Wall clock time and date at job start Thu Apr 9 2020 12:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47289 * 2 1 4 4 C 1.52991 * 109.47090 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47179 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99597 * 264.51326 * 5 4 3 7 7 H 1.08001 * 119.99797 * 146.48934 * 6 5 4 8 8 C 1.38806 * 120.00323 * 326.49232 * 6 5 4 9 9 N 1.31621 * 119.99843 * 337.38251 * 8 6 5 10 10 Si 1.86804 * 120.00303 * 157.38390 * 8 6 5 11 11 H 1.48496 * 109.46879 * 59.99917 * 10 8 6 12 12 H 1.48494 * 109.47107 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46731 * 299.99855 * 10 8 6 14 14 C 1.46497 * 120.00554 * 84.50949 * 5 4 3 15 15 H 1.08996 * 109.51893 * 359.87989 * 14 5 4 16 16 C 1.53111 * 109.57839 * 239.71906 * 14 5 4 17 17 C 1.53042 * 109.28141 * 182.40821 * 16 14 5 18 18 N 1.46852 * 109.52123 * 59.17473 * 17 16 14 19 19 C 1.46843 * 111.19896 * 298.26334 * 18 17 16 20 20 H 1.08999 * 109.46241 * 301.73274 * 19 18 17 21 21 C 1.53001 * 109.45790 * 181.75949 * 19 18 17 22 22 C 1.53031 * 109.52743 * 61.74292 * 19 18 17 23 23 H 1.08998 * 109.47165 * 60.00231 * 1 2 3 24 24 H 1.09004 * 109.47080 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47162 * 300.00022 * 1 2 3 26 26 H 1.09008 * 109.46806 * 239.99929 * 2 1 3 27 27 H 1.09002 * 109.47074 * 120.00525 * 2 1 3 28 28 H 1.09000 * 109.47036 * 59.99901 * 3 2 1 29 29 H 1.08998 * 109.46828 * 299.99975 * 3 2 1 30 30 H 1.09000 * 109.47504 * 59.99891 * 4 3 2 31 31 H 1.09005 * 109.47569 * 299.99947 * 4 3 2 32 32 H 0.96998 * 120.00237 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.50497 * 62.46454 * 16 14 5 34 34 H 1.09001 * 109.50109 * 302.34843 * 16 14 5 35 35 H 1.09000 * 109.45788 * 299.16214 * 17 16 14 36 36 H 1.08992 * 109.46706 * 179.19686 * 17 16 14 37 37 H 1.00901 * 110.99451 * 62.36355 * 18 17 16 38 38 H 1.08997 * 109.47751 * 59.99861 * 21 19 18 39 39 H 1.09005 * 109.46746 * 179.97438 * 21 19 18 40 40 H 1.08999 * 109.47347 * 299.99281 * 21 19 18 41 41 H 1.09000 * 109.50418 * 60.75696 * 22 19 18 42 42 H 1.08999 * 109.50843 * 180.87662 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 -0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.3930 3.4320 -1.1804 7 1 4.2304 4.4922 -1.3064 8 6 4.9409 2.6860 -2.2148 9 7 5.5457 1.5461 -1.9554 10 14 4.8201 3.2998 -3.9749 11 1 5.4947 4.6180 -4.0868 12 1 5.4792 2.3284 -4.8843 13 1 3.3910 3.4414 -4.3527 14 6 4.1886 3.5540 1.2632 15 1 3.8763 2.9137 2.0880 16 6 3.3078 4.8058 1.2253 17 6 3.4948 5.5949 2.5232 18 7 4.9066 5.9721 2.6690 19 6 5.7671 4.7853 2.7552 20 1 5.4560 4.1718 3.6007 21 6 7.2203 5.2225 2.9499 22 6 5.6479 3.9722 1.4643 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9329 0.9287 -0.8908 31 1 3.9337 0.9284 0.8891 32 1 5.9290 1.0250 -2.6781 33 1 2.2628 4.5126 1.1251 34 1 3.5949 5.4272 0.3770 35 1 3.1945 4.9776 3.3699 36 1 2.8798 6.4942 2.4934 37 1 5.1988 6.5768 1.9160 38 1 7.3057 5.8009 3.8699 39 1 7.8592 4.3417 3.0144 40 1 7.5315 5.8363 2.1047 41 1 5.9717 4.5805 0.6198 42 1 6.2748 3.0833 1.5348 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246858549.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:04 Heat of formation + Delta-G solvation = -23.370501 kcal Electronic energy + Delta-G solvation = -18535.625585 eV Core-core repulsion = 15935.224001 eV Total energy + Delta-G solvation = -2600.401585 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.12764 -37.57173 -35.32908 -33.68301 -32.96251 -31.10895 -29.07558 -27.79573 -26.15414 -24.22848 -22.95244 -21.89992 -21.59198 -21.24267 -18.29629 -17.06806 -16.27278 -16.10534 -15.96226 -15.79879 -15.19131 -15.04478 -14.80931 -14.41346 -13.83129 -13.57279 -13.45754 -13.12703 -13.00319 -12.85986 -12.79464 -12.64989 -12.41273 -12.39110 -12.12774 -11.84117 -11.79462 -11.76924 -11.61624 -11.34606 -11.24538 -11.08493 -10.44218 -9.25562 -8.54440 -7.80542 -5.35574 1.41856 1.45017 1.50634 2.49839 3.24695 3.36578 3.59350 4.01731 4.15760 4.17186 4.25342 4.30568 4.42132 4.45813 4.49054 4.62221 4.63965 4.76037 4.79709 4.93130 4.97082 5.01127 5.03054 5.04294 5.09271 5.14316 5.20338 5.28097 5.31744 5.36517 5.45903 5.54705 5.56965 5.61290 5.70705 5.89723 6.19127 6.47412 6.52592 7.19650 7.92565 8.42621 9.16289 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015441 B = 0.009410 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.925814 B = 2974.769262 C = 4102.843670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.118 4.118 4 C 0.145 3.855 5 N -0.596 5.596 6 C -0.244 4.244 7 H 0.053 0.947 8 C -0.041 4.041 9 N -0.918 5.918 10 Si 0.947 3.053 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.283 1.283 14 C 0.171 3.829 15 H 0.048 0.952 16 C -0.150 4.150 17 C 0.068 3.932 18 N -0.676 5.676 19 C 0.089 3.911 20 H 0.077 0.923 21 C -0.135 4.135 22 C -0.137 4.137 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.034 0.966 30 H 0.067 0.933 31 H 0.013 0.987 32 H 0.248 0.752 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.339 0.661 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.038 0.962 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.787 3.459 8.463 10.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.157 4.157 3 C -0.158 4.158 4 C 0.019 3.981 5 N -0.315 5.315 6 C -0.374 4.374 7 H 0.070 0.930 8 C -0.238 4.238 9 N -0.564 5.564 10 Si 0.776 3.224 11 H -0.204 1.204 12 H -0.221 1.221 13 H -0.209 1.209 14 C 0.064 3.936 15 H 0.066 0.934 16 C -0.191 4.191 17 C -0.063 4.063 18 N -0.304 5.304 19 C -0.022 4.022 20 H 0.096 0.904 21 C -0.193 4.193 22 C -0.178 4.178 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.031 0.969 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.156 0.844 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.731 3.428 9.057 10.778 hybrid contribution 0.238 -0.402 -2.379 2.424 sum -4.493 3.026 6.678 8.599 Atomic orbital electron populations 1.21710 0.94534 1.02014 1.01662 1.21441 0.96760 0.96246 1.01224 1.21980 0.97807 0.96234 0.99744 1.20923 0.91281 0.85968 0.99879 1.44157 1.73938 1.11604 1.01805 1.19010 1.33535 0.93573 0.91320 0.92959 1.25637 0.97723 0.98463 1.01928 1.70120 1.37882 1.16927 1.31428 0.85648 0.77620 0.77496 0.81595 1.20357 1.22071 1.20895 1.20535 0.93016 0.92377 0.87633 0.93374 1.22545 0.99755 0.98028 0.98785 1.21987 0.89538 0.99299 0.95445 1.60882 1.02612 1.16752 1.50197 1.21548 0.94155 0.90819 0.95632 0.90450 1.21722 0.94125 1.01302 1.02155 1.22521 0.98296 0.99141 0.97857 0.93417 0.91525 0.92295 0.93528 0.91952 0.93327 0.94741 0.91476 0.96889 0.94244 0.92775 0.93902 0.90753 0.89470 0.84420 0.90803 0.92396 0.93275 0.94289 0.94937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.91 71.98 0.71 -3.01 16 2 C -0.12 -3.89 5.93 30.59 0.18 -3.71 16 3 C -0.12 -4.68 5.54 30.59 0.17 -4.51 16 4 C 0.15 6.94 5.18 86.38 0.45 7.39 16 5 N -0.60 -29.21 2.40 -677.62 -1.63 -30.84 16 6 C -0.24 -13.16 8.21 84.03 0.69 -12.47 16 7 H 0.05 2.85 6.78 -2.91 -0.02 2.83 16 8 C -0.04 -2.28 4.91 84.86 0.42 -1.86 16 9 N -0.92 -53.82 11.34 21.65 0.25 -53.57 16 10 Si 0.95 45.09 29.61 68.60 2.03 47.13 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 13 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 14 C 0.17 6.99 2.70 45.07 0.12 7.11 16 15 H 0.05 1.92 7.87 -2.39 -0.02 1.90 16 16 C -0.15 -5.30 5.37 30.65 0.16 -5.13 16 17 C 0.07 1.86 6.55 86.33 0.57 2.43 16 18 N -0.68 -18.90 6.50 -491.69 -3.20 -22.10 16 19 C 0.09 2.70 3.03 44.94 0.14 2.83 16 20 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 21 C -0.14 -3.55 9.47 71.98 0.68 -2.87 16 22 C -0.14 -5.42 4.65 30.65 0.14 -5.28 16 23 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 3.69 5.33 -2.39 -0.01 3.68 16 31 H 0.01 0.60 8.04 -2.38 -0.02 0.58 16 32 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.04 1.68 6.88 -2.39 -0.02 1.66 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.34 9.47 8.79 -89.69 -0.79 8.68 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.04 1.73 7.59 -2.39 -0.02 1.71 16 42 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -59.24 324.35 2.05 -57.20 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.16 Total: 21.28 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 4.43 Total: -19.09 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -4.58 Total: -106.51 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.13 kcal Total: -59.24 2.05 -57.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246858549.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.825 kcal (2) G-P(sol) polarization free energy of solvation -59.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds