Wall clock time and date at job start Thu Apr 9 2020 12:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38307 * 119.95914 * 2 1 4 4 C 1.38272 * 120.14800 * 180.02562 * 3 2 1 5 5 C 1.38121 * 120.07290 * 0.25223 * 4 3 2 6 6 C 1.38895 * 119.92572 * 359.49145 * 5 4 3 7 7 N 1.39674 * 120.07235 * 180.27618 * 6 5 4 8 8 S 1.65597 * 120.00296 * 75.42162 * 7 6 5 9 9 O 1.42097 * 106.40503 * 177.76139 * 8 7 6 10 10 O 1.42105 * 106.40102 * 310.68749 * 8 7 6 11 11 C 1.76206 * 107.21710 * 64.22435 * 8 7 6 12 12 H 1.07999 * 119.99942 * 4.87402 * 11 8 7 13 13 C 1.37875 * 119.99847 * 184.87493 * 11 8 7 14 14 N 1.31512 * 120.00264 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99987 * 179.97438 * 13 11 8 16 16 H 1.48508 * 109.46900 * 60.00313 * 15 13 11 17 17 H 1.48496 * 109.47251 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47575 * 300.00568 * 15 13 11 19 19 C 1.38081 * 119.96301 * 180.02562 * 2 1 3 20 20 H 1.09000 * 109.46812 * 90.00621 * 1 2 3 21 21 H 1.08998 * 109.47135 * 210.00512 * 1 2 3 22 22 H 1.08995 * 109.47302 * 330.00269 * 1 2 3 23 23 H 1.07995 * 119.92657 * 0.03538 * 3 2 1 24 24 H 1.07997 * 119.95994 * 179.97438 * 4 3 2 25 25 H 1.08006 * 120.03915 * 179.74441 * 5 4 3 26 26 H 0.97002 * 119.99844 * 255.41813 * 7 6 5 27 27 H 0.97000 * 120.00391 * 180.02562 * 14 13 11 28 28 H 1.07998 * 120.03976 * 359.96457 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5804 1.2028 -0.0005 5 6 4.2765 0.0098 -0.0063 6 6 3.5860 -1.1953 -0.0009 7 7 4.2868 -2.4035 -0.0010 8 16 5.0199 -2.9355 1.3853 9 8 5.5941 -4.1981 1.0765 10 8 5.7741 -1.8402 1.8861 11 6 3.7465 -3.2430 2.5638 12 1 2.7099 -3.1491 2.2756 13 6 4.0735 -3.6034 3.8538 14 7 5.3357 -3.7172 4.2049 15 14 2.7236 -3.9286 5.1033 16 1 1.8654 -5.0428 4.6262 17 1 3.3334 -4.2973 6.4062 18 1 1.8987 -2.7052 5.2707 19 6 2.1966 -1.1963 -0.0005 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 1.6558 2.1324 0.0006 24 1 4.1166 2.1403 -0.0010 25 1 5.3565 0.0141 -0.0109 26 1 4.3440 -2.9310 -0.8130 27 1 5.5658 -3.9712 5.1123 28 1 1.6567 -2.1316 -0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509552.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:01 Heat of formation + Delta-G solvation = -101.550079 kcal Electronic energy + Delta-G solvation = -15232.187788 eV Core-core repulsion = 12565.931008 eV Total energy + Delta-G solvation = -2666.256780 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.056 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.36496 -37.46147 -36.22263 -36.03920 -35.17333 -33.20309 -30.05850 -28.29499 -27.63873 -23.33269 -22.31704 -21.09731 -19.37341 -18.48154 -18.08700 -17.15142 -16.83548 -16.37322 -15.82740 -15.65171 -14.78347 -14.47888 -14.01837 -13.95245 -13.45284 -13.19539 -13.06574 -13.00748 -12.66132 -12.57707 -12.48898 -12.33389 -12.19201 -12.10043 -11.25206 -11.11366 -10.67350 -9.66145 -9.43563 -8.77588 -7.51049 0.04725 0.50027 0.58920 1.32441 1.35129 1.48031 2.19073 2.56063 2.81317 2.89209 3.62966 4.03072 4.08648 4.23117 4.32913 4.51222 4.57313 4.63007 4.90640 4.94016 5.04130 5.17167 5.29084 5.38305 5.56720 5.62534 5.70714 5.86719 6.06675 6.40113 6.75232 8.19058 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.010025 C = 0.008080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.390139 B = 2792.294429 C = 3464.388384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.086 4.086 3 C -0.119 4.119 4 C -0.111 4.111 5 C -0.143 4.143 6 C 0.128 3.872 7 N -1.072 6.072 8 S 2.713 3.287 9 O -1.042 7.042 10 O -1.029 7.029 11 C -1.035 5.035 12 H 0.119 0.881 13 C 0.071 3.929 14 N -0.893 5.893 15 Si 0.990 3.010 16 H -0.249 1.249 17 H -0.262 1.262 18 H -0.250 1.250 19 C -0.132 4.132 20 H 0.087 0.913 21 H 0.065 0.935 22 H 0.084 0.916 23 H 0.159 0.841 24 H 0.151 0.849 25 H 0.113 0.887 26 H 0.421 0.579 27 H 0.300 0.700 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.181 8.509 -6.980 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.129 4.129 5 C -0.164 4.164 6 C 0.033 3.967 7 N -0.827 5.827 8 S 2.816 3.184 9 O -1.032 7.032 10 O -1.019 7.019 11 C -1.169 5.169 12 H 0.137 0.863 13 C -0.142 4.142 14 N -0.524 5.524 15 Si 0.807 3.193 16 H -0.172 1.172 17 H -0.186 1.186 18 H -0.173 1.173 19 C -0.153 4.153 20 H 0.105 0.895 21 H 0.084 0.916 22 H 0.103 0.897 23 H 0.177 0.823 24 H 0.169 0.831 25 H 0.131 0.869 26 H 0.259 0.741 27 H 0.110 0.890 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.035 8.422 -6.628 14.682 hybrid contribution -0.272 -0.812 0.404 0.947 sum -10.307 7.610 -6.224 14.244 Atomic orbital electron populations 1.20843 0.88498 1.03760 1.03520 1.20218 0.97910 0.92120 0.98468 1.21462 0.93758 0.98652 0.99847 1.21344 0.95080 0.97462 0.99053 1.21659 1.00460 0.93002 1.01296 1.17562 0.91340 0.84859 1.02905 1.53100 1.71139 1.30119 1.28301 1.00247 0.74581 0.71483 0.72094 1.93321 1.79419 1.45098 1.85390 1.93310 1.72310 1.56479 1.79789 1.30762 1.12073 1.62451 1.11605 0.86267 1.26022 0.99318 0.88432 1.00449 1.69984 1.19774 1.39628 1.23022 0.85172 0.77614 0.80468 0.76016 1.17226 1.18596 1.17345 1.21524 0.92599 0.99654 1.01522 0.89454 0.91553 0.89695 0.82319 0.83117 0.86896 0.74130 0.89025 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 10.01 71.24 0.71 -1.28 15 2 C -0.09 -2.28 5.88 -19.89 -0.12 -2.40 15 3 C -0.12 -2.89 9.70 22.29 0.22 -2.68 15 4 C -0.11 -3.15 10.04 22.25 0.22 -2.93 15 5 C -0.14 -5.29 9.30 22.40 0.21 -5.08 15 6 C 0.13 4.96 5.79 38.22 0.22 5.18 15 7 N -1.07 -45.53 5.70 -51.36 -0.29 -45.82 15 8 S 2.71 150.72 5.02 -56.49 -0.28 150.43 15 9 O -1.04 -63.55 18.02 -128.00 -2.31 -65.85 15 10 O -1.03 -62.98 16.99 -128.00 -2.17 -65.15 15 11 C -1.03 -58.21 9.66 67.73 0.65 -57.56 15 12 H 0.12 6.06 7.81 -2.91 -0.02 6.04 15 13 C 0.07 3.99 5.46 84.65 0.46 4.45 15 14 N -0.89 -53.92 13.10 21.45 0.28 -53.64 15 15 Si 0.99 41.59 29.54 68.60 2.03 43.61 15 16 H -0.25 -9.77 7.11 99.48 0.71 -9.06 15 17 H -0.26 -10.29 7.11 99.48 0.71 -9.59 15 18 H -0.25 -9.86 7.11 99.48 0.71 -9.16 15 19 C -0.13 -4.35 9.62 22.40 0.22 -4.14 15 20 H 0.09 1.27 8.14 -2.39 -0.02 1.25 15 21 H 0.07 1.23 8.08 -2.39 -0.02 1.21 15 22 H 0.08 1.23 8.08 -2.39 -0.02 1.21 15 23 H 0.16 2.58 8.06 -2.91 -0.02 2.55 15 24 H 0.15 3.30 8.06 -2.91 -0.02 3.28 15 25 H 0.11 4.41 7.96 -2.91 -0.02 4.39 15 26 H 0.42 15.14 8.95 -96.75 -0.87 14.28 15 27 H 0.30 16.23 8.31 -92.71 -0.77 15.46 15 28 H 0.13 4.04 8.06 -2.91 -0.02 4.01 15 Total: -1.00 -77.32 266.67 0.36 -76.96 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.31 Total: 25.88 kcal Atomic # 6 Polarization: -69.22 SS G_CDS: 2.80 Total: -66.42 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -0.01 Total: -99.46 kcal Atomic # 8 Polarization: -126.52 SS G_CDS: -4.48 Total: -131.01 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 16 Polarization: 150.72 SS G_CDS: -0.28 Total: 150.43 kcal Total: -77.32 0.36 -76.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509552.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.585 kcal (2) G-P(sol) polarization free energy of solvation -77.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds