Wall clock time and date at job start Thu Apr 9 2020 12:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46988 * 2 1 4 4 N 1.46901 * 109.47098 * 181.35667 * 3 2 1 5 5 C 1.46893 * 110.99838 * 295.28161 * 4 3 2 6 6 C 1.50700 * 109.47558 * 296.09456 * 5 4 3 7 7 H 1.08008 * 119.99498 * 354.95121 * 6 5 4 8 8 C 1.37880 * 120.00325 * 174.95084 * 6 5 4 9 9 N 1.31506 * 119.99785 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99785 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47011 * 60.00450 * 10 8 6 12 12 H 1.48502 * 109.46758 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47292 * 300.00014 * 10 8 6 14 14 C 1.46900 * 110.99897 * 59.23788 * 4 3 2 15 15 H 1.08994 * 109.50041 * 299.91988 * 14 4 3 16 16 C 1.53121 * 109.50120 * 179.80254 * 14 4 3 17 17 C 1.53117 * 109.16204 * 182.40294 * 16 14 4 18 18 C 1.53043 * 109.27430 * 57.65723 * 17 16 14 19 19 H 1.08995 * 109.46497 * 60.82391 * 18 17 16 20 20 C 1.53002 * 109.46154 * 180.80802 * 18 17 16 21 21 N 1.46848 * 109.51314 * 300.80996 * 18 17 16 22 22 C 1.46852 * 111.19501 * 61.76398 * 21 18 17 23 23 H 1.09001 * 109.46868 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47050 * 299.99522 * 1 2 3 25 25 H 1.08994 * 109.47614 * 60.00056 * 1 2 3 26 26 H 1.09001 * 109.47050 * 240.00478 * 2 1 3 27 27 H 1.08994 * 109.47614 * 119.99944 * 2 1 3 28 28 H 1.09002 * 109.47059 * 61.35548 * 3 2 1 29 29 H 1.09006 * 109.46699 * 301.35856 * 3 2 1 30 30 H 1.09003 * 109.47195 * 56.09158 * 5 4 3 31 31 H 1.08995 * 109.47321 * 176.09403 * 5 4 3 32 32 H 0.97000 * 120.00008 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.52220 * 302.31266 * 16 14 4 34 34 H 1.09000 * 109.52019 * 62.43337 * 16 14 4 35 35 H 1.08994 * 109.50074 * 177.59642 * 17 16 14 36 36 H 1.09003 * 109.50317 * 297.67885 * 17 16 14 37 37 H 1.09004 * 109.47295 * 59.99394 * 20 18 17 38 38 H 1.08989 * 109.47352 * 180.02562 * 20 18 17 39 39 H 1.09004 * 109.46378 * 299.99809 * 20 18 17 40 40 H 1.00902 * 111.01529 * 297.66401 * 21 18 17 41 41 H 1.09002 * 109.46461 * 178.22671 * 22 21 18 42 42 H 1.09004 * 109.45960 * 58.25109 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5086 1.4427 -0.0328 5 6 4.0625 0.8473 1.1905 6 6 3.6854 1.6958 2.3775 7 1 3.1640 2.6300 2.2296 8 6 4.0060 1.2795 3.6523 9 7 4.6413 0.1422 3.8322 10 14 3.5392 2.3316 5.1235 11 1 2.0645 2.5022 5.1620 12 1 3.9929 1.6667 6.3714 13 1 4.1885 3.6620 5.0066 14 6 4.0086 0.7506 -1.2282 15 1 3.6607 -0.2823 -1.2228 16 6 5.5396 0.7753 -1.2304 17 6 6.0512 0.1052 -2.5085 18 6 5.4736 0.8313 -3.7256 19 1 5.8002 1.8711 -3.7171 20 6 5.9661 0.1526 -5.0053 21 7 4.0068 0.7788 -3.6775 22 6 3.4901 1.4579 -2.4824 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6966 1.9493 0.9019 29 1 1.6568 1.9633 -0.8776 30 1 3.6604 -0.1575 1.3198 31 1 5.1483 0.7966 1.1105 32 1 4.8672 -0.1505 4.7290 33 1 5.8873 1.8077 -1.1960 34 1 5.9137 0.2358 -0.3603 35 1 7.1396 0.1576 -2.5362 36 1 5.7366 -0.9383 -2.5234 37 1 5.6398 -0.8874 -5.0138 38 1 5.5552 0.6698 -5.8722 39 1 7.0549 0.1921 -5.0415 40 1 3.6771 -0.1738 -3.7230 41 1 2.4005 1.4296 -2.4911 42 1 3.8264 2.4948 -2.4799 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246800325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:57 Heat of formation + Delta-G solvation = -33.111505 kcal Electronic energy + Delta-G solvation = -18500.467946 eV Core-core repulsion = 15899.643960 eV Total energy + Delta-G solvation = -2600.823986 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.69851 -38.09437 -34.88784 -33.95857 -32.66384 -31.85525 -29.19061 -27.31448 -26.28448 -24.17123 -23.58325 -22.82254 -21.64010 -20.22878 -18.43439 -17.16267 -16.64466 -16.40844 -16.00631 -15.84944 -15.47874 -15.22315 -14.58492 -14.36311 -14.07695 -13.71141 -13.59955 -13.35915 -12.98204 -12.84081 -12.68957 -12.61070 -12.47425 -12.39113 -12.26871 -12.05103 -11.94257 -11.76215 -11.67400 -11.49949 -11.20166 -11.11545 -10.57852 -9.28915 -8.87284 -8.19772 -6.28726 1.38658 1.41495 1.49241 2.39177 3.12829 3.15936 3.48101 3.80913 3.90899 4.06214 4.09193 4.18617 4.20801 4.38524 4.44162 4.50162 4.52848 4.67476 4.79522 4.83582 4.89639 4.93177 4.96611 5.04883 5.08969 5.09326 5.18645 5.20489 5.24656 5.33991 5.38022 5.39687 5.44107 5.51331 5.67704 6.03549 6.12527 6.38286 6.49763 6.72702 6.88840 7.40451 8.90745 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025862 B = 0.006693 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.394038 B = 4182.457648 C = 4880.170361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.152 4.152 3 C 0.066 3.934 4 N -0.537 5.537 5 C 0.207 3.793 6 C -0.519 4.519 7 H 0.060 0.940 8 C 0.003 3.997 9 N -0.936 5.936 10 Si 0.964 3.036 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.053 3.947 15 H 0.023 0.977 16 C -0.113 4.113 17 C -0.139 4.139 18 C 0.083 3.917 19 H 0.075 0.925 20 C -0.136 4.136 21 N -0.673 5.673 22 C 0.078 3.922 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.028 0.972 28 H 0.057 0.943 29 H 0.085 0.915 30 H -0.033 1.033 31 H 0.004 0.996 32 H 0.263 0.737 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.342 0.658 41 H 0.081 0.919 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 -0.285 -14.863 15.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.191 4.191 3 C -0.062 4.062 4 N -0.260 5.260 5 C 0.080 3.920 6 C -0.558 4.558 7 H 0.078 0.922 8 C -0.195 4.195 9 N -0.576 5.576 10 Si 0.789 3.211 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.194 1.194 14 C -0.058 4.058 15 H 0.041 0.959 16 C -0.151 4.151 17 C -0.179 4.179 18 C -0.027 4.027 19 H 0.093 0.907 20 C -0.193 4.193 21 N -0.302 5.302 22 C -0.052 4.052 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.103 0.897 30 H -0.015 1.015 31 H 0.022 0.978 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.160 0.840 41 H 0.099 0.901 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.085 0.667 -15.189 15.346 hybrid contribution 0.120 -1.350 2.297 2.667 sum -1.965 -0.684 -12.892 13.058 Atomic orbital electron populations 1.21611 0.93738 1.01857 1.02191 1.22019 0.97876 0.99061 1.00174 1.22113 0.87232 0.95225 1.01678 1.62284 1.07592 1.54074 1.02048 1.19388 0.93617 0.91917 0.87040 1.21445 1.36712 1.06240 0.91380 0.92224 1.25851 0.95228 0.96367 1.02043 1.70079 1.41923 1.22802 1.22839 0.85518 0.78925 0.78783 0.77912 1.19255 1.20944 1.19413 1.22373 0.95257 0.95533 0.92614 0.95943 1.21626 0.95061 1.00717 0.97705 1.22269 1.01633 0.99458 0.94552 1.21630 0.87116 0.99833 0.94167 0.90671 1.21737 1.01312 1.00381 0.95901 1.60900 1.09110 1.22098 1.38073 1.21929 0.99700 0.98044 0.85533 0.92409 0.93358 0.90888 0.92201 0.95324 0.92462 0.89697 1.01518 0.97760 0.92870 0.92438 0.94591 0.90471 0.92186 0.92372 0.91523 0.91162 0.84040 0.90073 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.91 71.98 0.71 -3.11 16 2 C -0.15 -5.45 5.26 30.60 0.16 -5.29 16 3 C 0.07 2.50 4.77 86.30 0.41 2.91 16 4 N -0.54 -23.12 4.59 -875.23 -4.02 -27.14 16 5 C 0.21 11.10 4.24 85.56 0.36 11.46 16 6 C -0.52 -29.80 8.32 25.60 0.21 -29.58 16 7 H 0.06 3.37 7.18 -2.91 -0.02 3.35 16 8 C 0.00 0.16 5.46 84.66 0.46 0.62 16 9 N -0.94 -57.20 13.29 21.45 0.28 -56.92 16 10 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 14 C 0.05 1.87 1.68 44.97 0.08 1.95 16 15 H 0.02 0.85 6.26 -2.39 -0.01 0.83 16 16 C -0.11 -4.00 4.87 30.67 0.15 -3.85 16 17 C -0.14 -3.66 5.36 30.65 0.16 -3.49 16 18 C 0.08 1.87 3.03 44.94 0.14 2.01 16 19 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 20 C -0.14 -2.32 9.47 71.98 0.68 -1.64 16 21 N -0.67 -16.16 6.50 -491.65 -3.20 -19.35 16 22 C 0.08 2.24 5.57 86.32 0.48 2.72 16 23 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 1.99 6.32 -2.39 -0.02 1.98 16 27 H 0.03 1.26 6.50 -2.39 -0.02 1.24 16 28 H 0.06 2.46 6.69 -2.39 -0.02 2.45 16 29 H 0.08 2.71 6.37 -2.38 -0.02 2.70 16 30 H -0.03 -1.93 6.28 -2.39 -0.01 -1.95 16 31 H 0.00 0.26 5.87 -2.39 -0.01 0.24 16 32 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.04 1.50 6.33 -2.39 -0.02 1.49 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.34 7.57 8.79 -89.69 -0.79 6.79 16 41 H 0.08 2.19 6.47 -2.39 -0.02 2.18 16 42 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -63.41 314.10 -0.70 -64.10 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.19 Total: 17.62 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 4.01 Total: -25.30 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -6.93 Total: -103.41 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -63.41 -0.70 -64.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246800325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.993 kcal (2) G-P(sol) polarization free energy of solvation -63.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds