Wall clock time and date at job start Thu Apr 9 2020 12:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46917 * 2 1 4 4 H 1.09006 * 109.46903 * 55.16960 * 3 2 1 5 5 C 1.50696 * 109.47084 * 175.16236 * 3 2 1 6 6 H 1.07999 * 119.99889 * 120.00179 * 5 3 2 7 7 C 1.37882 * 120.00467 * 300.00390 * 5 3 2 8 8 N 1.31514 * 120.00256 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99556 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47024 * 90.00485 * 9 7 5 11 11 H 1.48501 * 109.47042 * 209.99998 * 9 7 5 12 12 H 1.48499 * 109.47406 * 330.00318 * 9 7 5 13 13 N 1.46898 * 109.47337 * 295.16517 * 3 2 1 14 14 C 1.46905 * 110.99708 * 135.62376 * 13 3 2 15 15 C 1.52998 * 109.50632 * 54.71651 * 14 13 3 16 16 C 1.53116 * 109.50077 * 174.79551 * 14 13 3 17 17 C 1.53122 * 109.16207 * 177.63213 * 16 14 13 18 18 C 1.53035 * 109.27848 * 302.34717 * 17 16 14 19 19 N 1.46841 * 109.51541 * 59.17947 * 18 17 16 20 20 C 1.46898 * 111.00123 * 174.15479 * 19 18 17 21 21 C 1.46850 * 111.20110 * 298.24468 * 19 18 17 22 22 H 1.09000 * 109.47200 * 305.62317 * 1 2 3 23 23 H 1.08994 * 109.47623 * 65.63321 * 1 2 3 24 24 H 1.09007 * 109.47044 * 185.63160 * 1 2 3 25 25 H 1.08999 * 109.46945 * 240.00331 * 2 1 3 26 26 H 1.08999 * 109.47098 * 119.99891 * 2 1 3 27 27 H 0.96996 * 120.00119 * 179.97438 * 8 7 5 28 28 H 1.00899 * 111.00244 * 11.67462 * 13 3 2 29 29 H 1.08996 * 109.47013 * 174.35865 * 15 14 13 30 30 H 1.09002 * 109.46693 * 294.36138 * 15 14 13 31 31 H 1.09001 * 109.46923 * 54.35816 * 15 14 13 32 32 H 1.09002 * 109.52519 * 57.72561 * 16 14 13 33 33 H 1.09006 * 109.52357 * 297.54048 * 16 14 13 34 34 H 1.09003 * 109.50314 * 182.40473 * 17 16 14 35 35 H 1.09000 * 109.50128 * 62.28673 * 17 16 14 36 36 H 1.09002 * 109.46180 * 179.19441 * 18 17 16 37 37 H 1.09000 * 109.46099 * 299.16966 * 18 17 16 38 38 H 1.09002 * 109.47403 * 56.04793 * 20 19 18 39 39 H 1.09001 * 109.47346 * 176.04707 * 20 19 18 40 40 H 1.09005 * 109.47231 * 296.05027 * 20 19 18 41 41 H 1.08999 * 109.46856 * 301.73780 * 21 19 18 42 42 H 1.09004 * 109.45065 * 181.76433 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6076 1.9807 0.8436 5 6 3.5421 1.4442 0.1198 6 1 4.1453 1.8896 -0.6575 7 6 4.1466 0.8772 1.2218 8 7 5.4576 0.8783 1.3260 9 14 3.1033 0.1076 2.5665 10 1 2.8807 -1.3283 2.2596 11 1 3.8046 0.2322 3.8696 12 1 1.7952 0.8067 2.6395 13 7 1.6479 2.1005 -1.2535 14 6 1.1280 3.4507 -0.9990 15 6 2.1589 4.2535 -0.2031 16 6 0.8523 4.1519 -2.3320 17 6 0.2556 5.5353 -2.0582 18 6 -1.0205 5.3798 -1.2280 19 7 -0.7036 4.7045 0.0369 20 6 -1.8773 4.6615 0.9192 21 6 -0.1734 3.3556 -0.1995 22 1 -0.3633 0.5986 0.8353 23 1 -0.3634 0.4240 -0.9360 24 1 -0.3633 -1.0228 0.1009 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.8828 0.4798 2.1014 28 1 0.9756 1.5436 -1.7594 29 1 1.8172 5.2835 -0.1009 30 1 2.2795 3.8108 0.7856 31 1 3.1146 4.2381 -0.7271 32 1 0.1473 3.5602 -2.9159 33 1 1.7847 4.2605 -2.8861 34 1 0.0176 6.0225 -3.0038 35 1 0.9764 6.1400 -1.5079 36 1 -1.4401 6.3639 -1.0191 37 1 -1.7459 4.7864 -1.7846 38 1 -2.7055 4.1804 0.3990 39 1 -1.6352 4.0953 1.8186 40 1 -2.1622 5.6770 1.1947 41 1 -0.9029 2.7719 -0.7610 42 1 0.0222 2.8698 0.7564 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:27 Heat of formation + Delta-G solvation = 6.478056 kcal Electronic energy + Delta-G solvation = -19171.938384 eV Core-core repulsion = 16572.831130 eV Total energy + Delta-G solvation = -2599.107254 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.57839 -36.42769 -33.81766 -32.12767 -31.55299 -28.76212 -27.20429 -26.67040 -25.90340 -22.85531 -22.57532 -21.41185 -19.67563 -18.12356 -16.71893 -16.06051 -15.15230 -14.83488 -14.56035 -14.28277 -14.03787 -13.78146 -13.12883 -12.90818 -12.63512 -12.45586 -12.38850 -12.00247 -11.79262 -11.73848 -11.25059 -11.10967 -10.96390 -10.69961 -10.64835 -10.41569 -10.27393 -10.14598 -9.93875 -9.73986 -9.31892 -9.12970 -8.45574 -8.14912 -7.29811 -5.96729 -3.91375 3.27984 3.38292 3.40942 4.07106 4.45735 4.86117 5.06675 5.14771 5.27837 5.32814 5.35127 5.48959 5.49993 5.63002 5.69642 5.72116 5.79786 5.88062 5.90584 5.92165 5.97109 6.04241 6.17034 6.25068 6.42952 6.52659 6.54162 6.59832 6.68337 6.69866 6.86219 6.98318 7.14733 7.20892 7.27989 7.33964 7.82280 8.05110 8.36760 8.83189 9.18570 9.67072 11.17005 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027354 B = 0.008427 C = 0.007840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.373835 B = 3321.896861 C = 3570.624861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.146 4.146 3 C 0.187 3.813 4 H 0.018 0.982 5 C -0.482 4.482 6 H 0.082 0.918 7 C 0.064 3.936 8 N -0.903 5.903 9 Si 0.878 3.122 10 H -0.281 1.281 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.661 5.661 14 C 0.124 3.876 15 C -0.118 4.118 16 C -0.106 4.106 17 C -0.118 4.118 18 C 0.057 3.943 19 N -0.535 5.535 20 C 0.026 3.974 21 C 0.030 3.970 22 H 0.044 0.956 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.261 0.739 28 H 0.318 0.682 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.026 0.974 38 H 0.019 0.981 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.023 0.977 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.215 6.371 -3.864 16.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.184 4.184 3 C 0.079 3.921 4 H 0.035 0.965 5 C -0.521 4.521 6 H 0.100 0.900 7 C -0.136 4.136 8 N -0.542 5.542 9 Si 0.709 3.291 10 H -0.209 1.209 11 H -0.226 1.226 12 H -0.195 1.195 13 N -0.290 5.290 14 C 0.031 3.969 15 C -0.175 4.175 16 C -0.144 4.144 17 C -0.156 4.156 18 C -0.071 4.071 19 N -0.259 5.259 20 C -0.123 4.123 21 C -0.100 4.100 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.136 0.864 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.038 0.962 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.039 6.796 -3.657 15.152 hybrid contribution -2.113 -1.405 0.895 2.690 sum -15.152 5.392 -2.763 16.318 Atomic orbital electron populations 1.21947 0.98350 1.00458 1.00548 1.22337 0.92850 1.01362 1.01846 1.19720 0.96897 0.88316 0.87189 0.96500 1.21069 0.88985 1.36124 1.05928 0.90016 1.24956 0.94660 0.96265 0.97736 1.69880 1.08399 1.46187 1.29782 0.87013 0.80676 0.79699 0.81694 1.20858 1.22579 1.19476 1.60838 1.43066 1.01758 1.23388 1.20877 0.91547 0.91141 0.93294 1.21684 0.97674 0.97858 1.00313 1.21580 1.00779 0.94964 0.97061 1.21647 0.97088 0.98015 0.98827 1.22083 0.96808 0.98286 0.89893 1.61893 1.30421 1.19290 1.14339 1.22346 0.91262 1.01607 0.97067 1.23111 0.97205 0.88456 1.01201 0.93659 0.93409 0.93703 0.91524 0.92779 0.92891 0.86395 0.93035 0.92187 0.92172 0.93178 0.90895 0.91945 0.90522 0.91298 0.95565 0.96244 0.91598 0.91650 0.95879 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.52 37.16 0.35 -2.30 16 2 C -0.15 -3.08 4.86 -26.73 -0.13 -3.21 16 3 C 0.19 4.26 0.72 -68.87 -0.05 4.21 16 4 H 0.02 0.42 3.96 -51.93 -0.21 0.21 16 5 C -0.48 -13.38 8.57 -34.44 -0.30 -13.67 16 6 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 7 C 0.06 1.85 5.45 -17.82 -0.10 1.75 16 8 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 9 Si 0.88 22.00 24.41 -169.99 -4.15 17.85 16 10 H -0.28 -6.90 6.83 56.52 0.39 -6.51 16 11 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 12 H -0.27 -6.46 6.53 56.52 0.37 -6.09 16 13 N -0.66 -13.15 5.92 -94.17 -0.56 -13.70 16 14 C 0.12 2.16 0.69 -131.52 -0.09 2.07 16 15 C -0.12 -2.29 7.24 37.16 0.27 -2.02 16 16 C -0.11 -1.57 5.09 -26.61 -0.14 -1.70 16 17 C -0.12 -1.48 5.74 -26.65 -0.15 -1.64 16 18 C 0.06 0.71 5.46 -3.84 -0.02 0.69 16 19 N -0.53 -7.72 4.30 -242.96 -1.04 -8.76 16 20 C 0.03 0.32 9.62 60.06 0.58 0.89 16 21 C 0.03 0.49 3.91 -3.83 -0.01 0.47 16 22 H 0.04 0.77 7.78 -51.93 -0.40 0.37 16 23 H 0.05 0.73 6.82 -51.93 -0.35 0.38 16 24 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 25 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.05 1.24 3.22 -51.93 -0.17 1.07 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.32 5.77 6.66 -39.29 -0.26 5.51 16 29 H 0.05 0.90 5.91 -51.93 -0.31 0.59 16 30 H 0.06 1.32 6.50 -51.93 -0.34 0.99 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.02 6.46 -51.93 -0.34 0.69 16 36 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.83 8.02 -51.93 -0.42 0.41 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 1.41 5.98 -51.93 -0.31 1.10 16 LS Contribution 303.12 15.07 4.57 4.57 Total: -1.00 -29.48 303.12 -7.55 -37.02 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.35 Total: 4.48 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 0.21 Total: -14.45 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: -0.83 Total: -49.48 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.15 Total: 17.85 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.48 -7.55 -37.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.503 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds