Wall clock time and date at job start Thu Apr 9 2020 12:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46917 * 2 1 4 4 H 1.09006 * 109.46903 * 55.16960 * 3 2 1 5 5 C 1.50696 * 109.47084 * 175.16236 * 3 2 1 6 6 H 1.07999 * 119.99889 * 120.00179 * 5 3 2 7 7 C 1.37882 * 120.00467 * 300.00390 * 5 3 2 8 8 N 1.31514 * 120.00256 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99556 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47024 * 90.00485 * 9 7 5 11 11 H 1.48501 * 109.47042 * 209.99998 * 9 7 5 12 12 H 1.48499 * 109.47406 * 330.00318 * 9 7 5 13 13 N 1.46898 * 109.47337 * 295.16517 * 3 2 1 14 14 C 1.46905 * 110.99708 * 135.62376 * 13 3 2 15 15 C 1.52998 * 109.50632 * 54.71651 * 14 13 3 16 16 C 1.53116 * 109.50077 * 174.79551 * 14 13 3 17 17 C 1.53122 * 109.16207 * 177.63213 * 16 14 13 18 18 C 1.53035 * 109.27848 * 302.34717 * 17 16 14 19 19 N 1.46841 * 109.51541 * 59.17947 * 18 17 16 20 20 C 1.46898 * 111.00123 * 174.15479 * 19 18 17 21 21 C 1.46850 * 111.20110 * 298.24468 * 19 18 17 22 22 H 1.09000 * 109.47200 * 305.62317 * 1 2 3 23 23 H 1.08994 * 109.47623 * 65.63321 * 1 2 3 24 24 H 1.09007 * 109.47044 * 185.63160 * 1 2 3 25 25 H 1.08999 * 109.46945 * 240.00331 * 2 1 3 26 26 H 1.08999 * 109.47098 * 119.99891 * 2 1 3 27 27 H 0.96996 * 120.00119 * 179.97438 * 8 7 5 28 28 H 1.00899 * 111.00244 * 11.67462 * 13 3 2 29 29 H 1.08996 * 109.47013 * 174.35865 * 15 14 13 30 30 H 1.09002 * 109.46693 * 294.36138 * 15 14 13 31 31 H 1.09001 * 109.46923 * 54.35816 * 15 14 13 32 32 H 1.09002 * 109.52519 * 57.72561 * 16 14 13 33 33 H 1.09006 * 109.52357 * 297.54048 * 16 14 13 34 34 H 1.09003 * 109.50314 * 182.40473 * 17 16 14 35 35 H 1.09000 * 109.50128 * 62.28673 * 17 16 14 36 36 H 1.09002 * 109.46180 * 179.19441 * 18 17 16 37 37 H 1.09000 * 109.46099 * 299.16966 * 18 17 16 38 38 H 1.09002 * 109.47403 * 56.04793 * 20 19 18 39 39 H 1.09001 * 109.47346 * 176.04707 * 20 19 18 40 40 H 1.09005 * 109.47231 * 296.05027 * 20 19 18 41 41 H 1.08999 * 109.46856 * 301.73780 * 21 19 18 42 42 H 1.09004 * 109.45065 * 181.76433 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6076 1.9807 0.8436 5 6 3.5421 1.4442 0.1198 6 1 4.1453 1.8896 -0.6575 7 6 4.1466 0.8772 1.2218 8 7 5.4576 0.8783 1.3260 9 14 3.1033 0.1076 2.5665 10 1 2.8807 -1.3283 2.2596 11 1 3.8046 0.2322 3.8696 12 1 1.7952 0.8067 2.6395 13 7 1.6479 2.1005 -1.2535 14 6 1.1280 3.4507 -0.9990 15 6 2.1589 4.2535 -0.2031 16 6 0.8523 4.1519 -2.3320 17 6 0.2556 5.5353 -2.0582 18 6 -1.0205 5.3798 -1.2280 19 7 -0.7036 4.7045 0.0369 20 6 -1.8773 4.6615 0.9192 21 6 -0.1734 3.3556 -0.1995 22 1 -0.3633 0.5986 0.8353 23 1 -0.3634 0.4240 -0.9360 24 1 -0.3633 -1.0228 0.1009 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.8828 0.4798 2.1014 28 1 0.9756 1.5436 -1.7594 29 1 1.8172 5.2835 -0.1009 30 1 2.2795 3.8108 0.7856 31 1 3.1146 4.2381 -0.7271 32 1 0.1473 3.5602 -2.9159 33 1 1.7847 4.2605 -2.8861 34 1 0.0176 6.0225 -3.0038 35 1 0.9764 6.1400 -1.5079 36 1 -1.4401 6.3639 -1.0191 37 1 -1.7459 4.7864 -1.7846 38 1 -2.7055 4.1804 0.3990 39 1 -1.6352 4.0953 1.8186 40 1 -2.1622 5.6770 1.1947 41 1 -0.9029 2.7719 -0.7610 42 1 0.0222 2.8698 0.7564 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:26 Heat of formation + Delta-G solvation = -15.126160 kcal Electronic energy + Delta-G solvation = -19172.875214 eV Core-core repulsion = 16572.831130 eV Total energy + Delta-G solvation = -2600.044083 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.89243 -37.92748 -35.21857 -34.10797 -32.88065 -30.27350 -29.03997 -27.78237 -27.33356 -24.44274 -23.93458 -22.64321 -21.35616 -19.48664 -18.77753 -17.46457 -16.73409 -16.31045 -15.76328 -15.64515 -15.57857 -15.19776 -14.68815 -14.38370 -14.20548 -13.76170 -13.65298 -13.43080 -13.24079 -12.96462 -12.77075 -12.56795 -12.50581 -12.45041 -12.13623 -12.02004 -11.61951 -11.56509 -11.50396 -11.37526 -11.11855 -10.93619 -10.62945 -9.21659 -8.93516 -8.21609 -6.19905 1.26749 1.32773 1.41832 2.33463 2.99222 3.12240 3.49539 3.86375 3.97655 4.16380 4.20322 4.24660 4.30942 4.34907 4.40525 4.50471 4.57594 4.64168 4.70929 4.79308 4.84071 4.89836 4.97210 4.99763 5.02759 5.04944 5.08044 5.15085 5.20361 5.23552 5.40449 5.47197 5.55906 5.65598 5.77472 6.04700 6.19235 6.24163 6.69277 6.86564 6.98297 7.42932 8.96189 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027354 B = 0.008427 C = 0.007840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.373835 B = 3321.896861 C = 3570.624861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.198 3.802 4 H 0.010 0.990 5 C -0.479 4.479 6 H 0.032 0.968 7 C 0.004 3.996 8 N -0.955 5.955 9 Si 0.942 3.058 10 H -0.268 1.268 11 H -0.303 1.303 12 H -0.252 1.252 13 N -0.673 5.673 14 C 0.121 3.879 15 C -0.106 4.106 16 C -0.101 4.101 17 C -0.113 4.113 18 C 0.058 3.942 19 N -0.552 5.552 20 C 0.026 3.974 21 C 0.043 3.957 22 H 0.045 0.955 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.261 0.739 28 H 0.332 0.668 29 H 0.071 0.929 30 H 0.025 0.975 31 H 0.029 0.971 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.036 0.964 38 H 0.031 0.969 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.035 0.965 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.898 6.685 -4.266 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.185 4.185 3 C 0.089 3.911 4 H 0.028 0.972 5 C -0.518 4.518 6 H 0.050 0.950 7 C -0.191 4.191 8 N -0.597 5.597 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.231 1.231 12 H -0.176 1.176 13 N -0.304 5.304 14 C 0.029 3.971 15 C -0.164 4.164 16 C -0.139 4.139 17 C -0.151 4.151 18 C -0.070 4.070 19 N -0.277 5.277 20 C -0.122 4.122 21 C -0.087 4.087 22 H 0.064 0.936 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.152 0.848 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.053 0.947 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.763 7.120 -4.083 18.664 hybrid contribution -0.903 -1.395 0.921 1.900 sum -17.666 5.725 -3.162 18.838 Atomic orbital electron populations 1.21849 0.94567 1.02237 1.01654 1.22216 0.96221 0.99145 1.00882 1.19398 0.93382 0.90011 0.88317 0.97241 1.21330 0.91705 1.34479 1.04264 0.94961 1.25760 0.95702 0.97214 1.00432 1.70050 1.10522 1.48227 1.30880 0.85955 0.79478 0.79488 0.78035 1.19411 1.23089 1.17575 1.60643 1.44550 1.02951 1.22268 1.20936 0.91605 0.89542 0.95013 1.21558 0.97192 0.99325 0.98296 1.21540 1.00812 0.96419 0.95172 1.21641 0.96975 0.96267 1.00251 1.22160 0.96637 0.99262 0.88910 1.61864 1.31996 1.18027 1.15822 1.22380 0.90631 1.02797 0.96368 1.22801 0.96458 0.89850 0.99583 0.93591 0.91504 0.91377 0.91857 0.94432 0.92982 0.84840 0.91010 0.95560 0.95208 0.91671 0.92219 0.89171 0.91622 0.89188 0.94582 0.95089 0.92465 0.89863 0.94697 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 9.52 71.98 0.68 -3.78 16 2 C -0.15 -5.98 4.86 30.59 0.15 -5.83 16 3 C 0.20 9.06 0.72 44.17 0.03 9.09 16 4 H 0.01 0.48 3.96 -2.38 -0.01 0.47 16 5 C -0.48 -27.72 8.57 25.60 0.22 -27.50 16 6 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 7 C 0.00 0.27 5.45 84.66 0.46 0.73 16 8 N -0.95 -61.46 13.96 21.45 0.30 -61.16 16 9 Si 0.94 46.17 24.41 68.60 1.67 47.84 16 10 H -0.27 -12.46 6.83 99.48 0.68 -11.78 16 11 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 12 H -0.25 -11.46 6.53 99.48 0.65 -10.81 16 13 N -0.67 -26.59 5.92 -451.84 -2.68 -29.27 16 14 C 0.12 4.13 0.69 3.58 0.00 4.13 16 15 C -0.11 -4.24 7.24 71.98 0.52 -3.72 16 16 C -0.10 -2.81 5.09 30.67 0.16 -2.65 16 17 C -0.11 -2.51 5.74 30.65 0.18 -2.33 16 18 C 0.06 1.20 5.46 86.33 0.47 1.67 16 19 N -0.55 -14.34 4.30 -922.59 -3.96 -18.30 16 20 C 0.03 0.56 9.62 127.69 1.23 1.79 16 21 C 0.04 1.31 3.91 86.32 0.34 1.65 16 22 H 0.04 1.41 7.78 -2.39 -0.02 1.39 16 23 H 0.07 1.78 6.82 -2.39 -0.02 1.77 16 24 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 25 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.04 1.66 3.22 -2.39 -0.01 1.65 16 27 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 28 H 0.33 11.46 6.66 -89.69 -0.60 10.86 16 29 H 0.07 2.51 5.91 -2.39 -0.01 2.49 16 30 H 0.03 1.18 6.50 -2.39 -0.02 1.17 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.61 6.46 -2.39 -0.02 1.59 16 36 H 0.09 1.54 8.12 -2.39 -0.02 1.53 16 37 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.06 1.30 8.02 -2.39 -0.02 1.28 16 40 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.05 1.87 5.98 -2.38 -0.01 1.85 16 Total: -1.00 -67.09 303.12 0.07 -67.02 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.30 Total: 20.62 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 4.44 Total: -26.76 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -6.34 Total: -108.72 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.67 Total: 47.84 kcal Total: -67.09 0.07 -67.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.893 kcal (2) G-P(sol) polarization free energy of solvation -67.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds