Wall clock time and date at job start Thu Apr 9 2020 12:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47339 * 2 1 4 4 C 1.52993 * 109.47224 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46971 * 179.97438 * 4 3 2 6 6 C 1.36942 * 119.99981 * 92.98350 * 5 4 3 7 7 H 1.07998 * 119.99567 * 222.13993 * 6 5 4 8 8 C 1.38803 * 120.00073 * 42.13056 * 6 5 4 9 9 N 1.31620 * 120.00262 * 207.49652 * 8 6 5 10 10 Si 1.86800 * 120.00029 * 27.49892 * 8 6 5 11 11 H 1.48505 * 109.47241 * 94.77695 * 10 8 6 12 12 H 1.48508 * 109.47170 * 214.77534 * 10 8 6 13 13 H 1.48499 * 109.47376 * 334.77395 * 10 8 6 14 14 C 1.46503 * 120.00268 * 272.97810 * 5 4 3 15 15 H 1.09000 * 109.49904 * 58.83618 * 14 5 4 16 16 C 1.53123 * 109.50336 * 298.72425 * 14 5 4 17 17 C 1.53116 * 109.15762 * 297.71101 * 16 14 5 18 18 C 1.53040 * 109.28005 * 302.34304 * 17 16 14 19 19 H 1.08996 * 109.46355 * 299.16761 * 18 17 16 20 20 C 1.53000 * 109.45326 * 179.19090 * 18 17 16 21 21 N 1.46846 * 109.51916 * 59.18131 * 18 17 16 22 22 C 1.46850 * 111.20182 * 298.25977 * 21 18 17 23 23 H 1.08998 * 109.47413 * 300.00151 * 1 2 3 24 24 H 1.08998 * 109.47067 * 60.00306 * 1 2 3 25 25 H 1.09001 * 109.47179 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47413 * 239.99849 * 2 1 3 27 27 H 1.08998 * 109.46933 * 120.00233 * 2 1 3 28 28 H 1.09005 * 109.46645 * 59.99753 * 3 2 1 29 29 H 1.09004 * 109.47179 * 300.00426 * 3 2 1 30 30 H 1.09005 * 109.47218 * 60.00462 * 4 3 2 31 31 H 1.08998 * 109.47417 * 299.99838 * 4 3 2 32 32 H 0.96996 * 120.00091 * 185.00114 * 9 8 6 33 33 H 1.09003 * 109.52016 * 57.61462 * 16 14 5 34 34 H 1.08995 * 109.52065 * 177.80437 * 16 14 5 35 35 H 1.09002 * 109.49821 * 182.40523 * 17 16 14 36 36 H 1.08997 * 109.53688 * 62.30819 * 17 16 14 37 37 H 1.09000 * 109.47151 * 304.03122 * 20 18 17 38 38 H 1.08997 * 109.46888 * 64.03378 * 20 18 17 39 39 H 1.09004 * 109.47041 * 184.03442 * 20 18 17 40 40 H 1.00909 * 110.99889 * 62.35824 * 21 18 17 41 41 H 1.08998 * 109.45892 * 301.72633 * 22 21 18 42 42 H 1.08994 * 109.45491 * 181.75309 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3442 3.4494 1.1841 7 1 4.0494 4.4771 1.3367 8 6 5.0127 2.7627 2.1882 9 7 4.8315 3.0980 3.4480 10 14 6.1696 1.3626 1.7516 11 1 7.5592 1.8785 1.6611 12 1 6.0980 0.3153 2.8020 13 1 5.7715 0.7807 0.4446 14 6 4.2409 3.5356 -1.2673 15 1 3.2920 3.5754 -1.8022 16 6 5.2793 2.8021 -2.1207 17 6 6.6235 2.8031 -1.3876 18 6 7.0439 4.2472 -1.1050 19 1 7.1554 4.7840 -2.0471 20 6 8.3771 4.2523 -0.3545 21 7 6.0185 4.9053 -0.2854 22 6 4.7302 4.9584 -0.9882 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.9337 0.9285 -0.8892 31 1 3.9329 0.9288 0.8908 32 1 5.3523 2.6678 4.1441 33 1 4.9550 1.7745 -2.2856 34 1 5.3868 3.3094 -3.0794 35 1 7.3772 2.3196 -2.0090 36 1 6.5259 2.2617 -0.4466 37 1 8.2856 3.6550 0.5527 38 1 9.1541 3.8293 -0.9912 39 1 8.6414 5.2762 -0.0901 40 1 5.9235 4.4493 0.6098 41 1 4.8526 5.4918 -1.9309 42 1 3.9998 5.4787 -0.3687 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246862325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:11 Heat of formation + Delta-G solvation = 8.062665 kcal Electronic energy + Delta-G solvation = -19274.616927 eV Core-core repulsion = 16675.578387 eV Total energy + Delta-G solvation = -2599.038540 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.94895 -35.71032 -33.73049 -32.17506 -30.97993 -30.35233 -27.86147 -26.27427 -23.95884 -22.50266 -22.21903 -20.63013 -20.28965 -18.87304 -16.65294 -15.64727 -14.81218 -14.62196 -14.44660 -14.11536 -13.65993 -13.51500 -13.22562 -12.79511 -12.54300 -12.51083 -11.93622 -11.77026 -11.49029 -11.30818 -11.16637 -11.04403 -10.92391 -10.78769 -10.60252 -10.44749 -10.32192 -10.02989 -9.78126 -9.74191 -9.65361 -9.22097 -8.48543 -7.34075 -6.66562 -6.16156 -3.52213 3.27777 3.41771 3.44219 4.45669 4.83010 5.15333 5.25126 5.40338 5.46541 5.52706 5.60441 5.65436 5.73923 5.89557 5.96841 6.00433 6.07910 6.16727 6.25212 6.26272 6.30554 6.32912 6.35447 6.41939 6.49630 6.52671 6.59283 6.62858 6.66190 6.71509 6.80478 6.91757 6.99143 7.07586 7.16588 7.96526 8.08278 8.34502 8.67649 8.99316 9.62130 10.12547 10.98499 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021851 B = 0.010604 C = 0.008858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.099506 B = 2639.878051 C = 3160.138898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.135 4.135 4 C 0.150 3.850 5 N -0.600 5.600 6 C -0.272 4.272 7 H 0.082 0.918 8 C 0.050 3.950 9 N -0.877 5.877 10 Si 0.843 3.157 11 H -0.284 1.284 12 H -0.299 1.299 13 H -0.255 1.255 14 C 0.136 3.864 15 H 0.034 0.966 16 C -0.132 4.132 17 C -0.153 4.153 18 C 0.088 3.912 19 H 0.061 0.939 20 C -0.146 4.146 21 N -0.689 5.689 22 C 0.078 3.922 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.033 0.967 31 H 0.049 0.951 32 H 0.264 0.736 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.059 0.941 40 H 0.377 0.623 41 H 0.052 0.948 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.655 -2.400 -8.921 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.174 4.174 4 C 0.025 3.975 5 N -0.323 5.323 6 C -0.401 4.401 7 H 0.099 0.901 8 C -0.153 4.153 9 N -0.516 5.516 10 Si 0.671 3.329 11 H -0.211 1.211 12 H -0.227 1.227 13 H -0.180 1.180 14 C 0.028 3.972 15 H 0.052 0.948 16 C -0.171 4.171 17 C -0.192 4.192 18 C -0.023 4.023 19 H 0.079 0.921 20 C -0.204 4.204 21 N -0.331 5.331 22 C -0.053 4.053 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.211 0.789 41 H 0.071 0.929 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.470 -1.796 -8.844 9.037 hybrid contribution 0.458 -1.953 -0.092 2.008 sum -0.012 -3.749 -8.936 9.691 Atomic orbital electron populations 1.21749 0.96600 1.00586 1.01570 1.21512 0.95197 0.98430 1.01127 1.22131 0.99055 0.94559 1.01696 1.21142 0.91201 0.86578 0.98600 1.44103 1.75202 1.11411 1.01593 1.18664 1.32825 0.99096 0.89480 0.90095 1.25581 0.97951 0.96892 0.94921 1.70026 1.38364 1.44064 0.99100 0.87595 0.83175 0.83808 0.78326 1.21148 1.22702 1.17967 1.21139 0.94586 0.93956 0.87525 0.94820 1.22018 0.96783 1.00416 0.97904 1.22363 0.96343 0.99027 1.01475 1.21351 0.92466 0.92116 0.96343 0.92098 1.21829 0.96272 1.01875 1.00427 1.61191 1.05480 1.57654 1.08815 1.21751 0.92032 0.94092 0.97422 0.92811 0.93201 0.93597 0.92955 0.92474 0.91567 0.93301 0.94915 0.93228 0.92587 0.93137 0.93260 0.93849 0.90641 0.92738 0.93330 0.92241 0.78911 0.92918 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.95 5.93 -26.73 -0.16 -2.11 16 3 C -0.13 -2.51 5.54 -26.74 -0.15 -2.66 16 4 C 0.15 3.17 3.71 -4.04 -0.02 3.16 16 5 N -0.60 -13.33 1.54 -165.57 -0.26 -13.59 16 6 C -0.27 -6.95 6.12 -15.06 -0.09 -7.04 16 7 H 0.08 2.27 6.66 -52.49 -0.35 1.92 16 8 C 0.05 1.34 4.80 -17.43 -0.08 1.26 16 9 N -0.88 -25.27 13.96 55.49 0.77 -24.50 16 10 Si 0.84 20.72 23.09 -169.99 -3.92 16.79 16 11 H -0.28 -7.00 6.41 56.52 0.36 -6.64 16 12 H -0.30 -7.64 7.11 56.52 0.40 -7.23 16 13 H -0.25 -6.00 5.05 56.52 0.29 -5.71 16 14 C 0.14 2.66 3.33 -67.85 -0.23 2.43 16 15 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 16 C -0.13 -2.39 5.42 -26.61 -0.14 -2.53 16 17 C -0.15 -2.94 5.19 -26.65 -0.14 -3.08 16 18 C 0.09 1.64 3.03 -67.72 -0.21 1.43 16 19 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 20 C -0.15 -2.58 9.47 37.16 0.35 -2.23 16 21 N -0.69 -14.28 6.47 -106.77 -0.69 -14.97 16 22 C 0.08 1.50 5.46 -3.84 -0.02 1.48 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.66 6.45 -51.93 -0.33 0.32 16 31 H 0.05 1.15 4.62 -51.93 -0.24 0.91 16 32 H 0.26 7.30 8.32 -40.82 -0.34 6.96 16 33 H 0.05 0.92 6.63 -51.93 -0.34 0.57 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.65 2.79 -51.93 -0.15 1.50 16 37 H 0.05 1.08 7.45 -51.93 -0.39 0.70 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.38 8.92 4.93 -39.29 -0.19 8.73 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.48 7.13 -51.93 -0.37 1.11 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -26.67 300.52 -7.65 -34.33 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -7.57 Total: 8.91 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -0.51 Total: -11.50 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.17 Total: -53.06 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -3.92 Total: 16.79 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.67 -7.65 -34.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246862325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.389 kcal (2) G-P(sol) polarization free energy of solvation -26.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds