Wall clock time and date at job start Thu Apr 9 2020 12:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47339 * 2 1 4 4 C 1.52993 * 109.47224 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46971 * 179.97438 * 4 3 2 6 6 C 1.36942 * 119.99981 * 92.98350 * 5 4 3 7 7 H 1.07998 * 119.99567 * 222.13993 * 6 5 4 8 8 C 1.38803 * 120.00073 * 42.13056 * 6 5 4 9 9 N 1.31620 * 120.00262 * 207.49652 * 8 6 5 10 10 Si 1.86800 * 120.00029 * 27.49892 * 8 6 5 11 11 H 1.48505 * 109.47241 * 94.77695 * 10 8 6 12 12 H 1.48508 * 109.47170 * 214.77534 * 10 8 6 13 13 H 1.48499 * 109.47376 * 334.77395 * 10 8 6 14 14 C 1.46503 * 120.00268 * 272.97810 * 5 4 3 15 15 H 1.09000 * 109.49904 * 58.83618 * 14 5 4 16 16 C 1.53123 * 109.50336 * 298.72425 * 14 5 4 17 17 C 1.53116 * 109.15762 * 297.71101 * 16 14 5 18 18 C 1.53040 * 109.28005 * 302.34304 * 17 16 14 19 19 H 1.08996 * 109.46355 * 299.16761 * 18 17 16 20 20 C 1.53000 * 109.45326 * 179.19090 * 18 17 16 21 21 N 1.46846 * 109.51916 * 59.18131 * 18 17 16 22 22 C 1.46850 * 111.20182 * 298.25977 * 21 18 17 23 23 H 1.08998 * 109.47413 * 300.00151 * 1 2 3 24 24 H 1.08998 * 109.47067 * 60.00306 * 1 2 3 25 25 H 1.09001 * 109.47179 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47413 * 239.99849 * 2 1 3 27 27 H 1.08998 * 109.46933 * 120.00233 * 2 1 3 28 28 H 1.09005 * 109.46645 * 59.99753 * 3 2 1 29 29 H 1.09004 * 109.47179 * 300.00426 * 3 2 1 30 30 H 1.09005 * 109.47218 * 60.00462 * 4 3 2 31 31 H 1.08998 * 109.47417 * 299.99838 * 4 3 2 32 32 H 0.96996 * 120.00091 * 185.00114 * 9 8 6 33 33 H 1.09003 * 109.52016 * 57.61462 * 16 14 5 34 34 H 1.08995 * 109.52065 * 177.80437 * 16 14 5 35 35 H 1.09002 * 109.49821 * 182.40523 * 17 16 14 36 36 H 1.08997 * 109.53688 * 62.30819 * 17 16 14 37 37 H 1.09000 * 109.47151 * 304.03122 * 20 18 17 38 38 H 1.08997 * 109.46888 * 64.03378 * 20 18 17 39 39 H 1.09004 * 109.47041 * 184.03442 * 20 18 17 40 40 H 1.00909 * 110.99889 * 62.35824 * 21 18 17 41 41 H 1.08998 * 109.45892 * 301.72633 * 22 21 18 42 42 H 1.08994 * 109.45491 * 181.75309 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3442 3.4494 1.1841 7 1 4.0494 4.4771 1.3367 8 6 5.0127 2.7627 2.1882 9 7 4.8315 3.0980 3.4480 10 14 6.1696 1.3626 1.7516 11 1 7.5592 1.8785 1.6611 12 1 6.0980 0.3153 2.8020 13 1 5.7715 0.7807 0.4446 14 6 4.2409 3.5356 -1.2673 15 1 3.2920 3.5754 -1.8022 16 6 5.2793 2.8021 -2.1207 17 6 6.6235 2.8031 -1.3876 18 6 7.0439 4.2472 -1.1050 19 1 7.1554 4.7840 -2.0471 20 6 8.3771 4.2523 -0.3545 21 7 6.0185 4.9053 -0.2854 22 6 4.7302 4.9584 -0.9882 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.9337 0.9285 -0.8892 31 1 3.9329 0.9288 0.8908 32 1 5.3523 2.6678 4.1441 33 1 4.9550 1.7745 -2.2856 34 1 5.3868 3.3094 -3.0794 35 1 7.3772 2.3196 -2.0090 36 1 6.5259 2.2617 -0.4466 37 1 8.2856 3.6550 0.5527 38 1 9.1541 3.8293 -0.9912 39 1 8.6414 5.2762 -0.0901 40 1 5.9235 4.4493 0.6098 41 1 4.8526 5.4918 -1.9309 42 1 3.9998 5.4787 -0.3687 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246862325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:10 Heat of formation + Delta-G solvation = -8.405770 kcal Electronic energy + Delta-G solvation = -19275.331052 eV Core-core repulsion = 16675.578387 eV Total energy + Delta-G solvation = -2599.752665 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.54035 -37.26750 -35.25009 -34.03317 -32.49025 -31.95400 -29.39953 -27.85850 -25.64580 -24.04218 -23.77014 -22.04522 -21.82210 -20.50697 -18.55979 -17.39852 -16.35197 -16.23818 -16.02215 -15.60958 -15.18945 -15.09347 -14.84091 -14.45629 -14.10594 -14.03849 -13.39192 -13.30216 -13.06384 -12.81397 -12.73195 -12.68957 -12.49367 -12.27444 -12.06871 -11.95731 -11.71146 -11.63619 -11.49341 -11.29460 -11.22947 -10.97291 -10.50277 -8.95947 -8.48528 -8.24896 -5.55056 1.29337 1.39610 1.45340 2.42688 2.96486 3.35613 3.73577 4.04677 4.10439 4.13009 4.24351 4.26557 4.37447 4.42572 4.51712 4.56824 4.63547 4.76748 4.82823 4.85505 4.93373 4.99127 5.00152 5.02629 5.04893 5.09564 5.10697 5.18050 5.25638 5.32462 5.37489 5.43468 5.47889 5.57167 5.59485 5.94818 6.25187 6.58113 6.86776 7.09198 7.68031 8.16069 8.94164 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021851 B = 0.010604 C = 0.008858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.099506 B = 2639.878051 C = 3160.138898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.124 4.124 4 C 0.147 3.853 5 N -0.608 5.608 6 C -0.236 4.236 7 H 0.048 0.952 8 C 0.005 3.995 9 N -0.928 5.928 10 Si 0.896 3.104 11 H -0.289 1.289 12 H -0.317 1.317 13 H -0.236 1.236 14 C 0.131 3.869 15 H 0.048 0.952 16 C -0.124 4.124 17 C -0.158 4.158 18 C 0.086 3.914 19 H 0.086 0.914 20 C -0.143 4.143 21 N -0.703 5.703 22 C 0.078 3.922 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.024 0.976 32 H 0.260 0.740 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.022 0.978 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.359 0.641 41 H 0.083 0.917 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 -3.178 -12.186 12.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.164 4.164 4 C 0.022 3.978 5 N -0.332 5.332 6 C -0.366 4.366 7 H 0.066 0.934 8 C -0.194 4.194 9 N -0.570 5.570 10 Si 0.725 3.275 11 H -0.217 1.217 12 H -0.246 1.246 13 H -0.160 1.160 14 C 0.024 3.976 15 H 0.065 0.935 16 C -0.164 4.164 17 C -0.197 4.197 18 C -0.024 4.024 19 H 0.104 0.896 20 C -0.201 4.201 21 N -0.342 5.342 22 C -0.052 4.052 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.189 0.811 41 H 0.101 0.899 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.397 -2.577 -12.182 12.458 hybrid contribution 0.394 -1.620 0.841 1.867 sum -0.004 -4.197 -11.341 12.093 Atomic orbital electron populations 1.21711 0.94747 1.02005 1.01659 1.21489 0.96842 0.96133 1.01526 1.21976 0.97214 0.96573 1.00621 1.21186 0.92774 0.85689 0.98153 1.44228 1.75468 1.11842 1.01666 1.18395 1.30320 0.97559 0.90338 0.93416 1.25963 0.99643 0.99077 0.94738 1.70119 1.40249 1.46586 1.00066 0.86764 0.81417 0.81144 0.78127 1.21686 1.24648 1.16043 1.21313 0.95975 0.93860 0.86444 0.93457 1.21951 0.95260 1.00586 0.98556 1.22389 0.97756 0.98993 1.00564 1.21492 0.91917 0.92100 0.96938 0.89628 1.21821 0.96906 1.01820 0.99541 1.61169 1.06686 1.57853 1.08509 1.21790 0.91067 0.94245 0.98128 0.93696 0.92184 0.91539 0.91189 0.93442 0.94685 0.92210 0.93137 0.95717 0.93056 0.92895 0.90183 0.91581 0.93634 0.95854 0.90528 0.91782 0.81144 0.89898 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.91 71.98 0.71 -2.82 16 2 C -0.12 -3.57 5.93 30.59 0.18 -3.39 16 3 C -0.12 -4.48 5.54 30.59 0.17 -4.31 16 4 C 0.15 6.02 3.71 86.38 0.32 6.34 16 5 N -0.61 -26.55 1.54 -677.75 -1.05 -27.59 16 6 C -0.24 -12.32 6.12 84.03 0.51 -11.81 16 7 H 0.05 2.80 6.66 -2.91 -0.02 2.79 16 8 C 0.00 0.25 4.80 84.86 0.41 0.66 16 9 N -0.93 -55.98 13.96 21.65 0.30 -55.67 16 10 Si 0.90 44.17 23.09 68.60 1.58 45.76 16 11 H -0.29 -14.27 6.41 99.48 0.64 -13.63 16 12 H -0.32 -16.38 7.11 99.48 0.71 -15.67 16 13 H -0.24 -10.75 5.05 99.48 0.50 -10.25 16 14 C 0.13 4.79 3.33 45.04 0.15 4.94 16 15 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 16 C -0.12 -3.98 5.42 30.67 0.17 -3.81 16 17 C -0.16 -5.53 5.19 30.65 0.16 -5.37 16 18 C 0.09 2.95 3.03 44.94 0.14 3.09 16 19 H 0.09 2.55 8.14 -2.39 -0.02 2.54 16 20 C -0.14 -4.77 9.47 71.98 0.68 -4.09 16 21 N -0.70 -28.38 6.47 -491.70 -3.18 -31.56 16 22 C 0.08 2.87 5.46 86.32 0.47 3.34 16 23 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.05 1.89 6.45 -2.38 -0.02 1.87 16 31 H 0.02 1.13 4.62 -2.39 -0.01 1.12 16 32 H 0.26 15.14 8.32 -92.71 -0.77 14.37 16 33 H 0.05 1.68 6.63 -2.39 -0.02 1.67 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 36 H 0.05 1.88 2.79 -2.39 -0.01 1.88 16 37 H 0.02 0.89 7.45 -2.39 -0.02 0.88 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.36 17.15 4.93 -89.69 -0.44 16.71 16 41 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.05 2.06 7.13 -2.39 -0.02 2.04 16 Total: -1.00 -59.19 300.52 1.99 -57.20 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.26 Total: 29.11 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 4.07 Total: -17.23 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -3.92 Total: -114.83 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.58 Total: 45.76 kcal Total: -59.19 1.99 -57.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246862325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.791 kcal (2) G-P(sol) polarization free energy of solvation -59.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds