Wall clock time and date at job start Thu Apr 9 2020 12:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99825 * 2 1 4 4 C 1.46893 * 111.00412 * 123.96201 * 2 1 3 5 5 C 1.53004 * 109.47291 * 75.74400 * 4 2 1 6 6 C 1.53121 * 109.52588 * 185.21795 * 5 4 2 7 7 C 1.53031 * 109.28255 * 182.43956 * 6 5 4 8 8 N 1.46844 * 109.52301 * 59.17407 * 7 6 5 9 9 C 1.46899 * 111.00165 * 174.16086 * 8 7 6 10 10 C 1.53000 * 109.47115 * 170.00603 * 9 8 7 11 11 C 1.50698 * 109.47194 * 180.02562 * 10 9 8 12 12 H 1.08012 * 120.00018 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00432 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99880 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00477 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47254 * 89.99879 * 15 13 11 17 17 H 1.48496 * 109.47428 * 209.99862 * 15 13 11 18 18 H 1.48500 * 109.46931 * 330.00040 * 15 13 11 19 19 C 1.46845 * 111.20151 * 298.26194 * 8 7 6 20 20 C 1.53038 * 109.52258 * 61.73858 * 19 8 7 21 21 H 1.09001 * 109.46715 * 296.03427 * 1 2 3 22 22 H 1.08996 * 109.47727 * 56.03872 * 1 2 3 23 23 H 1.09000 * 109.46931 * 176.04554 * 1 2 3 24 24 H 1.08999 * 109.46902 * 188.82249 * 3 2 1 25 25 H 1.09001 * 109.47424 * 308.82708 * 3 2 1 26 26 H 1.09003 * 109.46414 * 68.82790 * 3 2 1 27 27 H 1.08998 * 109.47276 * 315.74643 * 4 2 1 28 28 H 1.08994 * 109.47052 * 195.74216 * 4 2 1 29 29 H 1.09007 * 109.52076 * 305.34151 * 5 4 2 30 30 H 1.09001 * 109.50064 * 62.49846 * 6 5 4 31 31 H 1.08996 * 109.50005 * 302.38399 * 6 5 4 32 32 H 1.09002 * 109.45930 * 299.16825 * 7 6 5 33 33 H 1.08993 * 109.45722 * 179.18850 * 7 6 5 34 34 H 1.08998 * 109.46943 * 50.00335 * 9 8 7 35 35 H 1.08999 * 109.47124 * 290.00198 * 9 8 7 36 36 H 1.09003 * 109.47270 * 299.99774 * 10 9 8 37 37 H 1.08998 * 109.47434 * 60.00032 * 10 9 8 38 38 H 0.97005 * 120.00467 * 179.97438 * 14 13 11 39 39 H 1.09004 * 109.46380 * 181.75406 * 19 8 7 40 40 H 1.08996 * 109.46190 * 301.72446 * 19 8 7 41 41 H 1.08997 * 109.50582 * 180.87580 * 20 19 8 42 42 H 1.09007 * 109.50018 * 60.76448 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9956 -0.7661 1.1374 5 6 1.8468 -2.2628 0.8569 6 6 2.2740 -3.0600 2.0924 7 6 2.1810 -4.5563 1.7854 8 7 3.0514 -4.8788 0.6475 9 6 3.0944 -6.3281 0.4118 10 6 3.7998 -6.6080 -0.9168 11 6 3.8433 -8.0948 -1.1590 12 1 3.4115 -8.7724 -0.4372 13 6 4.4344 -8.5901 -2.3018 14 7 4.9598 -7.7651 -3.1810 15 14 4.4891 -10.4331 -2.6017 16 1 3.2746 -10.8494 -3.3480 17 1 5.6977 -10.7698 -3.3960 18 1 4.5382 -11.1452 -1.2995 19 6 2.6312 -4.1610 -0.5627 20 6 2.7376 -2.6529 -0.3257 21 1 -0.3633 0.4511 0.9234 22 1 -0.3634 0.5740 -0.8523 23 1 -0.3633 -1.0252 -0.0709 24 1 3.0737 1.3467 -0.1576 25 1 1.5241 1.9416 -0.8006 26 1 1.7791 1.8435 0.9584 27 1 1.4387 -0.5082 2.0382 28 1 3.0491 -0.5263 1.2804 29 1 0.8067 -2.4874 0.6203 30 1 1.6159 -2.8182 2.9270 31 1 3.3013 -2.8050 2.3526 32 1 1.1508 -4.8130 1.5387 33 1 2.4984 -5.1265 2.6584 34 1 2.0781 -6.7203 0.3733 35 1 3.6402 -6.8120 1.2218 36 1 3.2540 -6.1242 -1.7269 37 1 4.8160 -6.2159 -0.8783 38 1 5.3760 -8.1135 -3.9849 39 1 3.2755 -4.4442 -1.3951 40 1 1.5989 -4.4197 -0.7983 41 1 2.4109 -2.1202 -1.2187 42 1 3.7724 -2.3916 -0.1036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042393513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:54 Heat of formation + Delta-G solvation = -28.131528 kcal Electronic energy + Delta-G solvation = -17758.071350 eV Core-core repulsion = 15157.463312 eV Total energy + Delta-G solvation = -2600.608038 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33045 -38.27069 -35.80908 -34.38875 -31.87538 -31.19525 -28.45983 -28.36827 -26.11713 -24.43297 -23.99394 -22.11910 -21.43398 -20.48408 -18.62487 -16.75248 -16.56850 -16.41701 -16.18065 -15.83051 -15.55732 -15.41888 -14.82987 -14.39980 -14.20643 -14.12886 -13.49748 -13.24338 -13.12992 -13.06266 -12.88011 -12.60067 -12.54258 -12.40558 -12.35778 -12.08465 -11.88417 -11.67467 -11.36346 -11.28201 -11.05973 -10.90328 -10.52853 -9.21249 -9.13402 -8.20162 -6.31886 1.39838 1.41689 1.52957 2.40386 3.06282 3.12607 3.13642 3.83136 3.93431 4.01926 4.29979 4.32183 4.38819 4.43219 4.49767 4.53242 4.60358 4.66676 4.67515 4.71082 4.79889 4.83608 4.91382 5.01500 5.03757 5.05405 5.06107 5.09447 5.17847 5.28393 5.37080 5.44786 5.54920 5.67238 5.78946 6.10388 6.15628 6.18003 6.35189 6.39884 6.84648 7.37168 8.91899 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.043158 B = 0.004291 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.622972 B = 6524.211543 C = 6892.722307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.566 5.566 3 C 0.026 3.974 4 C 0.068 3.932 5 C -0.075 4.075 6 C -0.101 4.101 7 C 0.053 3.947 8 N -0.547 5.547 9 C 0.077 3.923 10 C 0.030 3.970 11 C -0.547 4.547 12 H 0.059 0.941 13 C 0.002 3.998 14 N -0.931 5.931 15 Si 0.968 3.032 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.263 1.263 19 C 0.054 3.946 20 C -0.087 4.087 21 H 0.031 0.969 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.031 0.969 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.077 0.923 34 H 0.017 0.983 35 H 0.063 0.937 36 H -0.001 1.001 37 H -0.008 1.008 38 H 0.264 0.736 39 H 0.054 0.946 40 H 0.016 0.984 41 H 0.071 0.929 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.610 16.119 9.854 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.290 5.290 3 C -0.122 4.122 4 C -0.060 4.060 5 C -0.094 4.094 6 C -0.140 4.140 7 C -0.074 4.074 8 N -0.272 5.272 9 C -0.051 4.051 10 C -0.007 4.007 11 C -0.585 4.585 12 H 0.078 0.922 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.792 3.208 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.187 1.187 19 C -0.074 4.074 20 C -0.125 4.125 21 H 0.050 0.950 22 H 0.091 0.909 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.096 0.904 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.017 0.983 37 H 0.011 0.989 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.089 0.911 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.895 16.071 9.391 20.219 hybrid contribution -0.812 -0.968 -0.132 1.270 sum -8.707 15.103 9.259 19.740 Atomic orbital electron populations 1.22423 0.86902 1.02162 1.00866 1.61881 1.08623 1.14568 1.43909 1.22397 1.00950 0.88108 1.00729 1.22101 1.00278 0.92440 0.91135 1.21120 0.99005 0.94343 0.94954 1.21565 1.02468 0.92490 0.97428 1.22154 0.93863 0.97827 0.93597 1.62032 1.52169 1.07263 1.05744 1.21978 0.97646 0.86850 0.98578 1.19055 0.94424 0.95185 0.92012 1.21633 1.37666 0.93399 1.05823 0.92245 1.25970 0.94695 1.03262 0.95701 1.70109 1.39144 1.36725 1.11130 0.85414 0.77790 0.79096 0.78536 1.19750 1.20594 1.18687 1.22124 0.97125 0.95432 0.92710 1.21400 0.99815 0.92247 0.99017 0.95010 0.90876 0.91947 0.91453 0.90814 0.95068 0.93539 0.90809 0.91933 0.89472 0.91259 0.95708 0.90447 0.96526 0.91829 0.98275 0.98946 0.92720 0.92793 0.96584 0.91077 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.39 127.69 1.20 1.62 16 2 N -0.57 -11.22 4.48 -948.86 -4.25 -15.47 16 3 C 0.03 0.41 9.52 127.69 1.22 1.63 16 4 C 0.07 1.34 4.39 86.31 0.38 1.72 16 5 C -0.08 -1.79 2.31 -10.72 -0.02 -1.81 16 6 C -0.10 -2.34 5.38 30.64 0.16 -2.18 16 7 C 0.05 1.58 5.42 86.32 0.47 2.05 16 8 N -0.55 -21.04 4.81 -896.40 -4.31 -25.35 16 9 C 0.08 3.46 5.21 86.30 0.45 3.91 16 10 C 0.03 1.69 4.22 29.85 0.13 1.82 16 11 C -0.55 -32.19 9.11 25.60 0.23 -31.95 16 12 H 0.06 3.35 7.74 -2.90 -0.02 3.32 16 13 C 0.00 0.10 5.46 84.65 0.46 0.56 16 14 N -0.93 -57.96 13.29 21.44 0.28 -57.68 16 15 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 C 0.05 2.07 4.85 86.33 0.42 2.49 16 20 C -0.09 -2.62 5.24 30.64 0.16 -2.46 16 21 H 0.03 0.47 8.09 -2.39 -0.02 0.45 16 22 H 0.07 1.11 8.07 -2.39 -0.02 1.10 16 23 H 0.06 1.15 6.80 -2.39 -0.02 1.13 16 24 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 25 H 0.07 1.03 8.04 -2.39 -0.02 1.01 16 26 H 0.03 0.43 8.13 -2.39 -0.02 0.41 16 27 H 0.05 0.80 7.96 -2.39 -0.02 0.78 16 28 H 0.07 1.45 7.94 -2.39 -0.02 1.43 16 29 H 0.06 1.53 6.78 -2.38 -0.02 1.52 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 2.15 8.12 -2.39 -0.02 2.13 16 34 H 0.02 0.74 8.08 -2.39 -0.02 0.72 16 35 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.00 -0.06 6.21 -2.39 -0.01 -0.07 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 39 H 0.05 2.45 5.81 -2.38 -0.01 2.43 16 40 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 2.14 7.85 -2.39 -0.02 2.12 16 42 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -65.77 322.98 -0.05 -65.82 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.94 Total: 8.18 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 5.25 Total: -22.62 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -8.27 Total: -98.49 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -65.77 -0.05 -65.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042393513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.687 kcal (2) G-P(sol) polarization free energy of solvation -65.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds