Wall clock time and date at job start Thu Apr 9 2020 12:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47008 * 2 1 4 4 C 1.53000 * 109.47489 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47495 * 177.44613 * 4 3 2 6 6 C 1.46895 * 110.99675 * 64.85044 * 5 4 3 7 7 C 1.50700 * 109.47305 * 66.04771 * 6 5 4 8 8 H 1.07992 * 119.99929 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99867 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99881 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47046 * 179.97438 * 11 9 7 13 13 H 1.48499 * 109.47144 * 300.00132 * 11 9 7 14 14 H 1.48502 * 109.46966 * 60.00161 * 11 9 7 15 15 C 1.46895 * 110.99818 * 300.89658 * 5 4 3 16 16 H 1.08999 * 110.29151 * 67.68086 * 15 5 4 17 17 C 1.54261 * 110.32498 * 189.80641 * 15 5 4 18 18 C 1.54374 * 105.06313 * 118.89590 * 17 15 5 19 19 N 1.48561 * 104.59421 * 23.85500 * 18 17 15 20 20 C 1.46907 * 110.99621 * 200.96159 * 19 18 17 21 21 C 1.48558 * 104.21953 * 320.51522 * 19 18 17 22 22 H 1.09007 * 109.47221 * 300.00043 * 1 2 3 23 23 H 1.09003 * 109.46943 * 60.00277 * 1 2 3 24 24 H 1.09004 * 109.46919 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47432 * 239.99698 * 2 1 3 26 26 H 1.09002 * 109.47403 * 119.99457 * 2 1 3 27 27 H 1.09007 * 109.47165 * 59.99923 * 3 2 1 28 28 H 1.09003 * 109.47316 * 300.00138 * 3 2 1 29 29 H 1.09005 * 109.46904 * 57.44167 * 4 3 2 30 30 H 1.09006 * 109.47018 * 297.44812 * 4 3 2 31 31 H 1.09004 * 109.47360 * 306.04162 * 6 5 4 32 32 H 1.09005 * 109.46871 * 186.04935 * 6 5 4 33 33 H 0.97003 * 120.00231 * 0.02562 * 10 9 7 34 34 H 1.09003 * 110.32388 * 237.79883 * 17 15 5 35 35 H 1.09005 * 110.32125 * 359.89489 * 17 15 5 36 36 H 1.09001 * 110.41414 * 142.63409 * 18 17 15 37 37 H 1.09004 * 110.40793 * 264.95692 * 18 17 15 38 38 H 1.08999 * 109.47342 * 60.12780 * 20 19 18 39 39 H 1.08998 * 109.46840 * 180.12316 * 20 19 18 40 40 H 1.09002 * 109.46924 * 300.12287 * 20 19 18 41 41 H 1.09000 * 110.41417 * 280.70655 * 21 19 18 42 42 H 1.09002 * 110.40804 * 158.26479 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 7 4.0596 2.8263 -0.0611 6 6 3.6850 3.5716 1.1481 7 6 4.4024 2.9902 2.3390 8 1 5.0695 2.1507 2.2106 9 6 4.2071 3.5301 3.5926 10 7 3.3951 4.5527 3.7489 11 14 5.0969 2.8098 5.0687 12 1 4.7190 3.5640 6.2908 13 1 4.7158 1.3836 5.2290 14 1 6.5637 2.9098 4.8597 15 6 3.5716 3.5039 -1.2696 16 1 2.4926 3.6473 -1.2130 17 6 4.2837 4.8607 -1.4476 18 6 5.0236 4.7514 -2.7980 19 7 4.2758 3.7120 -3.5515 20 6 5.1051 3.1369 -4.6190 21 6 3.9412 2.6890 -2.5276 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.9337 0.8895 -0.8653 30 1 3.9329 0.9691 0.9129 31 1 2.6083 3.4984 1.3011 32 1 3.9649 4.6185 1.0308 33 1 2.9333 4.9270 2.9823 34 1 3.5540 5.6699 -1.4799 35 1 4.9940 5.0247 -0.6371 36 1 4.9899 5.7032 -3.3281 37 1 6.0566 4.4407 -2.6415 38 1 5.9928 2.6789 -4.1827 39 1 4.5328 2.3805 -5.1560 40 1 5.4050 3.9245 -5.3103 41 1 4.8042 2.0535 -2.3289 42 1 3.0925 2.0879 -2.8541 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255435264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:40 Heat of formation + Delta-G solvation = -6.357051 kcal Electronic energy + Delta-G solvation = -18384.301776 eV Core-core repulsion = 15784.637950 eV Total energy + Delta-G solvation = -2599.663826 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.22743 -36.66530 -34.04586 -32.72692 -30.96593 -28.52173 -28.04078 -25.76190 -24.85051 -23.23775 -21.57215 -21.03543 -20.69613 -18.72419 -16.56762 -16.06947 -15.84874 -14.88487 -14.38890 -14.16063 -13.97068 -13.65992 -13.46396 -13.24471 -12.73253 -12.55802 -12.11854 -11.92960 -11.49211 -11.32009 -11.29261 -11.07817 -11.00620 -10.92758 -10.75498 -10.63189 -10.52389 -10.37514 -10.10869 -9.98520 -9.82351 -8.63410 -8.39861 -8.34035 -7.24217 -6.34352 -4.02689 3.44772 3.46903 3.65364 4.15242 4.54132 4.91240 4.94303 5.00772 5.24704 5.26848 5.38875 5.41374 5.45383 5.49433 5.54391 5.62891 5.76099 5.83163 5.86902 5.88903 6.02858 6.04581 6.12198 6.14429 6.24366 6.26274 6.37640 6.43130 6.47243 6.54920 6.67498 6.86283 6.94023 7.09067 7.13082 7.19662 7.86017 8.03022 8.36470 8.61143 8.89782 9.67332 11.04647 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017340 B = 0.007839 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.419020 B = 3571.232256 C = 4698.753476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.156 4.156 4 C 0.065 3.935 5 N -0.523 5.523 6 C 0.180 3.820 7 C -0.585 4.585 8 H 0.055 0.945 9 C 0.014 3.986 10 N -0.915 5.915 11 Si 1.070 2.930 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.288 1.288 15 C 0.078 3.922 16 H 0.042 0.958 17 C -0.117 4.117 18 C 0.037 3.963 19 N -0.520 5.520 20 C 0.015 3.985 21 C 0.042 3.958 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.082 0.918 31 H -0.014 1.014 32 H 0.021 0.979 33 H 0.266 0.734 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.027 0.973 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.430 -4.936 -12.298 13.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.195 4.195 4 C -0.064 4.064 5 N -0.246 5.246 6 C 0.054 3.946 7 C -0.624 4.624 8 H 0.073 0.927 9 C -0.189 4.189 10 N -0.552 5.552 11 Si 0.898 3.102 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.215 1.215 15 C -0.032 4.032 16 H 0.060 0.940 17 C -0.156 4.156 18 C -0.091 4.091 19 N -0.244 5.244 20 C -0.134 4.134 21 C -0.086 4.086 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.004 0.996 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.171 -4.559 -10.951 11.863 hybrid contribution -0.388 -0.463 -1.321 1.453 sum -0.559 -5.022 -12.272 13.271 Atomic orbital electron populations 1.21770 0.96512 1.00858 1.01631 1.21424 0.95292 0.97396 1.01456 1.22249 0.98823 0.96413 1.01968 1.22071 0.91590 0.91105 1.01615 1.62436 1.58201 1.01911 1.02083 1.19863 0.94046 0.93736 0.86911 1.21949 1.29033 1.18642 0.92744 0.92678 1.25789 0.96926 0.95498 1.00703 1.70794 1.27155 1.22838 1.34377 0.83527 0.75647 0.75441 0.75572 1.20884 1.21537 1.21460 1.22262 0.96830 0.93530 0.90531 0.93975 1.22373 0.99833 0.96797 0.96571 1.23072 0.95972 0.95766 0.94267 1.65359 1.38567 1.10618 1.09835 1.22472 0.95871 0.99663 0.95370 1.23177 1.00436 0.94090 0.90923 0.92771 0.93204 0.93291 0.92727 0.92009 0.91177 0.92891 0.92918 0.89941 0.99644 0.96114 0.92345 0.91775 0.89659 0.90728 0.93750 0.95391 0.91635 0.91630 0.92741 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.88 16 3 C -0.16 -2.74 4.56 -26.73 -0.12 -2.86 16 4 C 0.06 1.24 4.81 -3.83 -0.02 1.22 16 5 N -0.52 -11.07 4.47 -226.43 -1.01 -12.09 16 6 C 0.18 4.55 3.66 -4.98 -0.02 4.53 16 7 C -0.59 -16.35 8.45 -34.44 -0.29 -16.64 16 8 H 0.05 1.55 7.13 -52.49 -0.37 1.18 16 9 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 10 N -0.91 -27.75 13.65 55.43 0.76 -26.99 16 11 Si 1.07 25.31 29.90 -169.99 -5.08 20.23 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.08 1.43 2.10 -66.33 -0.14 1.29 16 16 H 0.04 0.81 6.72 -51.93 -0.35 0.46 16 17 C -0.12 -2.04 6.02 -25.35 -0.15 -2.19 16 18 C 0.04 0.55 6.49 -2.18 -0.01 0.54 16 19 N -0.52 -7.63 5.66 -238.23 -1.35 -8.98 16 20 C 0.02 0.18 9.53 60.07 0.57 0.75 16 21 C 0.04 0.66 4.88 -2.18 -0.01 0.65 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 1.45 6.52 -51.93 -0.34 1.11 16 28 H 0.05 0.90 6.43 -51.93 -0.33 0.57 16 29 H 0.05 0.90 6.63 -51.93 -0.34 0.55 16 30 H 0.08 1.76 6.74 -51.93 -0.35 1.41 16 31 H -0.01 -0.37 6.09 -51.93 -0.32 -0.69 16 32 H 0.02 0.56 6.40 -51.93 -0.33 0.23 16 33 H 0.27 8.07 7.22 -40.82 -0.29 7.77 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.66 6.93 -51.93 -0.36 1.30 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.04 0.66 7.98 -51.93 -0.41 0.24 16 38 H 0.03 0.33 7.97 -51.93 -0.41 -0.08 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.89 7.13 -51.93 -0.37 0.52 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 318.12 15.07 4.79 4.79 Total: -1.00 -29.50 318.12 -9.59 -39.09 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.61 Total: -0.16 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -0.08 Total: -15.90 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -1.60 Total: -48.06 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.50 -9.59 -39.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255435264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.731 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds