Wall clock time and date at job start Thu Apr 9 2020 12:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47071 * 2 1 4 4 N 1.46903 * 109.47008 * 178.96471 * 3 2 1 5 5 C 1.46902 * 111.00019 * 291.34182 * 4 3 2 6 6 C 1.50698 * 109.47268 * 297.04318 * 5 4 3 7 7 H 1.08002 * 120.00254 * 4.50989 * 6 5 4 8 8 C 1.37871 * 120.00331 * 184.50701 * 6 5 4 9 9 N 1.31509 * 120.00321 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 119.99660 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47035 * 89.99936 * 10 8 6 12 12 H 1.48501 * 109.46893 * 209.99847 * 10 8 6 13 13 H 1.48499 * 109.47034 * 329.99907 * 10 8 6 14 14 C 1.46903 * 110.99857 * 167.39081 * 4 3 2 15 15 H 1.08998 * 109.50795 * 60.08010 * 14 4 3 16 16 C 1.53119 * 109.53525 * 180.17619 * 14 4 3 17 17 C 1.53111 * 109.16139 * 177.61108 * 16 14 4 18 18 C 1.53035 * 109.28120 * 302.34698 * 17 16 14 19 19 N 1.46847 * 109.52282 * 59.17896 * 18 17 16 20 20 C 1.46906 * 110.99956 * 174.16145 * 19 18 17 21 21 C 1.46846 * 111.19817 * 298.25759 * 19 18 17 22 22 H 1.08997 * 109.47231 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46997 * 299.99714 * 1 2 3 24 24 H 1.08996 * 109.47117 * 60.00189 * 1 2 3 25 25 H 1.09001 * 109.46964 * 239.99733 * 2 1 3 26 26 H 1.09004 * 109.46914 * 120.00052 * 2 1 3 27 27 H 1.08997 * 109.47055 * 58.96785 * 3 2 1 28 28 H 1.09001 * 109.47642 * 298.96143 * 3 2 1 29 29 H 1.09004 * 109.47017 * 57.04227 * 5 4 3 30 30 H 1.08996 * 109.46988 * 177.04431 * 5 4 3 31 31 H 0.97006 * 120.00341 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.52271 * 297.52282 * 16 14 4 33 33 H 1.09003 * 109.52153 * 57.64479 * 16 14 4 34 34 H 1.09002 * 109.50393 * 62.28998 * 17 16 14 35 35 H 1.09006 * 109.50509 * 182.36617 * 17 16 14 36 36 H 1.08998 * 109.46266 * 299.15841 * 18 17 16 37 37 H 1.09006 * 109.46420 * 179.19633 * 18 17 16 38 38 H 1.09000 * 109.46781 * 184.21194 * 20 19 18 39 39 H 1.08993 * 109.46677 * 64.20867 * 20 19 18 40 40 H 1.08999 * 109.46486 * 304.20711 * 20 19 18 41 41 H 1.08997 * 109.46485 * 181.75534 * 21 19 18 42 42 H 1.09004 * 109.46183 * 301.72926 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5088 1.4425 0.0250 5 6 4.0134 0.9511 1.3142 6 6 3.5715 1.8815 2.4142 7 1 2.9155 2.7097 2.1901 8 6 4.0047 1.6756 3.7068 9 7 3.6186 2.4872 4.6669 10 14 5.1399 0.2436 4.0945 11 1 6.5524 0.6798 3.9546 12 1 4.8992 -0.2162 5.4859 13 1 4.8703 -0.8712 3.1511 14 6 4.0404 2.7791 -0.2734 15 1 3.6796 3.4888 0.4710 16 6 5.5708 2.7401 -0.2429 17 6 6.1162 4.1219 -0.6133 18 6 5.5894 4.5196 -1.9940 19 7 4.1213 4.5432 -1.9710 20 6 3.5830 5.0544 -3.2387 21 6 3.5737 3.2157 -1.6640 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6616 1.9616 0.8806 28 1 1.6920 1.9510 -0.8991 29 1 3.6185 -0.0473 1.5022 30 1 5.1023 0.9120 1.2870 31 1 3.9237 2.3426 5.5763 32 1 5.9084 2.4714 0.7580 33 1 5.9306 2.0014 -0.9591 34 1 5.7881 4.8528 0.1258 35 1 7.2056 4.0896 -0.6344 36 1 5.9295 3.7960 -2.7348 37 1 5.9645 5.5094 -2.2546 38 1 2.4981 5.1318 -3.1678 39 1 3.8467 4.3722 -4.0467 40 1 4.0050 6.0387 -3.4418 41 1 2.4847 3.2583 -1.6848 42 1 3.9232 2.4981 -2.4063 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255487001.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:46 Heat of formation + Delta-G solvation = -0.743532 kcal Electronic energy + Delta-G solvation = -18661.039845 eV Core-core repulsion = 16061.619439 eV Total energy + Delta-G solvation = -2599.420406 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.07889 -36.60156 -33.36937 -32.54621 -31.78235 -29.49513 -27.35598 -26.33546 -24.62155 -22.87594 -22.09880 -21.07982 -19.63840 -18.87271 -16.75265 -15.91233 -15.02695 -14.62929 -14.47646 -14.40146 -14.00883 -13.77492 -13.26895 -13.02979 -12.70996 -12.41378 -12.25363 -12.05990 -11.78330 -11.44747 -11.23430 -11.15762 -11.01418 -10.77560 -10.50046 -10.39024 -10.31209 -10.10397 -9.87688 -9.68984 -9.59167 -9.29777 -8.54760 -8.08651 -7.12462 -6.06825 -4.05318 3.28140 3.36354 3.40092 4.10728 4.41831 4.90549 5.18882 5.25408 5.27800 5.36255 5.49596 5.58208 5.61324 5.65830 5.72616 5.78153 5.90449 5.93510 5.98398 6.06804 6.09519 6.22012 6.27280 6.34175 6.42094 6.44452 6.56506 6.60286 6.83279 6.85872 6.94653 7.00666 7.04033 7.18713 7.31826 7.33745 7.62741 8.11886 8.20899 8.49382 8.96947 9.56426 11.06261 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018423 B = 0.009002 C = 0.006799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.482744 B = 3109.528138 C = 4116.964180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.055 3.945 4 N -0.534 5.534 5 C 0.152 3.848 6 C -0.543 4.543 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.899 5.899 10 Si 0.874 3.126 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.265 1.265 14 C 0.098 3.902 15 H 0.061 0.939 16 C -0.111 4.111 17 C -0.116 4.116 18 C 0.059 3.941 19 N -0.543 5.543 20 C 0.029 3.971 21 C 0.063 3.937 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.029 0.971 30 H 0.027 0.973 31 H 0.262 0.738 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.028 0.972 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.020 0.980 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.630 0.642 -13.201 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.073 4.073 4 N -0.257 5.257 5 C 0.025 3.975 6 C -0.582 4.582 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.538 5.538 10 Si 0.701 3.299 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.189 1.189 14 C -0.011 4.011 15 H 0.079 0.921 16 C -0.148 4.148 17 C -0.154 4.154 18 C -0.069 4.069 19 N -0.268 5.268 20 C -0.120 4.120 21 C -0.065 4.065 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.666 0.666 -13.008 13.042 hybrid contribution 0.543 -0.669 0.428 0.962 sum 1.210 -0.003 -12.580 12.638 Atomic orbital electron populations 1.21719 0.96687 1.00753 1.01360 1.21453 0.94315 0.97649 1.01988 1.22040 0.88952 0.96179 1.00130 1.62446 1.07106 1.22685 1.33475 1.20228 0.95497 0.95993 0.85779 1.21648 1.30766 1.13609 0.92183 0.90725 1.24937 0.95867 0.95827 0.96329 1.69927 1.45202 1.37616 1.01029 0.86877 0.81569 0.83728 0.77732 1.20243 1.21382 1.18907 1.21313 0.94269 0.91235 0.94299 0.92084 1.21593 0.95354 0.95585 1.02311 1.21571 0.99134 0.98329 0.96357 1.22082 0.87441 0.99955 0.97426 1.61837 1.07025 1.25961 1.32000 1.22309 1.00557 0.99365 0.89762 1.22212 0.99175 0.87648 0.97467 0.93388 0.92708 0.93474 0.92583 0.91538 0.93203 0.92835 0.95338 0.95519 0.92792 0.90527 0.92713 0.90989 0.91932 0.95369 0.91434 0.91608 0.96135 0.91754 0.91131 0.94835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.12 -2.01 5.94 -26.73 -0.16 -2.17 16 3 C 0.06 1.06 4.63 -3.82 -0.02 1.04 16 4 N -0.53 -11.01 4.56 -227.98 -1.04 -12.05 16 5 C 0.15 3.59 3.57 -4.98 -0.02 3.57 16 6 C -0.54 -14.89 8.07 -34.44 -0.28 -15.17 16 7 H 0.07 2.25 6.12 -52.49 -0.32 1.93 16 8 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 9 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 10 Si 0.87 21.38 27.38 -169.99 -4.65 16.73 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.26 -6.25 6.67 56.52 0.38 -5.87 16 14 C 0.10 1.91 1.74 -67.63 -0.12 1.80 16 15 H 0.06 1.42 6.75 -51.93 -0.35 1.07 16 16 C -0.11 -2.03 4.84 -26.61 -0.13 -2.16 16 17 C -0.12 -1.80 6.09 -26.66 -0.16 -1.96 16 18 C 0.06 0.83 5.46 -3.84 -0.02 0.81 16 19 N -0.54 -8.29 4.91 -242.96 -1.19 -9.49 16 20 C 0.03 0.35 9.59 60.07 0.58 0.92 16 21 C 0.06 1.04 4.53 -3.83 -0.02 1.03 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 1.28 6.54 -51.93 -0.34 0.94 16 27 H 0.05 1.11 6.35 -51.93 -0.33 0.78 16 28 H 0.05 0.93 5.75 -51.93 -0.30 0.63 16 29 H 0.03 0.69 5.80 -51.93 -0.30 0.39 16 30 H 0.03 0.64 5.42 -51.93 -0.28 0.36 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.08 1.59 6.48 -51.93 -0.34 1.25 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 41 H 0.07 1.16 6.18 -51.93 -0.32 0.84 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 310.99 15.07 4.69 4.69 Total: -1.00 -29.17 310.99 -9.03 -38.20 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.53 Total: 0.57 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -0.07 Total: -12.10 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -1.46 Total: -48.08 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.65 Total: 16.73 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.17 -9.03 -38.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255487001.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.458 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds