Wall clock time and date at job start Thu Apr 9 2020 12:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99825 * 2 1 4 4 C 1.46893 * 111.00412 * 123.96201 * 2 1 3 5 5 C 1.53004 * 109.47291 * 75.74400 * 4 2 1 6 6 C 1.53121 * 109.52588 * 185.21795 * 5 4 2 7 7 C 1.53031 * 109.28255 * 182.43956 * 6 5 4 8 8 N 1.46844 * 109.52301 * 59.17407 * 7 6 5 9 9 C 1.46899 * 111.00165 * 174.16086 * 8 7 6 10 10 C 1.53000 * 109.47115 * 170.00603 * 9 8 7 11 11 C 1.50698 * 109.47194 * 180.02562 * 10 9 8 12 12 H 1.08012 * 120.00018 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00432 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99880 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00477 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47254 * 89.99879 * 15 13 11 17 17 H 1.48496 * 109.47428 * 209.99862 * 15 13 11 18 18 H 1.48500 * 109.46931 * 330.00040 * 15 13 11 19 19 C 1.46845 * 111.20151 * 298.26194 * 8 7 6 20 20 C 1.53038 * 109.52258 * 61.73858 * 19 8 7 21 21 H 1.09001 * 109.46715 * 296.03427 * 1 2 3 22 22 H 1.08996 * 109.47727 * 56.03872 * 1 2 3 23 23 H 1.09000 * 109.46931 * 176.04554 * 1 2 3 24 24 H 1.08999 * 109.46902 * 188.82249 * 3 2 1 25 25 H 1.09001 * 109.47424 * 308.82708 * 3 2 1 26 26 H 1.09003 * 109.46414 * 68.82790 * 3 2 1 27 27 H 1.08998 * 109.47276 * 315.74643 * 4 2 1 28 28 H 1.08994 * 109.47052 * 195.74216 * 4 2 1 29 29 H 1.09007 * 109.52076 * 305.34151 * 5 4 2 30 30 H 1.09001 * 109.50064 * 62.49846 * 6 5 4 31 31 H 1.08996 * 109.50005 * 302.38399 * 6 5 4 32 32 H 1.09002 * 109.45930 * 299.16825 * 7 6 5 33 33 H 1.08993 * 109.45722 * 179.18850 * 7 6 5 34 34 H 1.08998 * 109.46943 * 50.00335 * 9 8 7 35 35 H 1.08999 * 109.47124 * 290.00198 * 9 8 7 36 36 H 1.09003 * 109.47270 * 299.99774 * 10 9 8 37 37 H 1.08998 * 109.47434 * 60.00032 * 10 9 8 38 38 H 0.97005 * 120.00467 * 179.97438 * 14 13 11 39 39 H 1.09004 * 109.46380 * 181.75406 * 19 8 7 40 40 H 1.08996 * 109.46190 * 301.72446 * 19 8 7 41 41 H 1.08997 * 109.50582 * 180.87580 * 20 19 8 42 42 H 1.09007 * 109.50018 * 60.76448 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9956 -0.7661 1.1374 5 6 1.8468 -2.2628 0.8569 6 6 2.2740 -3.0600 2.0924 7 6 2.1810 -4.5563 1.7854 8 7 3.0514 -4.8788 0.6475 9 6 3.0944 -6.3281 0.4118 10 6 3.7998 -6.6080 -0.9168 11 6 3.8433 -8.0948 -1.1590 12 1 3.4115 -8.7724 -0.4372 13 6 4.4344 -8.5901 -2.3018 14 7 4.9598 -7.7651 -3.1810 15 14 4.4891 -10.4331 -2.6017 16 1 3.2746 -10.8494 -3.3480 17 1 5.6977 -10.7698 -3.3960 18 1 4.5382 -11.1452 -1.2995 19 6 2.6312 -4.1610 -0.5627 20 6 2.7376 -2.6529 -0.3257 21 1 -0.3633 0.4511 0.9234 22 1 -0.3634 0.5740 -0.8523 23 1 -0.3633 -1.0252 -0.0709 24 1 3.0737 1.3467 -0.1576 25 1 1.5241 1.9416 -0.8006 26 1 1.7791 1.8435 0.9584 27 1 1.4387 -0.5082 2.0382 28 1 3.0491 -0.5263 1.2804 29 1 0.8067 -2.4874 0.6203 30 1 1.6159 -2.8182 2.9270 31 1 3.3013 -2.8050 2.3526 32 1 1.1508 -4.8130 1.5387 33 1 2.4984 -5.1265 2.6584 34 1 2.0781 -6.7203 0.3733 35 1 3.6402 -6.8120 1.2218 36 1 3.2540 -6.1242 -1.7269 37 1 4.8160 -6.2159 -0.8783 38 1 5.3760 -8.1135 -3.9849 39 1 3.2755 -4.4442 -1.3951 40 1 1.5989 -4.4197 -0.7983 41 1 2.4109 -2.1202 -1.2187 42 1 3.7724 -2.3916 -0.1036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042393513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:55 Heat of formation + Delta-G solvation = -8.365067 kcal Electronic energy + Delta-G solvation = -17757.214212 eV Core-core repulsion = 15157.463312 eV Total energy + Delta-G solvation = -2599.750900 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.09095 -37.21679 -34.16702 -32.54830 -30.51197 -29.46298 -27.73600 -27.06023 -24.37552 -22.96807 -22.77373 -20.95805 -19.89532 -19.19063 -16.48237 -15.61607 -15.36402 -15.30068 -14.56272 -14.52158 -14.29429 -13.87327 -13.70014 -13.00289 -12.76989 -12.52143 -12.43036 -12.09663 -11.91687 -11.81159 -11.58919 -11.43628 -11.01316 -10.90802 -10.80383 -10.52428 -10.36691 -10.13087 -9.91374 -9.77030 -9.22325 -9.01080 -8.43639 -8.29837 -7.56911 -5.96466 -3.98579 3.34357 3.40468 3.44022 3.83359 4.44989 4.63893 4.83474 4.97352 5.03161 5.14666 5.19056 5.33592 5.39331 5.40322 5.52566 5.59310 5.65683 5.70004 5.73321 5.80003 5.84544 5.95619 6.07896 6.16352 6.26238 6.30209 6.43574 6.47081 6.60386 6.73451 6.77071 6.91881 6.95270 7.00859 7.61168 7.72203 7.89704 7.92277 8.11111 8.47918 9.08200 9.64856 11.14918 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.043158 B = 0.004291 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.622972 B = 6524.211543 C = 6892.722307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.025 3.975 4 C 0.061 3.939 5 C -0.082 4.082 6 C -0.109 4.109 7 C 0.057 3.943 8 N -0.539 5.539 9 C 0.062 3.938 10 C 0.021 3.979 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.050 3.950 20 C -0.099 4.099 21 H 0.021 0.979 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.021 0.979 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.017 0.983 35 H 0.060 0.940 36 H 0.021 0.979 37 H 0.025 0.975 38 H 0.260 0.740 39 H 0.092 0.908 40 H 0.022 0.978 41 H 0.071 0.929 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.675 15.811 8.456 19.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.268 5.268 3 C -0.123 4.123 4 C -0.067 4.067 5 C -0.101 4.101 6 C -0.147 4.147 7 C -0.072 4.072 8 N -0.264 5.264 9 C -0.064 4.064 10 C -0.016 4.016 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.078 4.078 20 C -0.137 4.137 21 H 0.040 0.960 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.035 0.965 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.040 0.960 41 H 0.090 0.910 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.949 15.745 7.975 18.968 hybrid contribution -1.102 -0.916 0.331 1.471 sum -8.051 14.829 8.306 18.807 Atomic orbital electron populations 1.22424 0.87616 1.02416 1.00001 1.61908 1.07765 1.13408 1.43746 1.22384 1.01052 0.88979 0.99891 1.22226 0.99926 0.94044 0.90465 1.21191 0.99944 0.92713 0.96239 1.21596 1.01672 0.94894 0.96583 1.21996 0.94643 0.95467 0.95051 1.62049 1.50500 1.09329 1.04555 1.22296 0.98463 0.84475 1.01200 1.19243 0.96127 0.96218 0.90059 1.21202 1.37280 0.92252 1.05265 0.92812 1.24988 0.95423 0.97759 0.96135 1.69967 1.38525 1.34217 1.10575 0.86599 0.77455 0.85756 0.78210 1.20742 1.21203 1.19895 1.22223 0.98626 0.93079 0.93870 1.21526 0.99457 0.95130 0.97569 0.96015 0.91592 0.91146 0.91257 0.91597 0.96016 0.95029 0.90842 0.91822 0.92520 0.91222 0.95828 0.91411 0.96461 0.92123 0.96104 0.95700 0.93014 0.88981 0.95976 0.91040 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.39 60.07 0.56 0.79 16 2 N -0.54 -5.93 4.48 -251.26 -1.12 -7.05 16 3 C 0.03 0.23 9.52 60.06 0.57 0.80 16 4 C 0.06 0.67 4.39 -3.83 -0.02 0.66 16 5 C -0.08 -1.05 2.31 -90.50 -0.21 -1.25 16 6 C -0.11 -1.40 5.38 -26.65 -0.14 -1.54 16 7 C 0.06 0.89 5.42 -3.84 -0.02 0.87 16 8 N -0.54 -10.29 4.81 -234.68 -1.13 -11.41 16 9 C 0.06 1.38 5.21 -3.82 -0.02 1.36 16 10 C 0.02 0.55 4.22 -27.88 -0.12 0.43 16 11 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 12 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.15 13.29 55.43 0.74 -26.42 16 15 Si 0.89 21.93 29.54 -169.99 -5.02 16.90 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.05 0.92 4.85 -3.83 -0.02 0.90 16 20 C -0.10 -1.50 5.24 -26.65 -0.14 -1.64 16 21 H 0.02 0.19 8.09 -51.93 -0.42 -0.23 16 22 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 23 H 0.07 0.71 6.80 -51.93 -0.35 0.35 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.53 8.04 -51.93 -0.42 0.11 16 26 H 0.02 0.18 8.13 -51.93 -0.42 -0.24 16 27 H 0.03 0.33 7.96 -51.93 -0.41 -0.09 16 28 H 0.07 0.81 7.94 -51.93 -0.41 0.39 16 29 H 0.06 0.84 6.78 -51.93 -0.35 0.49 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 34 H 0.02 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.02 0.58 6.21 -51.93 -0.32 0.25 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.09 1.94 5.81 -51.93 -0.30 1.64 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 322.98 15.07 4.87 4.87 Total: -1.00 -30.19 322.98 -9.64 -39.83 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -8.01 Total: -4.32 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 0.04 Total: -12.40 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -1.52 Total: -44.88 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.19 -9.64 -39.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042393513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.463 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds