Wall clock time and date at job start Thu Apr 9 2020 12:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47071 * 2 1 4 4 N 1.46903 * 109.47008 * 178.96471 * 3 2 1 5 5 C 1.46902 * 111.00019 * 291.34182 * 4 3 2 6 6 C 1.50698 * 109.47268 * 297.04318 * 5 4 3 7 7 H 1.08002 * 120.00254 * 4.50989 * 6 5 4 8 8 C 1.37871 * 120.00331 * 184.50701 * 6 5 4 9 9 N 1.31509 * 120.00321 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 119.99660 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47035 * 89.99936 * 10 8 6 12 12 H 1.48501 * 109.46893 * 209.99847 * 10 8 6 13 13 H 1.48499 * 109.47034 * 329.99907 * 10 8 6 14 14 C 1.46903 * 110.99857 * 167.39081 * 4 3 2 15 15 H 1.08998 * 109.50795 * 60.08010 * 14 4 3 16 16 C 1.53119 * 109.53525 * 180.17619 * 14 4 3 17 17 C 1.53111 * 109.16139 * 177.61108 * 16 14 4 18 18 C 1.53035 * 109.28120 * 302.34698 * 17 16 14 19 19 N 1.46847 * 109.52282 * 59.17896 * 18 17 16 20 20 C 1.46906 * 110.99956 * 174.16145 * 19 18 17 21 21 C 1.46846 * 111.19817 * 298.25759 * 19 18 17 22 22 H 1.08997 * 109.47231 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46997 * 299.99714 * 1 2 3 24 24 H 1.08996 * 109.47117 * 60.00189 * 1 2 3 25 25 H 1.09001 * 109.46964 * 239.99733 * 2 1 3 26 26 H 1.09004 * 109.46914 * 120.00052 * 2 1 3 27 27 H 1.08997 * 109.47055 * 58.96785 * 3 2 1 28 28 H 1.09001 * 109.47642 * 298.96143 * 3 2 1 29 29 H 1.09004 * 109.47017 * 57.04227 * 5 4 3 30 30 H 1.08996 * 109.46988 * 177.04431 * 5 4 3 31 31 H 0.97006 * 120.00341 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.52271 * 297.52282 * 16 14 4 33 33 H 1.09003 * 109.52153 * 57.64479 * 16 14 4 34 34 H 1.09002 * 109.50393 * 62.28998 * 17 16 14 35 35 H 1.09006 * 109.50509 * 182.36617 * 17 16 14 36 36 H 1.08998 * 109.46266 * 299.15841 * 18 17 16 37 37 H 1.09006 * 109.46420 * 179.19633 * 18 17 16 38 38 H 1.09000 * 109.46781 * 184.21194 * 20 19 18 39 39 H 1.08993 * 109.46677 * 64.20867 * 20 19 18 40 40 H 1.08999 * 109.46486 * 304.20711 * 20 19 18 41 41 H 1.08997 * 109.46485 * 181.75534 * 21 19 18 42 42 H 1.09004 * 109.46183 * 301.72926 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5088 1.4425 0.0250 5 6 4.0134 0.9511 1.3142 6 6 3.5715 1.8815 2.4142 7 1 2.9155 2.7097 2.1901 8 6 4.0047 1.6756 3.7068 9 7 3.6186 2.4872 4.6669 10 14 5.1399 0.2436 4.0945 11 1 6.5524 0.6798 3.9546 12 1 4.8992 -0.2162 5.4859 13 1 4.8703 -0.8712 3.1511 14 6 4.0404 2.7791 -0.2734 15 1 3.6796 3.4888 0.4710 16 6 5.5708 2.7401 -0.2429 17 6 6.1162 4.1219 -0.6133 18 6 5.5894 4.5196 -1.9940 19 7 4.1213 4.5432 -1.9710 20 6 3.5830 5.0544 -3.2387 21 6 3.5737 3.2157 -1.6640 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6616 1.9616 0.8806 28 1 1.6920 1.9510 -0.8991 29 1 3.6185 -0.0473 1.5022 30 1 5.1023 0.9120 1.2870 31 1 3.9237 2.3426 5.5763 32 1 5.9084 2.4714 0.7580 33 1 5.9306 2.0014 -0.9591 34 1 5.7881 4.8528 0.1258 35 1 7.2056 4.0896 -0.6344 36 1 5.9295 3.7960 -2.7348 37 1 5.9645 5.5094 -2.2546 38 1 2.4981 5.1318 -3.1678 39 1 3.8467 4.3722 -4.0467 40 1 4.0050 6.0387 -3.4418 41 1 2.4847 3.2583 -1.6848 42 1 3.9232 2.4981 -2.4063 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255487001.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:45 Heat of formation + Delta-G solvation = -21.243319 kcal Electronic energy + Delta-G solvation = -18661.928783 eV Core-core repulsion = 16061.619439 eV Total energy + Delta-G solvation = -2600.309343 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.51807 -38.08691 -34.86809 -34.48315 -33.19487 -31.13531 -29.00970 -27.60000 -26.16031 -24.48637 -23.53568 -22.43568 -21.17884 -20.54143 -18.79725 -17.33092 -16.60430 -16.31168 -16.00478 -15.75030 -15.42672 -15.21583 -14.73549 -14.63165 -14.19807 -14.00776 -13.61281 -13.35627 -13.11123 -13.06043 -12.83244 -12.58421 -12.43637 -12.26173 -12.19721 -11.95107 -11.80872 -11.73153 -11.64906 -11.34576 -11.23182 -10.89860 -10.74291 -9.22470 -8.95586 -8.29509 -6.32618 1.33039 1.34523 1.46316 2.33366 2.88229 3.05926 3.43093 3.83678 4.02516 4.11855 4.19140 4.24227 4.37249 4.47030 4.52500 4.59977 4.62689 4.67927 4.72852 4.77739 4.83306 4.90670 4.95154 5.00775 5.02979 5.07038 5.11548 5.13417 5.22091 5.27521 5.32935 5.40451 5.48088 5.50999 5.60854 6.08771 6.14754 6.22599 6.39362 6.52723 6.73481 7.32872 8.87209 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018423 B = 0.009002 C = 0.006799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.482744 B = 3109.528138 C = 4116.964180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C 0.057 3.943 4 N -0.525 5.525 5 C 0.162 3.838 6 C -0.536 4.536 7 H 0.030 0.970 8 C 0.011 3.989 9 N -0.949 5.949 10 Si 0.942 3.058 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.246 1.246 14 C 0.099 3.901 15 H 0.011 0.989 16 C -0.108 4.108 17 C -0.112 4.112 18 C 0.062 3.938 19 N -0.566 5.566 20 C 0.029 3.971 21 C 0.077 3.923 22 H 0.068 0.932 23 H 0.038 0.962 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.008 0.992 28 H 0.077 0.923 29 H 0.029 0.971 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.033 0.967 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -0.493 -15.822 15.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.071 4.071 4 N -0.248 5.248 5 C 0.034 3.966 6 C -0.575 4.575 7 H 0.048 0.952 8 C -0.186 4.186 9 N -0.590 5.590 10 Si 0.765 3.235 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.170 1.170 14 C -0.011 4.011 15 H 0.029 0.971 16 C -0.146 4.146 17 C -0.151 4.151 18 C -0.065 4.065 19 N -0.291 5.291 20 C -0.118 4.118 21 C -0.051 4.051 22 H 0.087 0.913 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.061 0.939 27 H 0.026 0.974 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.590 -0.465 -15.662 15.749 hybrid contribution 0.189 -0.205 1.211 1.243 sum 1.779 -0.669 -14.450 14.575 Atomic orbital electron populations 1.21678 0.94528 1.02226 1.01540 1.21426 0.96238 0.95692 1.01605 1.22094 0.88033 0.97674 0.99266 1.62523 1.07940 1.23264 1.31104 1.20043 0.95594 0.94988 0.85925 1.21806 1.29346 1.12755 0.93579 0.95211 1.25856 0.97765 0.98893 0.96108 1.70085 1.47260 1.40047 1.01580 0.85791 0.79472 0.80407 0.77821 1.19160 1.21065 1.16969 1.21324 0.95280 0.89362 0.95093 0.97102 1.21558 0.94331 0.97839 1.00901 1.21558 1.00624 0.95813 0.97078 1.22096 0.86641 1.01608 0.96169 1.61807 1.08011 1.24927 1.34362 1.22368 1.00743 1.00312 0.88391 1.21972 0.99068 0.88898 0.95191 0.91268 0.94315 0.91536 0.90741 0.93947 0.97360 0.90529 0.95275 0.95132 0.92697 0.93719 0.91222 0.93381 0.89458 0.94014 0.89142 0.91401 0.94893 0.90036 0.91294 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.91 71.98 0.71 -3.22 16 2 C -0.11 -3.76 5.94 30.59 0.18 -3.58 16 3 C 0.06 2.24 4.63 86.30 0.40 2.64 16 4 N -0.53 -21.85 4.56 -875.21 -3.99 -25.84 16 5 C 0.16 7.78 3.57 85.56 0.31 8.09 16 6 C -0.54 -30.85 8.07 25.60 0.21 -30.65 16 7 H 0.03 1.94 6.12 -2.91 -0.02 1.93 16 8 C 0.01 0.66 5.47 84.65 0.46 1.13 16 9 N -0.95 -60.19 13.96 21.44 0.30 -59.89 16 10 Si 0.94 44.58 27.38 68.60 1.88 46.46 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 H -0.25 -10.85 6.67 99.48 0.66 -10.19 16 14 C 0.10 3.93 1.74 44.97 0.08 4.01 16 15 H 0.01 0.54 6.75 -2.39 -0.02 0.53 16 16 C -0.11 -3.95 4.84 30.67 0.15 -3.81 16 17 C -0.11 -3.40 6.09 30.64 0.19 -3.21 16 18 C 0.06 1.58 5.46 86.32 0.47 2.05 16 19 N -0.57 -16.24 4.91 -922.58 -4.53 -20.77 16 20 C 0.03 0.63 9.59 127.69 1.22 1.85 16 21 C 0.08 2.46 4.53 86.33 0.39 2.85 16 22 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.04 1.62 6.54 -2.39 -0.02 1.60 16 27 H 0.01 0.38 6.35 -2.39 -0.02 0.37 16 28 H 0.08 2.61 5.75 -2.39 -0.01 2.60 16 29 H 0.03 1.41 5.80 -2.39 -0.01 1.40 16 30 H 0.03 1.46 5.42 -2.39 -0.01 1.45 16 31 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 32 H 0.04 1.88 6.48 -2.39 -0.02 1.87 16 33 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 37 H 0.09 1.92 8.09 -2.38 -0.02 1.90 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 41 H 0.07 2.20 6.18 -2.39 -0.01 2.18 16 42 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -66.36 310.99 -0.65 -67.02 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.92 Total: 14.87 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 4.77 Total: -21.85 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -8.22 Total: -106.50 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.46 kcal Total: -66.36 -0.65 -67.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255487001.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.772 kcal (2) G-P(sol) polarization free energy of solvation -66.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds