Wall clock time and date at job start Thu Apr 9 2020 12:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86800 * 119.99691 * 2 1 4 4 H 1.48494 * 109.46941 * 269.99676 * 3 2 1 5 5 H 1.48496 * 109.47289 * 30.00294 * 3 2 1 6 6 H 1.48504 * 109.46965 * 150.00039 * 3 2 1 7 7 C 1.39021 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99824 * 0.02562 * 7 2 1 9 9 N 1.36903 * 120.00019 * 180.02562 * 7 2 1 10 10 C 1.34779 * 119.99950 * 180.02562 * 9 7 2 11 11 O 1.21619 * 120.00070 * 359.97438 * 10 9 7 12 12 C 1.47425 * 119.99891 * 179.97438 * 10 9 7 13 13 C 1.39768 * 120.19144 * 0.02562 * 12 10 9 14 14 C 1.37886 * 119.88966 * 179.97438 * 13 12 10 15 15 Cl 1.73593 * 119.86202 * 179.97438 * 14 13 12 16 16 C 1.38661 * 120.27616 * 0.02831 * 14 13 12 17 17 C 1.38074 * 120.38617 * 359.66825 * 16 14 13 18 18 C 1.38667 * 120.10559 * 0.61016 * 17 16 14 19 19 O 1.35685 * 120.14010 * 179.69466 * 18 17 16 20 20 H 0.96997 * 120.00592 * 359.97438 * 1 2 3 21 21 H 0.96996 * 119.99824 * 359.97438 * 9 7 2 22 22 H 1.08001 * 120.06052 * 359.95647 * 13 12 10 23 23 H 1.07999 * 119.80392 * 179.97438 * 16 14 13 24 24 H 1.08004 * 119.94454 * 180.30093 * 17 16 14 25 25 H 0.96696 * 114.00119 * 269.72356 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4952 2.0464 -1.4000 5 1 1.4452 2.6527 0.7001 6 1 3.5453 1.4402 0.7001 7 6 2.0090 -1.2039 0.0005 8 1 1.4689 -2.1393 0.0005 9 7 3.3780 -1.2039 0.0011 10 6 4.0519 -2.3711 0.0011 11 8 3.4438 -3.4244 0.0011 12 6 5.5262 -2.3711 0.0011 13 6 6.2290 -1.1629 0.0016 14 6 7.6078 -1.1702 0.0021 15 17 8.4800 0.3308 0.0021 16 6 8.3006 -2.3713 0.0015 17 6 7.6179 -3.5714 0.0073 18 6 6.2313 -3.5828 0.0010 19 8 5.5596 -4.7617 0.0004 20 1 -0.4851 0.8400 0.0004 21 1 3.8629 -0.3639 0.0007 22 1 5.6931 -0.2253 0.0013 23 1 9.3806 -2.3680 0.0016 24 1 8.1647 -4.5027 0.0117 25 1 5.3653 -5.1032 -0.8831 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037714299.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:41 Heat of formation + Delta-G solvation = -56.184041 kcal Electronic energy + Delta-G solvation = -14592.984509 eV Core-core repulsion = 11790.818147 eV Total energy + Delta-G solvation = -2802.166362 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 241.029 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.93634 -37.77677 -36.99229 -35.82478 -34.09036 -32.06071 -30.95155 -29.38765 -25.44664 -23.29902 -22.23171 -19.73995 -19.02856 -17.90223 -16.84617 -15.95006 -15.33991 -14.98088 -14.82606 -14.13666 -13.62497 -13.56035 -13.04835 -12.84933 -12.47966 -12.21155 -12.07957 -11.35934 -11.09435 -11.01243 -10.70886 -10.45396 -10.09425 -9.74564 -8.98996 -8.61900 -8.41374 -8.32599 -6.51281 -3.93828 0.93090 1.16019 2.10975 2.93918 2.97913 3.06434 3.25115 3.95310 4.15071 4.35628 4.46349 4.78579 4.93297 5.16263 5.34418 5.52212 5.66854 5.86416 6.00871 6.18089 6.42719 6.62125 7.38126 7.96184 7.98119 8.42021 8.77346 9.23070 9.69609 10.60129 Molecular weight = 241.03amu Principal moments of inertia in cm(-1) A = 0.022200 B = 0.008893 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.942099 B = 3147.814529 C = 4396.347913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.044 3.956 3 Si 0.875 3.125 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.296 4.296 8 H 0.125 0.875 9 N -0.569 5.569 10 C 0.474 3.526 11 O -0.561 6.561 12 C -0.113 4.113 13 C -0.087 4.087 14 C -0.047 4.047 15 Cl -0.076 7.076 16 C -0.095 4.095 17 C -0.141 4.141 18 C 0.156 3.844 19 O -0.472 6.472 20 H 0.278 0.722 21 H 0.371 0.629 22 H 0.133 0.867 23 H 0.135 0.865 24 H 0.139 0.861 25 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.571 -0.098 -1.703 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.161 4.161 3 Si 0.701 3.299 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.425 4.425 8 H 0.143 0.857 9 N -0.206 5.206 10 C 0.262 3.738 11 O -0.445 6.445 12 C -0.118 4.118 13 C -0.107 4.107 14 C -0.074 4.074 15 Cl -0.047 7.047 16 C -0.115 4.115 17 C -0.160 4.160 18 C 0.109 3.891 19 O -0.282 6.282 20 H 0.089 0.911 21 H 0.205 0.795 22 H 0.151 0.849 23 H 0.153 0.847 24 H 0.157 0.843 25 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 15.980 -0.484 -1.098 16.025 hybrid contribution 0.607 1.578 -0.442 1.747 sum 16.587 1.094 -1.540 16.694 Atomic orbital electron populations 1.69599 1.05764 1.28130 1.46609 1.25120 0.95582 0.98270 0.97164 0.86717 0.80078 0.83726 0.79401 1.19056 1.19580 1.19190 1.19560 0.79131 0.96975 1.46839 0.85704 1.42263 1.07693 1.06374 1.64292 1.17258 0.85103 0.84812 0.86580 1.90685 1.68458 1.30245 1.55110 1.20807 0.95721 0.92519 1.02775 1.21160 0.92069 0.98300 0.99205 1.20717 0.92031 0.87153 1.07477 1.98355 1.76451 1.32786 1.97124 1.20880 1.00191 0.90100 1.00331 1.21313 0.93199 0.98361 1.03132 1.18500 0.89181 0.85301 0.96136 1.84746 1.76525 1.33738 1.33228 0.91115 0.79502 0.84875 0.84709 0.84324 0.74899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.37 13.95 55.50 0.77 -23.59 15 2 C 0.04 1.18 5.50 -17.45 -0.10 1.08 15 3 Si 0.88 18.90 27.74 -169.99 -4.71 14.19 15 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 5 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 6 H -0.27 -5.31 6.52 56.52 0.37 -4.94 15 7 C -0.30 -8.25 10.16 -15.00 -0.15 -8.40 15 8 H 0.13 3.94 7.38 -52.48 -0.39 3.55 15 9 N -0.57 -13.75 5.03 -11.95 -0.06 -13.81 15 10 C 0.47 11.24 7.71 -12.52 -0.10 11.14 15 11 O -0.56 -15.19 14.73 -16.63 -0.24 -15.43 15 12 C -0.11 -2.14 5.89 -104.85 -0.62 -2.75 15 13 C -0.09 -1.42 9.31 -39.14 -0.36 -1.78 15 14 C -0.05 -0.65 6.31 -39.55 -0.25 -0.90 15 15 Cl -0.08 -0.94 28.94 -51.86 -1.50 -2.45 15 16 C -0.10 -1.15 9.81 -39.48 -0.39 -1.54 15 17 C -0.14 -1.80 9.97 -39.48 -0.39 -2.19 15 18 C 0.16 2.58 6.72 -38.69 -0.26 2.32 15 19 O -0.47 -8.02 11.57 -40.65 -0.47 -8.49 15 20 H 0.28 7.20 8.31 -40.82 -0.34 6.86 15 21 H 0.37 7.95 3.79 -40.82 -0.15 7.80 15 22 H 0.13 2.12 6.40 -52.49 -0.34 1.78 15 23 H 0.14 1.24 8.06 -52.49 -0.42 0.82 15 24 H 0.14 1.37 8.06 -52.48 -0.42 0.95 15 25 H 0.39 5.10 9.06 45.56 0.41 5.51 15 LS Contribution 245.15 15.07 3.69 3.69 Total: -1.00 -31.56 245.15 -5.62 -37.18 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -0.48 Total: 11.75 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.62 Total: -3.03 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.71 Total: -37.41 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.72 Total: -23.92 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.71 Total: 14.19 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.56 -5.62 -37.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714299.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.005 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds