Wall clock time and date at job start Thu Apr 9 2020 12:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38307 * 119.95914 * 2 1 4 4 C 1.38272 * 120.14800 * 180.02562 * 3 2 1 5 5 C 1.38121 * 120.07290 * 0.25223 * 4 3 2 6 6 C 1.38895 * 119.92572 * 359.49145 * 5 4 3 7 7 N 1.39674 * 120.07235 * 180.27618 * 6 5 4 8 8 S 1.65597 * 120.00296 * 75.42162 * 7 6 5 9 9 O 1.42097 * 106.40503 * 177.76139 * 8 7 6 10 10 O 1.42105 * 106.40102 * 310.68749 * 8 7 6 11 11 C 1.76206 * 107.21710 * 64.22435 * 8 7 6 12 12 H 1.07999 * 119.99942 * 4.87402 * 11 8 7 13 13 C 1.37875 * 119.99847 * 184.87493 * 11 8 7 14 14 N 1.31512 * 120.00264 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99987 * 179.97438 * 13 11 8 16 16 H 1.48508 * 109.46900 * 60.00313 * 15 13 11 17 17 H 1.48496 * 109.47251 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47575 * 300.00568 * 15 13 11 19 19 C 1.38081 * 119.96301 * 180.02562 * 2 1 3 20 20 H 1.09000 * 109.46812 * 90.00621 * 1 2 3 21 21 H 1.08998 * 109.47135 * 210.00512 * 1 2 3 22 22 H 1.08995 * 109.47302 * 330.00269 * 1 2 3 23 23 H 1.07995 * 119.92657 * 0.03538 * 3 2 1 24 24 H 1.07997 * 119.95994 * 179.97438 * 4 3 2 25 25 H 1.08006 * 120.03915 * 179.74441 * 5 4 3 26 26 H 0.97002 * 119.99844 * 255.41813 * 7 6 5 27 27 H 0.97000 * 120.00391 * 180.02562 * 14 13 11 28 28 H 1.07998 * 120.03976 * 359.96457 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5804 1.2028 -0.0005 5 6 4.2765 0.0098 -0.0063 6 6 3.5860 -1.1953 -0.0009 7 7 4.2868 -2.4035 -0.0010 8 16 5.0199 -2.9355 1.3853 9 8 5.5941 -4.1981 1.0765 10 8 5.7741 -1.8402 1.8861 11 6 3.7465 -3.2430 2.5638 12 1 2.7099 -3.1491 2.2756 13 6 4.0735 -3.6034 3.8538 14 7 5.3357 -3.7172 4.2049 15 14 2.7236 -3.9286 5.1033 16 1 1.8654 -5.0428 4.6262 17 1 3.3334 -4.2973 6.4062 18 1 1.8987 -2.7052 5.2707 19 6 2.1966 -1.1963 -0.0005 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 1.6558 2.1324 0.0006 24 1 4.1166 2.1403 -0.0010 25 1 5.3565 0.0141 -0.0109 26 1 4.3440 -2.9310 -0.8130 27 1 5.5658 -3.9712 5.1123 28 1 1.6567 -2.1316 -0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509552.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:02 Heat of formation + Delta-G solvation = -75.230455 kcal Electronic energy + Delta-G solvation = -15231.046484 eV Core-core repulsion = 12565.931008 eV Total energy + Delta-G solvation = -2665.115476 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.08990 -35.26642 -34.55503 -33.98907 -33.06687 -32.03298 -28.68970 -26.59648 -26.11181 -22.03809 -21.02278 -19.05312 -17.44157 -16.84182 -16.15073 -15.75495 -15.07148 -14.89056 -13.93861 -13.76352 -13.51675 -13.35268 -12.76102 -12.17750 -12.00736 -11.77551 -11.45249 -11.19847 -11.17743 -10.94840 -10.62469 -10.56205 -10.33037 -10.20883 -9.32044 -9.23201 -8.78574 -8.39592 -8.11851 -6.69975 -5.31665 1.59369 1.74560 2.33420 3.09357 3.13203 3.19120 4.05916 4.08309 4.64969 4.67339 5.09763 5.18951 5.42978 5.52756 5.69990 5.74143 5.79101 5.88043 5.98767 6.09122 6.40474 6.54887 6.65855 6.83720 6.86772 6.98020 7.29232 7.36359 7.92285 7.96869 8.89003 10.24469 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.010025 C = 0.008080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.390139 B = 2792.294429 C = 3464.388384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.088 4.088 3 C -0.128 4.128 4 C -0.112 4.112 5 C -0.114 4.114 6 C 0.165 3.835 7 N -1.088 6.088 8 S 2.708 3.292 9 O -1.005 7.005 10 O -0.994 6.994 11 C -1.015 5.015 12 H 0.102 0.898 13 C 0.134 3.866 14 N -0.845 5.845 15 Si 0.920 3.080 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.264 1.264 19 C -0.118 4.118 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.118 0.882 24 H 0.122 0.878 25 H 0.130 0.870 26 H 0.409 0.591 27 H 0.291 0.709 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.097 7.085 -7.230 12.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.130 4.130 5 C -0.135 4.135 6 C 0.070 3.930 7 N -0.838 5.838 8 S 2.809 3.191 9 O -0.995 6.995 10 O -0.984 6.984 11 C -1.149 5.149 12 H 0.121 0.879 13 C -0.084 4.084 14 N -0.475 5.475 15 Si 0.744 3.256 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.188 1.188 19 C -0.139 4.139 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.136 0.864 24 H 0.140 0.860 25 H 0.148 0.852 26 H 0.244 0.756 27 H 0.102 0.898 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.968 7.001 -6.848 12.020 hybrid contribution -1.198 -0.481 0.599 1.423 sum -8.166 6.520 -6.250 12.176 Atomic orbital electron populations 1.20756 0.91417 1.02726 1.01866 1.19728 0.95803 0.92871 1.00469 1.20963 0.94228 0.97173 1.02316 1.20974 0.94077 0.97610 1.00387 1.21566 1.00858 0.91741 0.99317 1.17240 0.90228 0.85593 0.99911 1.53859 1.71209 1.29141 1.29583 1.00768 0.74462 0.72537 0.71348 1.93386 1.78149 1.43431 1.84557 1.93366 1.70898 1.55705 1.78398 1.30431 1.11180 1.62405 1.10882 0.87937 1.24729 0.96538 0.89199 0.97964 1.69888 1.17290 1.38422 1.21884 0.86202 0.80994 0.79710 0.78689 1.18823 1.20072 1.18801 1.21347 0.93551 0.98043 1.00980 0.91536 0.91521 0.91742 0.86400 0.85974 0.85189 0.75627 0.89820 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 36.01 0.36 -0.88 15 2 C -0.09 -1.30 5.88 -104.65 -0.62 -1.91 15 3 C -0.13 -1.80 9.70 -39.54 -0.38 -2.18 15 4 C -0.11 -1.70 10.04 -39.61 -0.40 -2.10 15 5 C -0.11 -2.09 9.30 -39.38 -0.37 -2.46 15 6 C 0.17 3.19 5.79 -83.78 -0.49 2.71 15 7 N -1.09 -22.41 5.70 32.41 0.18 -22.23 15 8 S 2.71 72.67 5.02 -107.50 -0.54 72.13 15 9 O -1.00 -29.45 18.02 -57.17 -1.03 -30.48 15 10 O -0.99 -29.15 16.99 -57.17 -0.97 -30.12 15 11 C -1.02 -28.30 9.66 30.60 0.30 -28.01 15 12 H 0.10 2.62 7.81 -52.49 -0.41 2.21 15 13 C 0.13 3.77 5.46 -17.82 -0.10 3.67 15 14 N -0.85 -25.03 13.10 55.43 0.73 -24.30 15 15 Si 0.92 20.81 29.54 -169.99 -5.02 15.78 15 16 H -0.26 -5.74 7.11 56.52 0.40 -5.34 15 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 18 H -0.26 -5.78 7.11 56.52 0.40 -5.37 15 19 C -0.12 -2.02 9.62 -39.38 -0.38 -2.40 15 20 H 0.07 0.64 8.14 -51.93 -0.42 0.21 15 21 H 0.07 0.74 8.08 -51.93 -0.42 0.32 15 22 H 0.06 0.63 8.08 -51.93 -0.42 0.21 15 23 H 0.12 1.29 8.06 -52.49 -0.42 0.87 15 24 H 0.12 1.50 8.06 -52.49 -0.42 1.08 15 25 H 0.13 2.41 7.96 -52.48 -0.42 1.99 15 26 H 0.41 7.07 8.95 -34.47 -0.31 6.76 15 27 H 0.29 7.77 8.31 -40.82 -0.34 7.43 15 28 H 0.13 1.99 8.06 -52.49 -0.42 1.57 15 LS Contribution 266.67 15.07 4.02 4.02 Total: -1.00 -34.85 266.67 -7.50 -42.35 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -2.80 Total: 6.41 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: -2.07 Total: -33.56 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.91 Total: -46.53 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -2.00 Total: -60.60 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 72.67 SS G_CDS: -0.54 Total: 72.13 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.85 -7.50 -42.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509552.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.881 kcal (2) G-P(sol) polarization free energy of solvation -34.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds