Wall clock time and date at job start Thu Apr 9 2020 12:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86801 * 120.00305 * 2 1 4 4 H 1.48501 * 109.47030 * 240.00110 * 3 2 1 5 5 H 1.48497 * 109.46795 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47014 * 119.99884 * 3 2 1 7 7 C 1.39026 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00288 * 179.97438 * 7 2 1 9 9 N 1.36905 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00110 * 179.97438 * 9 7 2 11 11 O 1.21621 * 120.00210 * 0.02562 * 10 9 7 12 12 C 1.47496 * 119.99914 * 180.02562 * 10 9 7 13 13 C 1.39798 * 120.09287 * 359.97438 * 12 10 9 14 14 C 1.37696 * 119.92820 * 179.76630 * 13 12 10 15 15 C 1.38981 * 120.10544 * 0.51336 * 14 13 12 16 16 O 1.35745 * 119.90913 * 179.76410 * 15 14 13 17 17 C 1.39091 * 120.18465 * 359.48729 * 15 14 13 18 18 Cl 1.73602 * 119.96522 * 180.27716 * 17 15 14 19 19 C 1.37803 * 120.06820 * 0.25680 * 17 15 14 20 20 H 0.96994 * 119.99725 * 0.02562 * 1 2 3 21 21 H 0.97008 * 119.99802 * 0.02562 * 9 7 2 22 22 H 1.08008 * 120.03547 * 0.04861 * 13 12 10 23 23 H 1.08002 * 119.94255 * 180.28005 * 14 13 12 24 24 H 0.96696 * 114.00154 * 269.72483 * 16 15 14 25 25 H 1.08000 * 120.05312 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1017 1.6963 -1.2125 5 1 1.2829 2.7464 0.0006 6 1 3.1016 1.6963 1.2125 7 6 2.0090 -1.2040 -0.0005 8 1 3.0889 -1.2041 -0.0010 9 7 1.3244 -2.3896 -0.0005 10 6 1.9982 -3.5568 -0.0016 11 8 3.2144 -3.5569 -0.0021 12 6 1.2607 -4.8341 -0.0022 13 6 -0.1373 -4.8363 -0.0011 14 6 -0.8224 -6.0307 -0.0065 15 6 -0.1264 -7.2337 -0.0022 16 8 -0.8058 -8.4088 -0.0027 17 6 1.2645 -7.2368 -0.0033 18 17 2.1282 -8.7428 -0.0052 19 6 1.9577 -6.0458 -0.0032 20 1 -0.4849 0.8400 -0.0004 21 1 0.3543 -2.3896 -0.0005 22 1 -0.6794 -3.9021 -0.0006 23 1 -1.9024 -6.0327 -0.0102 24 1 -1.0021 -8.7501 0.8805 25 1 3.0377 -6.0486 -0.0036 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037714274.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:37 Heat of formation + Delta-G solvation = -65.419937 kcal Electronic energy + Delta-G solvation = -14287.713870 eV Core-core repulsion = 11485.147010 eV Total energy + Delta-G solvation = -2802.566860 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 241.029 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.78419 -38.19409 -36.46054 -36.04041 -34.19890 -31.63537 -30.56904 -29.61086 -25.35101 -23.01022 -22.52147 -19.79610 -18.60717 -18.14567 -16.85466 -15.77521 -15.42421 -14.88318 -14.64785 -13.99854 -13.76828 -13.59164 -13.15984 -12.66522 -12.36093 -11.82421 -11.72445 -11.31212 -11.10466 -11.04664 -10.58631 -10.44314 -10.35186 -9.71350 -8.75912 -8.63604 -8.41711 -8.18446 -6.67307 -3.98937 0.97445 1.35983 2.21767 3.07156 3.15608 3.19796 3.34923 4.00354 4.11839 4.32561 4.71477 4.94048 5.17736 5.36459 5.50957 5.54393 5.81290 5.98895 6.28875 6.44641 6.60754 6.77469 7.32639 7.57055 7.84276 8.38166 8.94649 9.28880 9.85066 10.49063 Molecular weight = 241.03amu Principal moments of inertia in cm(-1) A = 0.049985 B = 0.005437 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.035055 B = 5149.019681 C = 5696.649979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.025 3.975 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.294 4.294 8 H 0.110 0.890 9 N -0.537 5.537 10 C 0.461 3.539 11 O -0.595 6.595 12 C -0.087 4.087 13 C -0.087 4.087 14 C -0.134 4.134 15 C 0.106 3.894 16 O -0.489 6.489 17 C -0.065 4.065 18 Cl -0.067 7.067 19 C -0.058 4.058 20 H 0.278 0.722 21 H 0.394 0.606 22 H 0.138 0.862 23 H 0.138 0.862 24 H 0.388 0.612 25 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 -10.995 1.652 11.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.179 4.179 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.423 4.423 8 H 0.127 0.873 9 N -0.171 5.171 10 C 0.249 3.751 11 O -0.483 6.483 12 C -0.091 4.091 13 C -0.107 4.107 14 C -0.152 4.152 15 C 0.059 3.941 16 O -0.298 6.298 17 C -0.092 4.092 18 Cl -0.039 7.039 19 C -0.078 4.078 20 H 0.088 0.912 21 H 0.229 0.771 22 H 0.156 0.844 23 H 0.156 0.844 24 H 0.244 0.756 25 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.135 -10.844 1.041 11.336 hybrid contribution -0.266 0.596 0.493 0.818 sum -3.400 -10.248 1.534 10.906 Atomic orbital electron populations 1.69580 1.06191 1.29118 1.47626 1.25424 0.95732 1.00251 0.96531 0.85799 0.78832 0.79595 0.79431 1.19519 1.20690 1.19532 1.19848 0.93855 0.82031 1.46614 0.87259 1.41915 1.09531 1.04746 1.60878 1.17510 0.87499 0.83044 0.87004 1.90623 1.13059 1.86829 1.57740 1.20341 0.93250 0.94691 1.00803 1.21429 0.93479 0.98398 0.97386 1.21226 1.00549 0.90842 1.02605 1.18238 0.87744 0.85971 1.02106 1.84797 1.75884 1.35837 1.33318 1.21224 0.91504 0.87732 1.08789 1.98343 1.76610 1.31854 1.97053 1.21028 1.01328 0.88855 0.96599 0.91186 0.77081 0.84414 0.84447 0.75636 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.74 13.05 55.50 0.72 -22.01 15 2 C 0.02 0.63 5.50 -17.45 -0.10 0.53 15 3 Si 0.94 19.97 29.55 -169.99 -5.02 14.94 15 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 7 C -0.29 -7.90 9.68 -14.99 -0.15 -8.04 15 8 H 0.11 3.06 7.15 -52.49 -0.38 2.68 15 9 N -0.54 -13.35 5.23 -11.94 -0.06 -13.41 15 10 C 0.46 11.13 7.71 -12.49 -0.10 11.04 15 11 O -0.60 -16.35 15.91 5.26 0.08 -16.26 15 12 C -0.09 -1.68 5.88 -104.96 -0.62 -2.30 15 13 C -0.09 -1.42 9.53 -39.20 -0.37 -1.79 15 14 C -0.13 -1.85 9.97 -39.50 -0.39 -2.24 15 15 C 0.11 1.49 6.71 -38.99 -0.26 1.23 15 16 O -0.49 -5.81 12.94 -18.94 -0.25 -6.05 15 17 C -0.07 -1.01 6.32 -39.42 -0.25 -1.26 15 18 Cl -0.07 -0.94 28.49 -51.86 -1.48 -2.41 15 19 C -0.06 -1.03 9.36 -39.16 -0.37 -1.40 15 20 H 0.28 6.71 8.31 -40.82 -0.34 6.38 15 21 H 0.39 9.15 5.91 -40.82 -0.24 8.91 15 22 H 0.14 2.15 6.39 -52.48 -0.34 1.82 15 23 H 0.14 1.53 8.06 -52.49 -0.42 1.11 15 24 H 0.39 2.79 9.06 45.56 0.41 3.20 15 25 H 0.15 2.69 7.64 -52.49 -0.40 2.29 15 LS Contribution 249.68 15.07 3.76 3.76 Total: -1.00 -30.06 249.68 -5.33 -35.40 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -0.50 Total: 10.29 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -2.60 Total: -4.24 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.66 Total: -35.42 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.16 Total: -22.32 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.48 Total: -2.41 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.06 -5.33 -35.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714274.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.023 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds