.00299 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.52009 * 57.73602 * 16 14 4 34 34 H 1.08992 * 109.52281 * 297.54383 * 16 14 4 35 35 H 1.09004 * 109.50017 * 182.40341 * 17 16 14 36 36 H 1.09002 * 109.53529 * 62.31540 * 17 16 14 37 37 H 1.09006 * 109.46917 * 299.94060 * 20 18 17 38 38 H 1.08995 * 109.47372 * 59.94845 * 20 18 17 39 39 H 1.09007 * 109.47067 * 179.97438 * 20 18 17 40 40 H 1.00902 * 110.99751 * 62.35883 * 21 18 17 41 41 H 1.08993 * 109.46816 * 181.75186 * 22 21 18 42 42 H 1.09006 * 109.46195 * 301.72653 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5031 1.4445 -0.1308 5 6 3.9878 2.7492 -0.6008 6 6 3.6135 2.9321 -2.0491 7 1 3.1376 2.1273 -2.5896 8 6 3.8785 4.1270 -2.6840 9 7 4.4584 5.1069 -2.0259 10 14 3.4152 4.3535 -4.4794 11 1 1.9487 4.1806 -4.6378 12 1 3.8042 5.7162 -4.9229 13 1 4.1247 3.3434 -5.3050 14 6 4.1455 1.0696 1.1360 15 1 3.7543 0.1093 1.4721 16 6 5.6588 0.9612 0.9294 17 6 6.3259 0.6282 2.2668 18 6 5.9723 1.7090 3.2909 19 1 6.3415 2.6738 2.9427 20 6 6.6206 1.3699 4.6346 21 7 4.5143 1.7729 3.4533 22 6 3.8549 2.1377 2.1929 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7581 1.9275 0.9345 29 1 1.5996 1.9835 -0.8375 30 1 3.5340 3.5414 -0.0054 31 1 5.0721 2.7927 -0.4975 32 1 4.6445 5.9476 -2.4724 33 1 6.0444 1.9100 0.5563 34 1 5.8724 0.1715 0.2092 35 1 7.4073 0.5918 2.1349 36 1 5.9698 -0.3392 2.6210 37 1 6.2511 0.4054 4.9831 38 1 7.7029 1.3225 4.5141 39 1 6.3692 2.1399 5.3640 40 1 4.1520 0.9023 3.8121 41 1 2.7790 2.2073 2.3526 42 1 4.2341 3.1004 1.8500 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246800324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:55 Heat of formation + Delta-G solvation = -34.352270 kcal Electronic energy + Delta-G solvation = -18466.623372 eV Core-core repulsion = 15865.745582 eV Total energy + Delta-G solvation = -2600.877790 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.76312 -37.82718 -34.97739 -34.13831 -32.61896 -31.88657 -29.15218 -27.39560 -25.97139 -24.62832 -23.70043 -22.42088 -21.59854 -20.34206 -18.59688 -16.99755 -16.74474 -16.12814 -16.05160 -15.92382 -15.52585 -15.13075 -14.80141 -14.27582 -13.97264 -13.80897 -13.61701 -13.45666 -13.06108 -12.88559 -12.79345 -12.57093 -12.53100 -12.25612 -12.14547 -12.07543 -11.89483 -11.81461 -11.55568 -11.54446 -11.19962 -11.00919 -10.57218 -9.75946 -8.62746 -8.18124 -6.28948 1.38709 1.41629 1.49597 2.39364 3.11623 3.12975 3.44313 3.72912 3.92404 4.05392 4.11061 4.17956 4.33363 4.36494 4.40671 4.49555 4.57375 4.68174 4.71212 4.79391 4.89005 4.93973 4.97186 5.01813 5.08242 5.15297 5.20705 5.21530 5.26631 5.29458 5.37453 5.42417 5.44641 5.52316 5.67337 5.99845 6.11785 6.40411 6.54354 6.71721 6.88580 7.40412 8.90660 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.007553 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.101591 B = 3706.241185 C = 4721.724753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C 0.059 3.941 4 N -0.537 5.537 5 C 0.211 3.789 6 C -0.522 4.522 7 H 0.058 0.942 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.965 3.035 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.057 3.943 15 H 0.088 0.912 16 C -0.113 4.113 17 C -0.136 4.136 18 C 0.077 3.923 19 H 0.052 0.948 20 C -0.132 4.132 21 N -0.675 5.675 22 C 0.038 3.962 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.027 0.973 29 H 0.051 0.949 30 H -0.038 1.038 31 H 0.008 0.992 32 H 0.263 0.737 33 H 0.036 0.964 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.348 0.652 41 H 0.070 0.930 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.800 -10.910 10.397 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.069 4.069 4 N -0.260 5.260 5 C 0.085 3.915 6 C -0.561 4.561 7 H 0.076 0.924 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.790 3.210 11 H -0.193 1.193 12 H -0.208 1.208 13 H -0.194 1.194 14 C -0.053 4.053 15 H 0.106 0.894 16 C -0.151 4.151 17 C -0.175 4.175 18 C -0.033 4.033 19 H 0.070 0.930 20 C -0.190 4.190 21 N -0.306 5.306 22 C -0.093 4.093 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.070 0.930 30 H -0.020 1.020 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.167 0.833 41 H 0.089 0.911 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.606 -10.427 10.271 14.649 hybrid contribution -0.163 0.663 -1.159 1.345 sum -0.769 -9.764 9.112 13.378 Atomic orbital electron populations 1.21699 0.94504 1.02329 1.01657 1.21418 0.96160 0.95048 1.01787 1.22090 0.87922 0.97691 0.99183 1.62226 1.05668 1.31261 1.26821 1.19351 0.93995 0.84248 0.93896 1.21470 1.38929 0.98741 0.96915 0.92410 1.25874 0.95256 0.95518 1.02916 1.70080 1.43821 1.04991 1.38590 0.85503 0.78951 0.77158 0.79420 1.19298 1.20848 1.19440 1.22415 0.95160 0.98429 0.89300 0.89381 1.21634 0.94453 1.00893 0.98121 1.22224 1.01323 0.99745 0.94251 1.21629 0.87760 0.97581 0.96304 0.92975 1.21714 1.00483 1.02156 0.94650 1.60671 1.04513 1.38766 1.26620 1.22478 0.98879 0.98287 0.89686 0.90976 0.92462 0.93482 0.92592 0.91646 0.95509 0.93031 1.01984 0.97424 0.92817 0.94493 0.92016 0.90441 0.90165 0.91291 0.91039 0.92293 0.83345 0.91129 0.94294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.85 16 2 C -0.11 -3.19 5.96 30.59 0.18 -3.01 16 3 C 0.06 2.29 4.71 86.31 0.41 2.70 16 4 N -0.54 -23.16 4.37 -875.22 -3.83 -26.99 16 5 C 0.21 11.36 3.65 85.56 0.31 11.68 16 6 C -0.52 -30.23 8.27 25.60 0.21 -30.02 16 7 H 0.06 3.31 7.78 -2.91 -0.02 3.29 16 8 C 0.00 0.13 5.46 84.66 0.46 0.59 16 9 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 10 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 14 C 0.06 2.02 2.29 44.97 0.10 2.12 16 15 H 0.09 2.71 6.85 -2.39 -0.02 2.70 16 16 C -0.11 -3.91 5.19 30.68 0.16 -3.75 16 17 C -0.14 -3.46 5.36 30.65 0.16 -3.29 16 18 C 0.08 2.03 3.03 44.94 0.14 2.16 16 19 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 20 C -0.13 -2.53 9.47 71.98 0.68 -1.85 16 21 N -0.68 -18.92 6.50 -491.70 -3.20 -22.12 16 22 C 0.04 1.34 5.22 86.33 0.45 1.79 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.06 1.75 7.05 -2.39 -0.02 1.73 16 28 H 0.03 1.01 5.91 -2.39 -0.01 0.99 16 29 H 0.05 2.30 7.07 -2.38 -0.02 2.28 16 30 H -0.04 -2.23 7.10 -2.39 -0.02 -2.25 16 31 H 0.01 0.45 5.66 -2.38 -0.01 0.44 16 32 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.04 1.55 6.04 -2.39 -0.01 1.53 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 37 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.35 8.01 8.79 -89.69 -0.79 7.22 16 41 H 0.07 2.45 6.29 -2.39 -0.02 2.43 16 42 H 0.04 1.69 6.70 -2.38 -0.02 1.68 16 Total: -1.00 -64.31 316.64 -0.55 -64.86 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.19 Total: 17.78 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 3.98 Total: -23.73 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -6.74 Total: -106.13 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -64.31 -0.55 -64.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246800324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.508 kcal (2) G-P(sol) polarization free energy of solvation -64.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds