Wall clock time and date at job start Thu Apr 9 2020 12:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65603 * 120.00178 * 2 1 4 4 O 1.42097 * 106.40214 * 178.54035 * 3 2 1 5 5 O 1.42097 * 106.39894 * 311.46153 * 3 2 1 6 6 C 1.76198 * 107.21760 * 64.99777 * 3 2 1 7 7 C 1.38630 * 119.75128 * 269.73104 * 6 3 2 8 8 C 1.37625 * 120.24879 * 179.72324 * 7 6 3 9 9 C 1.40718 * 119.74204 * 0.57048 * 8 7 6 10 10 C 1.41393 * 120.24282 * 179.68218 * 9 8 7 11 11 H 1.08001 * 120.00015 * 204.39888 * 10 9 8 12 12 C 1.39944 * 119.99886 * 24.41058 * 10 9 8 13 13 N 1.30824 * 120.00553 * 17.84111 * 12 10 9 14 14 Si 1.86803 * 119.99835 * 197.84641 * 12 10 9 15 15 H 1.48506 * 109.47244 * 89.99653 * 14 12 10 16 16 H 1.48495 * 109.47516 * 209.99533 * 14 12 10 17 17 H 1.48497 * 109.47035 * 329.99474 * 14 12 10 18 18 C 1.40714 * 119.51050 * 359.69971 * 9 8 7 19 19 C 1.37613 * 119.74594 * 0.02562 * 18 9 8 20 20 H 1.09003 * 109.46748 * 299.99916 * 1 2 3 21 21 H 1.08990 * 109.46983 * 59.99786 * 1 2 3 22 22 H 1.08998 * 109.47257 * 180.02562 * 1 2 3 23 23 H 0.97001 * 120.00236 * 180.02562 * 2 1 3 24 24 H 1.08002 * 119.87720 * 359.97438 * 7 6 3 25 25 H 1.07998 * 120.12778 * 180.27348 * 8 7 6 26 26 H 0.96998 * 120.00030 * 180.02562 * 13 12 10 27 27 H 1.08005 * 120.12836 * 179.97438 * 18 9 8 28 28 H 1.08011 * 119.87234 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 3.6738 1.1002 0.0347 5 8 1.7120 2.2329 -1.0216 6 6 1.9378 2.2415 1.5253 7 6 0.8578 3.1064 1.6106 8 6 0.5676 3.7381 2.7984 9 6 1.3792 3.5124 3.9256 10 6 1.0947 4.1610 5.1494 11 1 1.8811 4.3180 5.8728 12 6 -0.2058 4.5992 5.4232 13 7 -1.2145 4.1212 4.7409 14 14 -0.5015 5.8668 6.7630 15 1 -0.4314 7.2303 6.1787 16 1 -1.8444 5.6525 7.3597 17 1 0.5361 5.7256 7.8159 18 6 2.4761 2.6367 3.8257 19 6 2.7441 2.0116 2.6294 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.9500 -0.8400 -0.0004 24 1 0.2394 3.2822 0.7428 25 1 -0.2768 4.4081 2.8639 26 1 -2.1159 4.4252 4.9306 27 1 3.1059 2.4565 4.6845 28 1 3.5858 1.3394 2.5504 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038417034.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:49 Heat of formation + Delta-G solvation = -68.870317 kcal Electronic energy + Delta-G solvation = -15055.940023 eV Core-core repulsion = 12391.100343 eV Total energy + Delta-G solvation = -2664.839679 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.57697 -36.46586 -35.10324 -34.50708 -34.03683 -30.26080 -29.46750 -25.83321 -25.57813 -21.51542 -21.13158 -18.86824 -17.62152 -17.13165 -16.62244 -15.64402 -15.51043 -14.32498 -14.11926 -13.56057 -13.31699 -13.16380 -12.44898 -12.39131 -12.18170 -11.79124 -11.45920 -11.35098 -11.26511 -11.20929 -11.12922 -10.90811 -10.39892 -9.77284 -9.65627 -9.51724 -9.03146 -7.96680 -7.70523 -7.15280 -4.80853 1.30618 2.25002 2.87456 2.90706 2.92304 2.93229 3.65845 3.80933 4.24270 4.55877 5.19134 5.34240 5.43693 5.78871 6.00638 6.06385 6.11631 6.17751 6.67642 6.70693 6.91264 7.04750 7.31778 7.35655 7.42652 7.63347 7.76807 7.96535 8.31453 8.50867 8.64640 9.76277 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.046376 B = 0.006531 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.614441 B = 4286.343024 C = 4535.851038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.131 6.131 3 S 2.697 3.303 4 O -0.988 6.988 5 O -0.985 6.985 6 C -0.787 4.787 7 C -0.018 4.018 8 C -0.183 4.183 9 C 0.138 3.862 10 C -0.436 4.436 11 H 0.088 0.912 12 C 0.073 3.927 13 N -0.767 5.767 14 Si 0.918 3.082 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.258 1.258 18 C -0.239 4.239 19 C 0.002 3.998 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.409 0.591 24 H 0.104 0.896 25 H 0.123 0.877 26 H 0.289 0.711 27 H 0.100 0.900 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 -4.278 -2.190 4.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.887 5.887 3 S 2.794 3.206 4 O -0.979 6.979 5 O -0.975 6.975 6 C -0.883 4.883 7 C -0.038 4.038 8 C -0.203 4.203 9 C 0.135 3.865 10 C -0.463 4.463 11 H 0.106 0.894 12 C -0.149 4.149 13 N -0.389 5.389 14 Si 0.741 3.259 15 H -0.188 1.188 16 H -0.199 1.199 17 H -0.182 1.182 18 C -0.260 4.260 19 C -0.018 4.018 20 H 0.083 0.917 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.240 0.760 24 H 0.122 0.878 25 H 0.140 0.860 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.999 -3.848 -2.945 4.948 hybrid contribution -0.451 0.169 1.374 1.456 sum -1.450 -3.679 -1.571 4.255 Atomic orbital electron populations 1.21360 0.79223 1.03032 1.02121 1.55523 1.15725 1.24584 1.92857 1.01164 0.72282 0.72279 0.74880 1.93484 1.31935 1.84013 1.88439 1.93478 1.78978 1.68284 1.56793 1.29171 1.13939 1.25454 1.19748 1.20285 0.93063 0.93437 0.96996 1.21345 1.03035 1.04304 0.91649 1.17867 0.89444 0.86608 0.92604 1.19952 0.94832 1.29718 1.01800 0.89422 1.26130 0.95663 0.95564 0.97584 1.69813 1.00758 1.33210 1.35139 0.86137 0.78779 0.80638 0.80350 1.18775 1.19879 1.18200 1.21054 1.03532 1.04561 0.96848 1.20174 0.94507 0.95287 0.91852 0.91725 0.92084 0.90972 0.75956 0.87823 0.85956 0.89993 0.88193 0.87757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 11.14 59.85 0.67 1.86 15 2 N -1.13 -16.92 6.19 -16.64 -0.10 -17.03 15 3 S 2.70 51.97 5.73 -107.50 -0.62 51.35 15 4 O -0.99 -20.87 17.26 -57.17 -0.99 -21.86 15 5 O -0.99 -21.18 16.98 -57.17 -0.97 -22.15 15 6 C -0.79 -17.34 5.97 -39.29 -0.23 -17.57 15 7 C -0.02 -0.40 9.49 -39.66 -0.38 -0.78 15 8 C -0.18 -4.56 8.70 -38.87 -0.34 -4.90 15 9 C 0.14 3.51 5.57 -106.83 -0.60 2.91 15 10 C -0.44 -10.67 9.05 -37.74 -0.34 -11.01 15 11 H 0.09 2.04 7.91 -52.49 -0.41 1.62 15 12 C 0.07 1.66 5.14 -17.34 -0.09 1.57 15 13 N -0.77 -18.04 10.95 55.55 0.61 -17.44 15 14 Si 0.92 16.95 29.59 -169.99 -5.03 11.92 15 15 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 16 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 17 H -0.26 -4.72 7.11 56.52 0.40 -4.32 15 18 C -0.24 -5.68 9.80 -38.88 -0.38 -6.06 15 19 C 0.00 0.04 9.49 -39.66 -0.38 -0.33 15 20 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.06 0.80 8.10 -51.93 -0.42 0.38 15 22 H 0.07 0.73 8.14 -51.93 -0.42 0.30 15 23 H 0.41 5.02 8.96 -34.47 -0.31 4.72 15 24 H 0.10 2.20 7.59 -52.49 -0.40 1.81 15 25 H 0.12 3.08 6.16 -52.49 -0.32 2.75 15 26 H 0.29 6.08 8.30 -40.82 -0.34 5.74 15 27 H 0.10 2.18 8.06 -52.48 -0.42 1.76 15 28 H 0.10 2.11 7.60 -52.48 -0.40 1.71 15 LS Contribution 261.33 15.07 3.94 3.94 Total: -1.00 -29.68 261.33 -7.89 -37.57 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -2.67 Total: 8.00 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: -2.07 Total: -34.31 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.51 Total: -34.46 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.96 Total: -44.01 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Atomic # 16 Polarization: 51.97 SS G_CDS: -0.62 Total: 51.35 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.68 -7.89 -37.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038417034.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.299 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds