Wall clock time and date at job start Thu Apr 9 2020 12:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46909 * 109.47025 * 2 1 4 4 C 1.46846 * 111.00162 * 45.78723 * 3 2 1 5 5 C 1.53030 * 109.52377 * 185.84294 * 4 3 2 6 6 C 1.53123 * 109.28009 * 300.82027 * 5 4 3 7 7 N 1.46901 * 109.52431 * 177.55805 * 6 5 4 8 8 C 1.46899 * 110.99608 * 184.27339 * 7 6 5 9 9 C 1.46901 * 110.99766 * 60.32024 * 7 6 5 10 10 C 1.52998 * 109.47087 * 189.99990 * 9 7 6 11 11 C 1.50705 * 109.47156 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99822 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99866 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00218 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 119.99908 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47550 * 59.99567 * 15 13 11 17 17 H 1.48496 * 109.47316 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47172 * 300.00018 * 15 13 11 19 19 C 1.53118 * 109.15585 * 57.65675 * 6 5 4 20 20 C 1.46846 * 111.00243 * 170.00251 * 3 2 1 21 21 H 1.09000 * 109.47102 * 300.00128 * 1 2 3 22 22 H 1.08999 * 109.47491 * 59.99991 * 1 2 3 23 23 H 1.09001 * 109.46965 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47102 * 239.99872 * 2 1 3 25 25 H 1.09003 * 109.47357 * 119.99499 * 2 1 3 26 26 H 1.08999 * 109.46373 * 305.86398 * 4 3 2 27 27 H 1.08998 * 109.45881 * 65.82485 * 4 3 2 28 28 H 1.09003 * 109.50272 * 180.88314 * 5 4 3 29 29 H 1.09003 * 109.50540 * 60.76497 * 5 4 3 30 30 H 1.08993 * 109.52379 * 297.75279 * 6 5 4 31 31 H 1.08994 * 109.47586 * 60.00445 * 8 7 6 32 32 H 1.09010 * 109.46664 * 180.02562 * 8 7 6 33 33 H 1.08997 * 109.46974 * 299.99654 * 8 7 6 34 34 H 1.09005 * 109.47400 * 309.99932 * 9 7 6 35 35 H 1.09001 * 109.46771 * 69.99784 * 9 7 6 36 36 H 1.09005 * 109.46954 * 300.00216 * 10 9 7 37 37 H 1.08994 * 109.47093 * 60.00275 * 10 9 7 38 38 H 0.96997 * 120.00336 * 179.97438 * 14 13 11 39 39 H 1.09008 * 109.50062 * 182.40805 * 19 6 5 40 40 H 1.09002 * 109.53946 * 62.30558 * 19 6 5 41 41 H 1.08998 * 109.45759 * 294.17597 * 20 3 2 42 42 H 1.09003 * 109.46299 * 54.15067 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.2938 2.1999 0.9826 5 6 1.7263 3.6622 0.8539 6 6 3.2353 3.7659 1.0921 7 7 3.6662 5.1587 0.9122 8 6 5.1252 5.2782 1.0337 9 6 2.9841 6.0476 1.8624 10 6 3.2623 7.5046 1.4876 11 6 2.5621 8.4165 2.4620 12 1 1.9769 7.9985 3.2677 13 6 2.6687 9.7842 2.3248 14 7 3.3810 10.2932 1.3433 15 14 1.8015 10.9144 3.5329 16 1 2.3040 10.6513 4.9053 17 1 2.0714 12.3286 3.1691 18 1 0.3388 10.6619 3.4845 19 6 3.9654 2.8707 0.0870 20 6 3.4680 1.4313 0.2380 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.2222 2.1206 0.7995 27 1 1.5177 1.8420 1.9875 28 1 1.1989 4.2642 1.5939 29 1 1.4900 4.0249 -0.1465 30 1 3.4673 3.4399 2.1059 31 1 5.6049 4.6631 0.2725 32 1 5.4171 6.3196 0.8968 33 1 5.4363 4.9411 2.0225 34 1 1.9106 5.8620 1.8272 35 1 3.3534 5.8546 2.8696 36 1 4.3359 7.6902 1.5228 37 1 2.8931 7.6975 0.4804 38 1 3.4557 11.2554 1.2466 39 1 5.0378 2.9071 0.2791 40 1 3.7649 3.2206 -0.9257 41 1 3.6817 1.0770 1.2464 42 1 3.9755 0.7939 -0.4861 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042616556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:56 Heat of formation + Delta-G solvation = -21.149222 kcal Electronic energy + Delta-G solvation = -17891.114651 eV Core-core repulsion = 15290.809388 eV Total energy + Delta-G solvation = -2600.305263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57485 -38.25747 -35.40715 -34.00649 -32.13772 -31.55649 -29.72297 -27.71759 -26.18288 -24.19565 -23.87127 -22.07717 -21.42426 -20.57026 -18.60996 -17.39165 -16.52529 -16.45169 -16.08110 -15.74382 -15.50193 -15.24096 -15.09051 -14.38467 -14.25071 -13.98391 -13.75579 -13.41879 -13.16994 -12.92416 -12.76960 -12.56557 -12.46667 -12.35840 -12.15309 -12.02921 -11.92168 -11.82965 -11.47073 -11.33518 -11.15264 -10.94954 -10.52366 -9.22770 -9.16072 -8.19313 -6.30990 1.39943 1.43445 1.51386 2.40587 2.95868 3.06146 3.13752 3.77804 3.89803 4.12127 4.14592 4.27089 4.30980 4.32792 4.46605 4.50153 4.55834 4.59202 4.64167 4.68000 4.72491 4.81792 4.87069 4.90765 4.98114 5.04564 5.09646 5.15045 5.19827 5.26512 5.32970 5.42364 5.48472 5.67040 5.80098 6.10746 6.16508 6.21582 6.34174 6.36655 6.85903 7.37967 8.92721 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038257 B = 0.004567 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.712212 B = 6128.884935 C = 6661.749647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.050 3.950 3 N -0.551 5.551 4 C 0.061 3.939 5 C -0.109 4.109 6 C 0.085 3.915 7 N -0.550 5.550 8 C 0.027 3.973 9 C 0.077 3.923 10 C 0.037 3.963 11 C -0.546 4.546 12 H 0.059 0.941 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.966 3.034 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.266 1.266 19 C -0.104 4.104 20 C 0.064 3.936 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.035 0.965 26 H 0.092 0.908 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.027 0.973 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.022 0.978 34 H 0.067 0.933 35 H 0.013 0.987 36 H -0.006 1.006 37 H -0.009 1.009 38 H 0.264 0.736 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.033 0.967 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 -21.102 -1.189 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.077 4.077 3 N -0.277 5.277 4 C -0.067 4.067 5 C -0.147 4.147 6 C -0.023 4.023 7 N -0.274 5.274 8 C -0.121 4.121 9 C -0.050 4.050 10 C 0.000 4.000 11 C -0.585 4.585 12 H 0.077 0.923 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.791 3.209 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.191 1.191 19 C -0.142 4.142 20 C -0.065 4.065 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.101 0.899 25 H 0.053 0.947 26 H 0.110 0.890 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.032 0.968 36 H 0.012 0.988 37 H 0.009 0.991 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.304 -20.611 -2.201 20.856 hybrid contribution 0.212 0.576 2.050 2.140 sum -2.091 -20.035 -0.150 20.145 Atomic orbital electron populations 1.21931 0.94404 1.02660 1.02224 1.22140 0.96363 0.88042 1.01135 1.62024 1.04134 1.11442 1.50087 1.22119 0.99548 0.91986 0.93082 1.21646 0.94522 0.96349 1.02184 1.21719 0.95977 0.87639 0.97012 1.62074 1.06475 1.06496 1.52316 1.22384 0.87902 1.01890 0.99878 1.22023 0.98138 0.93217 0.91647 1.18914 0.95114 0.90805 0.95191 1.21598 1.31403 0.92167 1.13322 0.92293 1.25962 0.96074 1.00062 0.97488 1.70105 1.41588 1.12604 1.32846 0.85486 0.79183 0.77262 0.79015 1.19180 1.20725 1.19090 1.21638 0.99341 0.93723 0.99454 1.22051 0.87973 0.96467 0.99977 0.92529 0.92331 0.90704 0.89925 0.94712 0.88960 0.95113 0.92205 0.91774 0.95551 0.89415 0.93188 0.95973 0.91450 0.96836 0.98758 0.99072 0.92734 0.90551 0.91382 0.94888 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.16 71.98 0.66 -1.59 16 2 C 0.05 0.82 5.99 86.30 0.52 1.34 16 3 N -0.55 -11.84 4.81 -896.36 -4.31 -16.14 16 4 C 0.06 1.40 4.85 86.32 0.42 1.82 16 5 C -0.11 -3.18 5.10 30.65 0.16 -3.02 16 6 C 0.08 2.58 2.01 45.00 0.09 2.67 16 7 N -0.55 -20.84 4.63 -896.57 -4.15 -25.00 16 8 C 0.03 0.95 8.91 127.69 1.14 2.09 16 9 C 0.08 3.43 4.72 86.30 0.41 3.84 16 10 C 0.04 2.06 4.90 29.85 0.15 2.20 16 11 C -0.55 -32.01 9.11 25.60 0.23 -31.78 16 12 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 13 C 0.00 0.13 5.46 84.65 0.46 0.59 16 14 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 15 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 C -0.10 -2.57 4.93 30.65 0.15 -2.42 16 20 C 0.06 1.30 5.42 86.33 0.47 1.77 16 21 H 0.06 0.85 6.21 -2.39 -0.01 0.83 16 22 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.03 0.54 8.08 -2.39 -0.02 0.52 16 26 H 0.09 1.92 5.81 -2.39 -0.01 1.91 16 27 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 1.85 6.35 -2.39 -0.02 1.84 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 2.51 6.30 -2.39 -0.02 2.50 16 32 H 0.05 2.01 6.30 -2.38 -0.02 1.99 16 33 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 2.93 5.90 -2.38 -0.01 2.92 16 35 H 0.01 0.60 8.12 -2.39 -0.02 0.58 16 36 H -0.01 -0.35 6.47 -2.38 -0.02 -0.36 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.08 1.72 6.50 -2.38 -0.02 1.71 16 40 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 1.56 8.12 -2.39 -0.02 1.54 16 Total: -1.00 -65.43 315.77 -0.34 -65.78 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.96 Total: 8.59 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 4.85 Total: -22.50 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -8.18 Total: -98.79 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -65.43 -0.34 -65.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042616556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.627 kcal (2) G-P(sol) polarization free energy of solvation -65.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds