Wall clock time and date at job start Thu Apr 9 2020 12:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46909 * 109.47025 * 2 1 4 4 C 1.46846 * 111.00162 * 45.78723 * 3 2 1 5 5 C 1.53030 * 109.52377 * 185.84294 * 4 3 2 6 6 C 1.53123 * 109.28009 * 300.82027 * 5 4 3 7 7 N 1.46901 * 109.52431 * 177.55805 * 6 5 4 8 8 C 1.46899 * 110.99608 * 184.27339 * 7 6 5 9 9 C 1.46901 * 110.99766 * 60.32024 * 7 6 5 10 10 C 1.52998 * 109.47087 * 189.99990 * 9 7 6 11 11 C 1.50705 * 109.47156 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99822 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99866 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00218 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 119.99908 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47550 * 59.99567 * 15 13 11 17 17 H 1.48496 * 109.47316 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47172 * 300.00018 * 15 13 11 19 19 C 1.53118 * 109.15585 * 57.65675 * 6 5 4 20 20 C 1.46846 * 111.00243 * 170.00251 * 3 2 1 21 21 H 1.09000 * 109.47102 * 300.00128 * 1 2 3 22 22 H 1.08999 * 109.47491 * 59.99991 * 1 2 3 23 23 H 1.09001 * 109.46965 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47102 * 239.99872 * 2 1 3 25 25 H 1.09003 * 109.47357 * 119.99499 * 2 1 3 26 26 H 1.08999 * 109.46373 * 305.86398 * 4 3 2 27 27 H 1.08998 * 109.45881 * 65.82485 * 4 3 2 28 28 H 1.09003 * 109.50272 * 180.88314 * 5 4 3 29 29 H 1.09003 * 109.50540 * 60.76497 * 5 4 3 30 30 H 1.08993 * 109.52379 * 297.75279 * 6 5 4 31 31 H 1.08994 * 109.47586 * 60.00445 * 8 7 6 32 32 H 1.09010 * 109.46664 * 180.02562 * 8 7 6 33 33 H 1.08997 * 109.46974 * 299.99654 * 8 7 6 34 34 H 1.09005 * 109.47400 * 309.99932 * 9 7 6 35 35 H 1.09001 * 109.46771 * 69.99784 * 9 7 6 36 36 H 1.09005 * 109.46954 * 300.00216 * 10 9 7 37 37 H 1.08994 * 109.47093 * 60.00275 * 10 9 7 38 38 H 0.96997 * 120.00336 * 179.97438 * 14 13 11 39 39 H 1.09008 * 109.50062 * 182.40805 * 19 6 5 40 40 H 1.09002 * 109.53946 * 62.30558 * 19 6 5 41 41 H 1.08998 * 109.45759 * 294.17597 * 20 3 2 42 42 H 1.09003 * 109.46299 * 54.15067 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.2938 2.1999 0.9826 5 6 1.7263 3.6622 0.8539 6 6 3.2353 3.7659 1.0921 7 7 3.6662 5.1587 0.9122 8 6 5.1252 5.2782 1.0337 9 6 2.9841 6.0476 1.8624 10 6 3.2623 7.5046 1.4876 11 6 2.5621 8.4165 2.4620 12 1 1.9769 7.9985 3.2677 13 6 2.6687 9.7842 2.3248 14 7 3.3810 10.2932 1.3433 15 14 1.8015 10.9144 3.5329 16 1 2.3040 10.6513 4.9053 17 1 2.0714 12.3286 3.1691 18 1 0.3388 10.6619 3.4845 19 6 3.9654 2.8707 0.0870 20 6 3.4680 1.4313 0.2380 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.2222 2.1206 0.7995 27 1 1.5177 1.8420 1.9875 28 1 1.1989 4.2642 1.5939 29 1 1.4900 4.0249 -0.1465 30 1 3.4673 3.4399 2.1059 31 1 5.6049 4.6631 0.2725 32 1 5.4171 6.3196 0.8968 33 1 5.4363 4.9411 2.0225 34 1 1.9106 5.8620 1.8272 35 1 3.3534 5.8546 2.8696 36 1 4.3359 7.6902 1.5228 37 1 2.8931 7.6975 0.4804 38 1 3.4557 11.2554 1.2466 39 1 5.0378 2.9071 0.2791 40 1 3.7649 3.2206 -0.9257 41 1 3.6817 1.0770 1.2464 42 1 3.9755 0.7939 -0.4861 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042616556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:57 Heat of formation + Delta-G solvation = -1.025234 kcal Electronic energy + Delta-G solvation = -17890.242009 eV Core-core repulsion = 15290.809388 eV Total energy + Delta-G solvation = -2599.432621 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -39.45851 -36.95482 -33.62094 -32.50368 -31.05476 -29.93136 -28.50986 -26.17463 -24.55861 -23.03664 -22.54891 -20.92651 -19.88529 -19.35599 -16.65212 -16.11318 -15.31105 -15.01116 -14.53352 -14.46974 -14.27563 -14.00658 -13.80778 -13.08694 -12.91403 -12.63434 -12.14523 -12.04517 -11.92360 -11.66398 -11.41700 -11.10632 -11.05074 -11.00229 -10.87786 -10.82548 -10.57881 -10.32113 -10.01561 -9.64321 -9.28866 -9.07486 -8.34860 -8.28993 -7.63757 -5.96000 -3.98312 3.35344 3.39706 3.41992 3.83026 4.38491 4.55516 4.78147 4.93950 4.97214 5.03698 5.26915 5.29249 5.34826 5.39631 5.46436 5.58120 5.61180 5.66787 5.76746 5.79649 5.86936 5.90106 5.98633 6.02092 6.09326 6.21067 6.34495 6.38848 6.48914 6.58923 6.64761 7.03268 7.07171 7.08229 7.58317 7.65364 7.85689 7.96102 8.13746 8.48002 9.08915 9.64967 11.15385 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038257 B = 0.004567 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.712212 B = 6128.884935 C = 6661.749647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.051 3.949 3 N -0.538 5.538 4 C 0.053 3.947 5 C -0.111 4.111 6 C 0.085 3.915 7 N -0.536 5.536 8 C 0.024 3.976 9 C 0.059 3.941 10 C 0.028 3.972 11 C -0.522 4.522 12 H 0.052 0.948 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.110 4.110 20 C 0.060 3.940 21 H 0.059 0.941 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.029 0.971 26 H 0.082 0.918 27 H 0.027 0.973 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.027 0.973 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.014 0.986 34 H 0.064 0.936 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.024 0.976 38 H 0.261 0.739 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.028 0.972 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 -19.466 -1.961 19.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.077 4.077 3 N -0.263 5.263 4 C -0.075 4.075 5 C -0.149 4.149 6 C -0.024 4.024 7 N -0.260 5.260 8 C -0.124 4.124 9 C -0.067 4.067 10 C -0.009 4.009 11 C -0.561 4.561 12 H 0.071 0.929 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.148 4.148 20 C -0.069 4.069 21 H 0.078 0.922 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.047 0.953 26 H 0.100 0.900 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.032 0.968 34 H 0.083 0.917 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.046 0.954 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.721 -18.945 -2.971 19.254 hybrid contribution 0.001 0.100 2.350 2.352 sum -1.720 -18.845 -0.621 18.933 Atomic orbital electron populations 1.21949 0.95097 1.01659 1.02748 1.22064 0.95760 0.89448 1.00414 1.62028 1.03968 1.10033 1.50275 1.22229 0.98872 0.93773 0.92669 1.21696 0.95080 0.94459 1.03679 1.21611 0.95157 0.89444 0.96198 1.62138 1.05826 1.04818 1.53251 1.22410 0.88516 1.03044 0.98437 1.22401 0.97598 0.95407 0.91310 1.19089 0.96954 0.87578 0.97269 1.21167 1.30992 0.91204 1.12728 0.92939 1.24983 0.95461 0.98252 0.95564 1.69961 1.40279 1.12060 1.30960 0.86671 0.80156 0.79742 0.81486 1.20350 1.21278 1.20234 1.21693 0.98954 0.93012 1.01164 1.22069 0.87945 0.97757 0.99097 0.92248 0.91611 0.92409 0.90868 0.95322 0.90000 0.95441 0.91031 0.90076 0.95546 0.92266 0.90364 0.96759 0.91733 0.96595 0.96538 0.95722 0.92970 0.91608 0.90120 0.95359 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.16 37.16 0.34 -0.98 16 2 C 0.05 0.49 5.99 -3.82 -0.02 0.46 16 3 N -0.54 -6.35 4.81 -234.67 -1.13 -7.48 16 4 C 0.05 0.65 4.85 -3.84 -0.02 0.63 16 5 C -0.11 -1.64 5.10 -26.65 -0.14 -1.78 16 6 C 0.08 1.32 2.01 -67.59 -0.14 1.19 16 7 N -0.54 -10.08 4.63 -234.74 -1.09 -11.17 16 8 C 0.02 0.42 8.91 60.06 0.54 0.96 16 9 C 0.06 1.29 4.72 -3.82 -0.02 1.28 16 10 C 0.03 0.76 4.90 -27.88 -0.14 0.62 16 11 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 15 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.11 -1.46 4.93 -26.65 -0.13 -1.59 16 20 C 0.06 0.69 5.42 -3.84 -0.02 0.67 16 21 H 0.06 0.51 6.21 -51.93 -0.32 0.19 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.03 0.27 8.08 -51.93 -0.42 -0.15 16 26 H 0.08 0.92 5.81 -51.93 -0.30 0.61 16 27 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 1.10 6.35 -51.93 -0.33 0.78 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.88 6.30 -51.93 -0.33 0.55 16 32 H 0.08 1.52 6.30 -51.92 -0.33 1.19 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 1.38 5.90 -51.93 -0.31 1.07 16 35 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 36 H 0.02 0.46 6.47 -51.93 -0.34 0.12 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.07 0.82 6.50 -51.92 -0.34 0.48 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 LS Contribution 315.77 15.07 4.76 4.76 Total: -1.00 -30.18 315.77 -9.52 -39.69 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -7.62 Total: -3.91 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -0.16 Total: -12.29 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: -1.48 Total: -45.11 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.18 -9.52 -39.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042616556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.668 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds