Wall clock time and date at job start Thu Apr 9 2020 12:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47289 * 2 1 4 4 C 1.52991 * 109.47090 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47179 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99597 * 264.51326 * 5 4 3 7 7 H 1.08001 * 119.99797 * 146.48934 * 6 5 4 8 8 C 1.38806 * 120.00323 * 326.49232 * 6 5 4 9 9 N 1.31621 * 119.99843 * 337.38251 * 8 6 5 10 10 Si 1.86804 * 120.00303 * 157.38390 * 8 6 5 11 11 H 1.48496 * 109.46879 * 59.99917 * 10 8 6 12 12 H 1.48494 * 109.47107 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46731 * 299.99855 * 10 8 6 14 14 C 1.46497 * 120.00554 * 84.50949 * 5 4 3 15 15 H 1.08996 * 109.51893 * 359.87989 * 14 5 4 16 16 C 1.53111 * 109.57839 * 239.71906 * 14 5 4 17 17 C 1.53042 * 109.28141 * 182.40821 * 16 14 5 18 18 N 1.46852 * 109.52123 * 59.17473 * 17 16 14 19 19 C 1.46843 * 111.19896 * 298.26334 * 18 17 16 20 20 H 1.08999 * 109.46241 * 301.73274 * 19 18 17 21 21 C 1.53001 * 109.45790 * 181.75949 * 19 18 17 22 22 C 1.53031 * 109.52743 * 61.74292 * 19 18 17 23 23 H 1.08998 * 109.47165 * 60.00231 * 1 2 3 24 24 H 1.09004 * 109.47080 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47162 * 300.00022 * 1 2 3 26 26 H 1.09008 * 109.46806 * 239.99929 * 2 1 3 27 27 H 1.09002 * 109.47074 * 120.00525 * 2 1 3 28 28 H 1.09000 * 109.47036 * 59.99901 * 3 2 1 29 29 H 1.08998 * 109.46828 * 299.99975 * 3 2 1 30 30 H 1.09000 * 109.47504 * 59.99891 * 4 3 2 31 31 H 1.09005 * 109.47569 * 299.99947 * 4 3 2 32 32 H 0.96998 * 120.00237 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.50497 * 62.46454 * 16 14 5 34 34 H 1.09001 * 109.50109 * 302.34843 * 16 14 5 35 35 H 1.09000 * 109.45788 * 299.16214 * 17 16 14 36 36 H 1.08992 * 109.46706 * 179.19686 * 17 16 14 37 37 H 1.00901 * 110.99451 * 62.36355 * 18 17 16 38 38 H 1.08997 * 109.47751 * 59.99861 * 21 19 18 39 39 H 1.09005 * 109.46746 * 179.97438 * 21 19 18 40 40 H 1.08999 * 109.47347 * 299.99281 * 21 19 18 41 41 H 1.09000 * 109.50418 * 60.75696 * 22 19 18 42 42 H 1.08999 * 109.50843 * 180.87662 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 -0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.3930 3.4320 -1.1804 7 1 4.2304 4.4922 -1.3064 8 6 4.9409 2.6860 -2.2148 9 7 5.5457 1.5461 -1.9554 10 14 4.8201 3.2998 -3.9749 11 1 5.4947 4.6180 -4.0868 12 1 5.4792 2.3284 -4.8843 13 1 3.3910 3.4414 -4.3527 14 6 4.1886 3.5540 1.2632 15 1 3.8763 2.9137 2.0880 16 6 3.3078 4.8058 1.2253 17 6 3.4948 5.5949 2.5232 18 7 4.9066 5.9721 2.6690 19 6 5.7671 4.7853 2.7552 20 1 5.4560 4.1718 3.6007 21 6 7.2203 5.2225 2.9499 22 6 5.6479 3.9722 1.4643 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9329 0.9287 -0.8908 31 1 3.9337 0.9284 0.8891 32 1 5.9290 1.0250 -2.6781 33 1 2.2628 4.5126 1.1251 34 1 3.5949 5.4272 0.3770 35 1 3.1945 4.9776 3.3699 36 1 2.8798 6.4942 2.4934 37 1 5.1988 6.5768 1.9160 38 1 7.3057 5.8009 3.8699 39 1 7.8592 4.3417 3.0144 40 1 7.5315 5.8363 2.1047 41 1 5.9717 4.5805 0.6198 42 1 6.2748 3.0833 1.5348 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246858549.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:04 Heat of formation + Delta-G solvation = -8.110338 kcal Electronic energy + Delta-G solvation = -18534.963855 eV Core-core repulsion = 15935.224001 eV Total energy + Delta-G solvation = -2599.739854 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -38.62687 -35.89480 -33.78886 -32.01818 -31.39142 -29.52304 -27.38707 -26.44267 -24.30684 -22.74724 -21.50847 -20.48143 -19.95130 -19.58961 -16.40998 -15.24696 -14.69814 -14.61706 -14.53124 -14.16183 -13.61388 -13.47169 -13.24393 -13.04569 -12.30472 -12.10793 -11.98722 -11.72613 -11.50646 -11.26774 -11.11417 -10.96105 -10.90130 -10.75006 -10.50789 -10.40924 -10.27188 -10.18742 -9.90415 -9.76201 -9.51877 -9.35719 -8.41449 -7.90303 -6.55691 -5.76002 -3.27843 3.36437 3.42947 3.45184 4.48123 4.68052 5.15499 5.30077 5.46276 5.52003 5.57272 5.60729 5.67030 5.73234 5.80871 5.90284 6.04548 6.09241 6.14567 6.25170 6.27984 6.29821 6.34060 6.42659 6.46239 6.52344 6.56217 6.64934 6.72919 6.80152 6.92340 6.93223 7.11622 7.25412 7.32127 7.51935 7.77723 7.79378 7.84749 8.53504 9.22953 9.87708 10.43826 11.24678 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015441 B = 0.009410 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.925814 B = 2974.769262 C = 4102.843670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.134 4.134 4 C 0.145 3.855 5 N -0.581 5.581 6 C -0.248 4.248 7 H 0.059 0.941 8 C 0.008 3.992 9 N -0.888 5.888 10 Si 0.892 3.108 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.178 3.822 15 H 0.044 0.956 16 C -0.163 4.163 17 C 0.060 3.940 18 N -0.685 5.685 19 C 0.080 3.920 20 H 0.070 0.930 21 C -0.140 4.140 22 C -0.149 4.149 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.016 0.984 32 H 0.253 0.747 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.336 0.664 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.658 2.501 7.113 8.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.173 4.173 4 C 0.019 3.981 5 N -0.299 5.299 6 C -0.378 4.378 7 H 0.076 0.924 8 C -0.191 4.191 9 N -0.532 5.532 10 Si 0.722 3.278 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.211 1.211 14 C 0.070 3.930 15 H 0.062 0.938 16 C -0.204 4.204 17 C -0.070 4.070 18 N -0.314 5.314 19 C -0.030 4.030 20 H 0.088 0.912 21 C -0.198 4.198 22 C -0.190 4.190 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.034 0.966 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.153 0.847 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.589 2.446 7.688 8.830 hybrid contribution -0.119 -0.101 -2.014 2.020 sum -3.708 2.344 5.674 7.172 Atomic orbital electron populations 1.21769 0.97057 1.00425 1.01284 1.21477 0.94584 0.98644 1.01272 1.22206 1.00569 0.94130 1.00440 1.21002 0.89028 0.86390 1.01650 1.43919 1.73603 1.11311 1.01085 1.18879 1.34858 0.93778 0.90255 0.92380 1.25028 0.97246 0.97964 0.98900 1.69990 1.36414 1.15752 1.31012 0.86530 0.77853 0.78024 0.85382 1.20917 1.21698 1.21071 1.20322 0.91949 0.91576 0.89107 0.93763 1.22687 1.00743 0.99352 0.97575 1.21972 0.89278 0.98634 0.97159 1.60834 1.02671 1.17517 1.50347 1.21614 0.92546 0.90973 0.97893 0.91184 1.21767 0.95653 1.01047 1.01342 1.22646 0.99558 1.00198 0.96585 0.93117 0.93680 0.93345 0.92374 0.92931 0.94268 0.92672 0.88295 0.96579 0.93660 0.92553 0.91907 0.91832 0.91805 0.84697 0.92747 0.92486 0.92971 0.91538 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.12 -2.05 5.93 -26.73 -0.16 -2.21 16 3 C -0.13 -2.66 5.54 -26.74 -0.15 -2.81 16 4 C 0.15 3.39 5.18 -4.05 -0.02 3.37 16 5 N -0.58 -13.95 2.40 -165.53 -0.40 -14.35 16 6 C -0.25 -6.54 8.21 -15.06 -0.12 -6.67 16 7 H 0.06 1.55 6.78 -52.49 -0.36 1.19 16 8 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16 9 N -0.89 -25.19 11.34 55.49 0.63 -24.56 16 10 Si 0.89 21.51 29.61 -169.99 -5.03 16.48 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.18 3.65 2.70 -67.81 -0.18 3.47 16 15 H 0.04 0.90 7.87 -51.93 -0.41 0.49 16 16 C -0.16 -2.96 5.37 -26.65 -0.14 -3.10 16 17 C 0.06 0.91 6.55 -3.83 -0.03 0.88 16 18 N -0.68 -10.43 6.50 -106.76 -0.69 -11.12 16 19 C 0.08 1.28 3.03 -67.73 -0.21 1.07 16 20 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 21 C -0.14 -1.97 9.47 37.16 0.35 -1.62 16 22 C -0.15 -2.92 4.65 -26.65 -0.12 -3.05 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.10 2.62 5.33 -51.93 -0.28 2.34 16 31 H 0.02 0.37 8.04 -51.93 -0.42 -0.05 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 1.25 6.88 -51.93 -0.36 0.89 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.34 5.05 8.79 -39.29 -0.35 4.71 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.45 7.59 -51.93 -0.39 1.06 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 324.35 15.07 4.89 4.89 Total: -1.00 -27.16 324.35 -9.14 -36.30 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.03 Total: 4.64 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -0.50 Total: -12.27 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.46 Total: -50.04 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.16 -9.14 -36.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246858549.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.187 kcal (2) G-P(sol) polarization free energy of solvation -27.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds