Wall clock time and date at job start Thu Apr 9 2020 12:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 119.99828 * 2 1 4 4 H 1.48499 * 109.47522 * 270.00410 * 3 2 1 5 5 H 1.48504 * 109.47097 * 30.00532 * 3 2 1 6 6 H 1.48507 * 109.47328 * 150.00259 * 3 2 1 7 7 C 1.38796 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00101 * 0.02562 * 7 2 1 9 9 S 1.76204 * 120.00054 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00151 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47064 * 179.97438 * 14 13 11 16 16 C 1.34515 * 125.79060 * 89.99944 * 15 14 13 17 17 C 1.41380 * 106.83832 * 179.97438 * 16 15 14 18 18 C 1.34506 * 106.84493 * 359.97438 * 17 16 15 19 19 O 1.34306 * 125.78568 * 269.69282 * 15 14 13 20 20 H 0.96997 * 120.00635 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46925 * 60.00021 * 10 9 7 22 22 H 1.09002 * 109.47115 * 300.00178 * 10 9 7 23 23 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 24 24 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 25 25 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 26 26 H 1.07996 * 126.58016 * 0.03378 * 16 15 14 27 27 H 1.08006 * 126.57610 * 179.97438 * 17 16 15 28 28 H 1.08005 * 125.79499 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2019 -0.0012 10 6 4.0867 -2.9844 -0.0025 11 6 5.5732 -3.2324 -0.0026 12 8 6.3441 -2.2961 -0.0024 13 7 6.0458 -4.4945 -0.0041 14 6 7.4909 -4.7355 -0.0048 15 6 7.7526 -6.2196 -0.0057 16 6 7.8888 -6.9937 -1.0974 17 6 8.1219 -8.3107 -0.6391 18 6 8.1147 -8.2626 0.7051 19 8 7.8952 -6.9927 1.0832 20 1 -0.4851 0.8400 0.0004 21 1 3.6435 -3.4309 -0.8927 22 1 3.6441 -3.4321 0.8873 23 1 5.4293 -5.2433 -0.0047 24 1 7.9335 -4.2876 -0.8944 25 1 7.9341 -4.2894 0.8855 26 1 7.8322 -6.6709 -2.1264 27 1 8.2760 -9.1873 -1.2509 28 1 8.2639 -9.1021 1.3681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046018649.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:13 Heat of formation + Delta-G solvation = -47.982916 kcal Electronic energy + Delta-G solvation = -14025.446487 eV Core-core repulsion = 11361.512553 eV Total energy + Delta-G solvation = -2663.933934 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.54895 -40.64598 -36.15816 -34.66950 -33.93917 -32.20809 -30.25905 -27.87587 -26.56238 -22.70849 -21.92442 -21.58598 -19.96820 -18.61187 -17.90181 -17.29998 -17.06800 -16.73114 -16.66884 -15.64523 -15.38326 -14.93360 -14.80173 -14.45015 -13.76756 -13.60006 -13.54438 -13.33754 -13.02878 -12.94994 -12.65374 -11.86675 -11.20247 -11.16667 -10.87965 -10.54262 -10.28270 -9.53817 -8.99580 -8.51094 -6.22173 0.57324 1.01182 1.32354 1.47084 1.50629 1.54440 1.67333 1.97461 2.25258 2.38326 2.72492 2.87041 3.59671 3.83806 4.10871 4.11727 4.22727 4.36838 4.46615 4.52068 4.88265 5.00151 5.12838 5.22594 5.56494 5.71051 6.11944 6.15830 6.35427 6.93840 7.08931 8.61210 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.066165 B = 0.004188 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.082826 B = 6684.514505 C = 6914.398091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.044 3.956 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.236 1.236 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.173 6.173 10 C -0.112 4.112 11 C 0.540 3.460 12 O -0.558 6.558 13 N -0.712 5.712 14 C 0.206 3.794 15 C -0.054 4.054 16 C -0.184 4.184 17 C -0.229 4.229 18 C -0.027 4.027 19 O -0.191 6.191 20 H 0.277 0.723 21 H 0.116 0.884 22 H 0.114 0.886 23 H 0.416 0.584 24 H 0.104 0.896 25 H 0.077 0.923 26 H 0.161 0.839 27 H 0.172 0.828 28 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.313 -17.475 -0.501 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.160 1.160 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.054 5.946 10 C -0.263 4.263 11 C 0.326 3.674 12 O -0.436 6.436 13 N -0.367 5.367 14 C 0.083 3.917 15 C -0.104 4.104 16 C -0.205 4.205 17 C -0.248 4.248 18 C -0.095 4.095 19 O -0.087 6.087 20 H 0.086 0.914 21 H 0.134 0.866 22 H 0.132 0.868 23 H 0.253 0.747 24 H 0.122 0.878 25 H 0.096 0.904 26 H 0.179 0.821 27 H 0.189 0.811 28 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 17.415 -15.726 -0.201 23.466 hybrid contribution -1.443 -0.850 -0.207 1.688 sum 15.972 -16.576 -0.408 23.023 Atomic orbital electron populations 1.70014 1.07312 1.29035 1.49105 1.25586 0.95308 1.02339 0.92900 0.85851 0.80670 0.79502 0.80241 1.18638 1.18369 1.16007 1.22464 0.90264 0.96708 1.58284 0.91948 1.84689 1.06413 1.05922 1.97595 1.23269 0.95551 0.99801 1.07639 1.19926 0.89539 0.82864 0.75100 1.90702 1.59220 1.43579 1.50077 1.45841 1.07899 1.07207 1.75719 1.19541 0.81324 0.86387 1.04416 1.22144 1.09914 0.93418 0.84940 1.22018 1.04836 0.93668 0.99931 1.22223 1.08511 0.98730 0.95343 1.24927 1.02910 0.84611 0.97048 1.84049 1.69788 1.19498 1.35381 0.91370 0.86593 0.86809 0.74741 0.87763 0.90424 0.82088 0.81070 0.74487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.83 13.97 21.65 0.30 -55.53 15 2 C 0.04 2.59 5.50 84.86 0.47 3.05 15 3 Si 0.92 44.93 27.74 68.60 1.90 46.83 15 4 H -0.26 -12.51 7.11 99.48 0.71 -11.80 15 5 H -0.26 -11.95 7.11 99.48 0.71 -11.24 15 6 H -0.24 -11.55 6.74 99.48 0.67 -10.88 15 7 C -0.53 -30.79 10.04 67.95 0.68 -30.11 15 8 H 0.06 3.82 8.03 -2.91 -0.02 3.80 15 9 S -0.17 -8.68 18.55 -56.49 -1.05 -9.73 15 10 C -0.11 -4.16 6.16 71.24 0.44 -3.73 15 11 C 0.54 18.28 7.85 87.66 0.69 18.97 15 12 O -0.56 -23.28 15.86 -3.03 -0.05 -23.33 15 13 N -0.71 -17.23 5.55 -466.78 -2.59 -19.82 15 14 C 0.21 4.47 6.20 85.63 0.53 5.00 15 15 C -0.05 -1.05 6.69 24.83 0.17 -0.88 15 16 C -0.18 -3.06 10.81 22.19 0.24 -2.82 15 17 C -0.23 -3.09 10.91 22.19 0.24 -2.85 15 18 C -0.03 -0.36 12.09 66.97 0.81 0.45 15 19 O -0.19 -3.71 10.65 -2.58 -0.03 -3.74 15 20 H 0.28 15.58 8.31 -92.71 -0.77 14.81 15 21 H 0.12 3.94 8.14 -2.39 -0.02 3.92 15 22 H 0.11 3.92 8.14 -2.39 -0.02 3.90 15 23 H 0.42 8.03 8.46 -92.71 -0.78 7.24 15 24 H 0.10 2.17 8.14 -2.39 -0.02 2.15 15 25 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 26 H 0.16 2.24 8.06 -2.91 -0.02 2.21 15 27 H 0.17 1.46 8.06 -2.91 -0.02 1.43 15 28 H 0.24 1.06 8.06 -2.91 -0.02 1.04 15 Total: -1.00 -72.97 271.06 3.11 -69.86 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.36 Total: 8.37 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 4.26 Total: -12.92 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -2.29 Total: -75.35 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.08 Total: -27.06 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.83 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.05 Total: -9.73 kcal Total: -72.97 3.11 -69.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046018649.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.875 kcal (2) G-P(sol) polarization free energy of solvation -72.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds