Wall clock time and date at job start Thu Apr 9 2020 12:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47359 * 2 1 4 4 H 1.09006 * 109.46995 * 304.68143 * 3 2 1 5 5 C 1.50705 * 109.47130 * 184.68705 * 3 2 1 6 6 H 1.08009 * 119.99522 * 239.73002 * 5 3 2 7 7 C 1.37872 * 120.00045 * 59.73059 * 5 3 2 8 8 N 1.31515 * 120.00326 * 0.02562 * 7 5 3 9 9 Si 1.86809 * 119.99794 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.46931 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46943 * 119.99927 * 9 7 5 12 12 H 1.48499 * 109.46946 * 240.00204 * 9 7 5 13 13 N 1.46893 * 109.47050 * 64.68433 * 3 2 1 14 14 C 1.46957 * 110.99969 * 208.42707 * 13 3 2 15 15 C 1.53056 * 109.36705 * 176.81084 * 14 13 3 16 16 H 1.08995 * 109.48529 * 298.43542 * 15 14 13 17 17 C 1.52996 * 109.48980 * 178.37104 * 15 14 13 18 18 N 1.46961 * 109.35902 * 58.40369 * 15 14 13 19 19 C 1.46903 * 110.99640 * 176.81440 * 18 15 14 20 20 C 1.46953 * 110.88141 * 300.67517 * 18 15 14 21 21 C 1.46954 * 111.00158 * 84.63036 * 13 3 2 22 22 H 1.09008 * 109.50951 * 63.20927 * 21 13 3 23 23 C 1.52996 * 109.48904 * 303.15402 * 21 13 3 24 24 H 1.08996 * 109.47380 * 184.83423 * 1 2 3 25 25 H 1.08993 * 109.47318 * 304.84654 * 1 2 3 26 26 H 1.09003 * 109.46690 * 64.84058 * 1 2 3 27 27 H 1.09008 * 109.47362 * 239.99942 * 2 1 3 28 28 H 1.09001 * 109.47367 * 120.00067 * 2 1 3 29 29 H 0.96999 * 119.99851 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.49280 * 296.78207 * 14 13 3 31 31 H 1.08999 * 109.48816 * 56.82545 * 14 13 3 32 32 H 1.09000 * 109.47312 * 300.10608 * 17 15 14 33 33 H 1.08994 * 109.47265 * 60.11136 * 17 15 14 34 34 H 1.09006 * 109.46946 * 180.11033 * 17 15 14 35 35 H 1.08997 * 109.47295 * 179.84526 * 19 18 15 36 36 H 1.09004 * 109.47245 * 299.84685 * 19 18 15 37 37 H 1.09006 * 109.47104 * 59.84305 * 19 18 15 38 38 H 1.09003 * 109.48833 * 179.29077 * 20 18 15 39 39 H 1.09001 * 109.49664 * 299.34145 * 20 18 15 40 40 H 1.09001 * 109.47284 * 310.57649 * 23 21 13 41 41 H 1.09004 * 109.47120 * 70.56915 * 23 21 13 42 42 H 1.09005 * 109.47659 * 190.57026 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6098 1.9800 -0.8451 5 6 3.5426 1.4440 -0.1161 6 1 4.1437 1.8939 0.6603 7 6 4.1498 0.8712 -1.2134 8 7 3.4178 0.3238 -2.1590 9 14 6.0124 0.8724 -1.3569 10 1 6.5997 1.5445 -0.1701 11 1 6.5044 -0.5270 -1.4267 12 1 6.4135 1.6003 -2.5875 13 7 1.6449 2.1015 1.2519 14 6 1.4880 3.5497 1.0580 15 6 1.0002 4.1865 2.3615 16 1 0.0284 3.7709 2.6277 17 6 0.8747 5.6998 2.1746 18 7 1.9651 3.9031 3.4330 19 6 1.5700 4.5622 4.6851 20 6 2.1220 2.4549 3.6271 21 6 2.6097 1.8182 2.3235 22 1 3.5818 2.2336 2.0574 23 6 2.7352 0.3049 2.5104 24 1 -0.3634 -1.0239 0.0866 25 1 -0.3633 0.5871 0.8433 26 1 -0.3633 0.4369 -0.9302 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8451 -0.0789 -2.9311 30 1 2.4470 3.9851 0.7772 31 1 0.7598 3.7341 0.2681 32 1 1.8465 6.1148 1.9074 33 1 0.1590 5.9097 1.3798 34 1 0.5291 6.1532 3.1037 35 1 2.2996 4.3337 5.4619 36 1 1.5290 5.6405 4.5308 37 1 0.5880 4.2014 4.9914 38 1 2.8505 2.2706 4.4167 39 1 1.1630 2.0195 3.9082 40 1 1.7412 -0.1350 2.5912 41 1 3.2542 -0.1252 1.6537 42 1 3.2998 0.0965 3.4193 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:31 Heat of formation + Delta-G solvation = 20.348161 kcal Electronic energy + Delta-G solvation = -19222.794868 eV Core-core repulsion = 16624.289067 eV Total energy + Delta-G solvation = -2598.505801 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.22940 -36.24580 -32.76389 -32.43191 -31.19147 -29.21763 -27.61618 -25.82832 -24.45582 -23.39344 -22.48817 -20.49931 -19.24923 -18.95448 -16.34197 -15.45142 -14.91650 -14.79973 -14.51901 -14.13880 -13.70971 -13.26265 -13.01973 -12.33265 -12.22892 -12.04297 -11.84389 -11.75922 -11.47408 -11.25462 -11.20743 -11.13115 -10.99426 -10.77130 -10.61002 -10.33772 -10.08713 -9.92364 -9.67633 -9.33688 -9.28100 -8.78258 -8.22426 -7.96253 -7.01362 -5.95347 -4.06342 3.28066 3.37110 3.41145 4.26628 4.42948 4.98272 5.27851 5.30163 5.35610 5.51038 5.62266 5.70995 5.85447 5.91253 5.97723 6.01597 6.08010 6.15581 6.29876 6.39032 6.40255 6.46441 6.47283 6.56339 6.69490 6.76394 6.77250 7.08620 7.18076 7.19232 7.25742 7.43587 7.45353 7.54775 7.71321 7.85405 8.07748 8.20427 8.40562 8.59172 9.04311 9.60164 11.04623 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023936 B = 0.008590 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.491531 B = 3258.814743 C = 3541.059747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.216 3.784 4 H 0.029 0.971 5 C -0.539 4.539 6 H 0.066 0.934 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.533 5.533 14 C 0.069 3.931 15 C 0.083 3.917 16 H 0.041 0.959 17 C -0.144 4.144 18 N -0.539 5.539 19 C 0.024 3.976 20 C 0.062 3.938 21 C 0.093 3.907 22 H 0.060 0.940 23 C -0.143 4.143 24 H 0.023 0.977 25 H 0.047 0.953 26 H 0.033 0.967 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.259 0.741 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.019 0.981 38 H 0.066 0.934 39 H 0.031 0.969 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 4.991 9.311 11.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.110 3.890 4 H 0.047 0.953 5 C -0.578 4.578 6 H 0.084 0.916 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.257 5.257 14 C -0.060 4.060 15 C -0.025 4.025 16 H 0.059 0.941 17 C -0.202 4.202 18 N -0.264 5.264 19 C -0.124 4.124 20 C -0.067 4.067 21 C -0.016 4.016 22 H 0.078 0.922 23 C -0.200 4.200 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.037 0.963 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.187 4.893 9.125 11.168 hybrid contribution 1.008 0.012 -0.197 1.028 sum -3.179 4.905 8.928 10.671 Atomic orbital electron populations 1.21705 0.99425 0.98299 1.00122 1.22038 0.92014 0.99439 1.03097 1.19211 0.93241 0.91374 0.85195 0.95265 1.21891 0.92780 1.37342 1.05798 0.91607 1.24915 0.97641 0.95272 0.95689 1.69903 1.34601 1.38251 1.09648 0.86666 0.86491 0.77658 0.77989 1.19825 1.21070 1.21180 1.62616 1.46561 1.07554 1.09012 1.21979 0.99822 0.89861 0.94314 1.21716 0.93362 0.94978 0.92456 0.94148 1.21861 1.02127 0.95229 1.01016 1.62145 1.47513 1.10907 1.05817 1.22374 0.98393 0.99625 0.92046 1.22329 0.99379 0.86374 0.98578 1.21444 0.95585 0.95153 0.89408 0.92243 1.22121 1.01069 0.95543 1.01275 0.95798 0.93391 0.94793 0.89400 0.92497 0.93092 0.94215 0.91652 0.91951 0.92349 0.92997 0.92027 0.91489 0.96291 0.91598 0.95051 0.92908 0.89130 0.94792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.85 37.15 0.37 -2.48 16 2 C -0.13 -2.98 4.94 -26.73 -0.13 -3.11 16 3 C 0.22 5.23 1.65 -68.87 -0.11 5.11 16 4 H 0.03 0.80 7.70 -51.93 -0.40 0.40 16 5 C -0.54 -14.08 6.47 -34.44 -0.22 -14.30 16 6 H 0.07 1.75 5.22 -52.48 -0.27 1.48 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.89 -24.68 11.28 55.43 0.62 -24.06 16 9 Si 0.88 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.53 -11.19 3.80 -219.94 -0.84 -12.03 16 14 C 0.07 1.35 4.73 -3.76 -0.02 1.33 16 15 C 0.08 1.36 2.56 -67.65 -0.17 1.19 16 16 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 17 C -0.14 -1.93 8.86 37.16 0.33 -1.60 16 18 N -0.54 -8.75 4.78 -234.72 -1.12 -9.88 16 19 C 0.02 0.31 9.13 60.07 0.55 0.86 16 20 C 0.06 1.04 4.88 -3.77 -0.02 1.03 16 21 C 0.09 1.85 1.98 -67.66 -0.13 1.72 16 22 H 0.06 1.35 5.73 -51.92 -0.30 1.05 16 23 C -0.14 -2.73 7.39 37.16 0.27 -2.45 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.96 7.61 -51.93 -0.40 0.57 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 2.31 5.94 -51.92 -0.31 2.01 16 28 H 0.06 1.28 3.76 -51.93 -0.20 1.09 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.25 7.98 -51.93 -0.41 0.84 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.61 6.36 -51.93 -0.33 0.28 16 35 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 36 H 0.07 0.78 6.26 -51.93 -0.32 0.46 16 37 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.99 7.21 -51.93 -0.37 0.62 16 41 H 0.09 1.98 5.03 -51.93 -0.26 1.72 16 42 H 0.03 0.56 8.11 -51.93 -0.42 0.14 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -26.94 305.06 -8.50 -35.44 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.36 Total: 0.92 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 0.61 Total: -11.02 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -1.33 Total: -45.96 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.94 -8.50 -35.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.791 kcal (2) G-P(sol) polarization free energy of solvation -26.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds