Wall clock time and date at job start Thu Apr 9 2020 12:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47359 * 2 1 4 4 H 1.09006 * 109.46995 * 304.68143 * 3 2 1 5 5 C 1.50705 * 109.47130 * 184.68705 * 3 2 1 6 6 H 1.08009 * 119.99522 * 239.73002 * 5 3 2 7 7 C 1.37872 * 120.00045 * 59.73059 * 5 3 2 8 8 N 1.31515 * 120.00326 * 0.02562 * 7 5 3 9 9 Si 1.86809 * 119.99794 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.46931 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46943 * 119.99927 * 9 7 5 12 12 H 1.48499 * 109.46946 * 240.00204 * 9 7 5 13 13 N 1.46893 * 109.47050 * 64.68433 * 3 2 1 14 14 C 1.46957 * 110.99969 * 208.42707 * 13 3 2 15 15 C 1.53056 * 109.36705 * 176.81084 * 14 13 3 16 16 H 1.08995 * 109.48529 * 298.43542 * 15 14 13 17 17 C 1.52996 * 109.48980 * 178.37104 * 15 14 13 18 18 N 1.46961 * 109.35902 * 58.40369 * 15 14 13 19 19 C 1.46903 * 110.99640 * 176.81440 * 18 15 14 20 20 C 1.46953 * 110.88141 * 300.67517 * 18 15 14 21 21 C 1.46954 * 111.00158 * 84.63036 * 13 3 2 22 22 H 1.09008 * 109.50951 * 63.20927 * 21 13 3 23 23 C 1.52996 * 109.48904 * 303.15402 * 21 13 3 24 24 H 1.08996 * 109.47380 * 184.83423 * 1 2 3 25 25 H 1.08993 * 109.47318 * 304.84654 * 1 2 3 26 26 H 1.09003 * 109.46690 * 64.84058 * 1 2 3 27 27 H 1.09008 * 109.47362 * 239.99942 * 2 1 3 28 28 H 1.09001 * 109.47367 * 120.00067 * 2 1 3 29 29 H 0.96999 * 119.99851 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.49280 * 296.78207 * 14 13 3 31 31 H 1.08999 * 109.48816 * 56.82545 * 14 13 3 32 32 H 1.09000 * 109.47312 * 300.10608 * 17 15 14 33 33 H 1.08994 * 109.47265 * 60.11136 * 17 15 14 34 34 H 1.09006 * 109.46946 * 180.11033 * 17 15 14 35 35 H 1.08997 * 109.47295 * 179.84526 * 19 18 15 36 36 H 1.09004 * 109.47245 * 299.84685 * 19 18 15 37 37 H 1.09006 * 109.47104 * 59.84305 * 19 18 15 38 38 H 1.09003 * 109.48833 * 179.29077 * 20 18 15 39 39 H 1.09001 * 109.49664 * 299.34145 * 20 18 15 40 40 H 1.09001 * 109.47284 * 310.57649 * 23 21 13 41 41 H 1.09004 * 109.47120 * 70.56915 * 23 21 13 42 42 H 1.09005 * 109.47659 * 190.57026 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6098 1.9800 -0.8451 5 6 3.5426 1.4440 -0.1161 6 1 4.1437 1.8939 0.6603 7 6 4.1498 0.8712 -1.2134 8 7 3.4178 0.3238 -2.1590 9 14 6.0124 0.8724 -1.3569 10 1 6.5997 1.5445 -0.1701 11 1 6.5044 -0.5270 -1.4267 12 1 6.4135 1.6003 -2.5875 13 7 1.6449 2.1015 1.2519 14 6 1.4880 3.5497 1.0580 15 6 1.0002 4.1865 2.3615 16 1 0.0284 3.7709 2.6277 17 6 0.8747 5.6998 2.1746 18 7 1.9651 3.9031 3.4330 19 6 1.5700 4.5622 4.6851 20 6 2.1220 2.4549 3.6271 21 6 2.6097 1.8182 2.3235 22 1 3.5818 2.2336 2.0574 23 6 2.7352 0.3049 2.5104 24 1 -0.3634 -1.0239 0.0866 25 1 -0.3633 0.5871 0.8433 26 1 -0.3633 0.4369 -0.9302 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8451 -0.0789 -2.9311 30 1 2.4470 3.9851 0.7772 31 1 0.7598 3.7341 0.2681 32 1 1.8465 6.1148 1.9074 33 1 0.1590 5.9097 1.3798 34 1 0.5291 6.1532 3.1037 35 1 2.2996 4.3337 5.4619 36 1 1.5290 5.6405 4.5308 37 1 0.5880 4.2014 4.9914 38 1 2.8505 2.2706 4.4167 39 1 1.1630 2.0195 3.9082 40 1 1.7412 -0.1350 2.5912 41 1 3.2542 -0.1252 1.6537 42 1 3.2998 0.0965 3.4193 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:30 Heat of formation + Delta-G solvation = 3.185784 kcal Electronic energy + Delta-G solvation = -19223.539085 eV Core-core repulsion = 16624.289067 eV Total energy + Delta-G solvation = -2599.250018 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.74493 -37.80869 -34.59172 -33.88840 -33.02850 -30.64003 -29.20337 -27.44489 -25.86047 -25.07692 -24.04441 -22.05310 -20.98162 -20.54258 -18.25129 -17.06403 -16.53630 -16.33926 -15.96281 -15.51904 -15.34011 -15.00102 -14.51055 -13.88713 -13.77864 -13.62342 -13.28873 -13.10068 -13.00581 -12.82872 -12.73865 -12.70044 -12.56806 -12.44513 -12.25576 -11.98818 -11.63786 -11.56387 -11.46615 -11.19389 -11.04008 -10.65704 -10.21849 -9.20628 -8.82760 -8.00129 -6.18824 1.35898 1.39767 1.49195 2.42273 3.04458 3.19208 3.39202 3.99266 4.13101 4.19133 4.40232 4.49521 4.54174 4.64372 4.68856 4.71757 4.78197 4.81569 4.86873 4.89299 4.92048 4.97515 5.01715 5.03452 5.15720 5.17787 5.24295 5.37793 5.45160 5.49062 5.59903 5.63305 5.77283 5.88859 6.13744 6.18381 6.23919 6.30015 6.48998 6.76949 7.02555 7.50497 8.96393 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023936 B = 0.008590 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.491531 B = 3258.814743 C = 3541.059747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.224 3.776 4 H -0.010 1.010 5 C -0.541 4.541 6 H 0.058 0.942 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.286 1.286 13 N -0.528 5.528 14 C 0.069 3.931 15 C 0.091 3.909 16 H 0.041 0.959 17 C -0.137 4.137 18 N -0.555 5.555 19 C 0.025 3.975 20 C 0.070 3.930 21 C 0.093 3.907 22 H 0.027 0.973 23 C -0.135 4.135 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.024 0.976 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.259 0.741 30 H 0.011 0.989 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.027 0.973 38 H 0.084 0.916 39 H 0.035 0.965 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.582 5.616 11.516 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.117 3.883 4 H 0.008 0.992 5 C -0.579 4.579 6 H 0.076 0.924 7 C -0.179 4.179 8 N -0.552 5.552 9 Si 0.768 3.232 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.253 5.253 14 C -0.060 4.060 15 C -0.018 4.018 16 H 0.059 0.941 17 C -0.195 4.195 18 N -0.281 5.281 19 C -0.122 4.122 20 C -0.058 4.058 21 C -0.016 4.016 22 H 0.045 0.955 23 C -0.193 4.193 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.029 0.971 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.045 0.955 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.576 5.530 11.350 13.429 hybrid contribution 1.128 -0.153 -0.868 1.431 sum -3.448 5.377 10.482 12.275 Atomic orbital electron populations 1.21568 0.97171 0.99705 0.99931 1.21905 0.93985 0.98386 1.01873 1.18976 0.92019 0.91798 0.85510 0.99177 1.22085 0.93924 1.36536 1.05401 0.92357 1.25572 1.01335 0.95318 0.95637 1.70031 1.35962 1.39122 1.10080 0.85768 0.82097 0.77667 0.77684 1.19657 1.20550 1.21202 1.62622 1.46468 1.08360 1.07809 1.22026 0.98350 0.89018 0.96605 1.21623 0.92970 0.96541 0.90643 0.94128 1.21814 1.02085 0.92944 1.02656 1.62131 1.47989 1.10519 1.07428 1.22442 0.99137 1.00109 0.90512 1.22194 0.99888 0.86905 0.96794 1.21464 0.93796 0.95845 0.90536 0.95500 1.21983 1.01283 0.94782 1.01205 0.93674 0.92688 0.95650 0.92592 0.91674 0.93190 0.97062 0.92149 0.92787 0.91452 0.90543 0.90789 0.90070 0.95459 0.89752 0.94642 0.92434 0.92280 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.85 71.98 0.71 -4.44 16 2 C -0.12 -5.86 4.94 30.59 0.15 -5.71 16 3 C 0.22 11.20 1.65 44.17 0.07 11.28 16 4 H -0.01 -0.56 7.70 -2.38 -0.02 -0.57 16 5 C -0.54 -29.11 6.47 25.60 0.17 -28.95 16 6 H 0.06 3.20 5.22 -2.91 -0.02 3.18 16 7 C 0.02 1.14 5.29 84.65 0.45 1.59 16 8 N -0.91 -52.43 11.28 21.45 0.24 -52.18 16 9 Si 0.94 44.05 29.54 68.60 2.03 46.07 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 13 N -0.53 -22.39 3.80 -849.76 -3.23 -25.62 16 14 C 0.07 2.72 4.73 86.31 0.41 3.13 16 15 C 0.09 2.81 2.56 44.92 0.12 2.93 16 16 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 17 C -0.14 -3.36 8.86 71.98 0.64 -2.72 16 18 N -0.56 -16.75 4.78 -896.52 -4.29 -21.04 16 19 C 0.03 0.56 9.13 127.69 1.17 1.73 16 20 C 0.07 2.23 4.88 86.31 0.42 2.65 16 21 C 0.09 3.64 1.98 44.92 0.09 3.73 16 22 H 0.03 1.25 5.73 -2.38 -0.01 1.23 16 23 C -0.14 -5.04 7.39 71.98 0.53 -4.51 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 2.14 7.61 -2.39 -0.02 2.13 16 26 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 3.04 5.94 -2.38 -0.01 3.02 16 28 H 0.06 2.96 3.76 -2.39 -0.01 2.95 16 29 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 2.38 7.98 -2.39 -0.02 2.36 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.51 6.36 -2.38 -0.02 1.50 16 35 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 36 H 0.08 1.57 6.26 -2.39 -0.01 1.55 16 37 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.08 2.36 8.13 -2.39 -0.02 2.35 16 39 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 2.07 7.21 -2.39 -0.02 2.06 16 41 H 0.06 2.59 5.03 -2.38 -0.01 2.58 16 42 H 0.06 1.93 8.11 -2.38 -0.02 1.91 16 Total: -1.00 -59.21 305.06 0.64 -58.57 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.97 Total: 13.50 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 4.92 Total: -19.31 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -7.27 Total: -98.84 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -59.21 0.64 -58.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.757 kcal (2) G-P(sol) polarization free energy of solvation -59.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds