Wall clock time and date at job start Thu Apr 9 2020 12:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99665 * 2 1 4 4 H 1.48496 * 109.47141 * 270.00223 * 3 2 1 5 5 H 1.48498 * 109.47146 * 30.00226 * 3 2 1 6 6 H 1.48505 * 109.47125 * 149.99787 * 3 2 1 7 7 C 1.37870 * 120.00475 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00685 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99752 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.47111 * 179.97438 * 9 7 2 11 11 C 1.35951 * 116.99973 * 179.97438 * 10 9 7 12 12 C 1.38729 * 120.03053 * 0.27130 * 11 10 9 13 13 C 1.38124 * 119.96971 * 180.27923 * 12 11 10 14 14 C 1.38478 * 120.02983 * 359.44338 * 13 12 11 15 15 F 1.35100 * 119.97273 * 180.25982 * 14 13 12 16 16 C 1.38432 * 120.06115 * 0.28163 * 14 13 12 17 17 C 1.38174 * 120.02667 * 359.97438 * 16 14 13 18 18 N 1.48013 * 120.01254 * 179.97438 * 17 16 14 19 19 O 1.21798 * 119.99970 * 359.97438 * 18 17 16 20 20 O 1.21798 * 119.99644 * 180.02562 * 18 17 16 21 21 H 0.97000 * 120.00186 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47426 * 59.99478 * 9 7 2 23 23 H 1.09004 * 109.46907 * 299.98949 * 9 7 2 24 24 H 1.07998 * 120.01322 * 0.02562 * 12 11 10 25 25 H 1.08002 * 119.98881 * 179.72848 * 13 12 11 26 26 H 1.07997 * 119.98756 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0005 11 6 1.6602 -4.8415 0.0011 12 6 0.2850 -5.0241 -0.0041 13 6 -0.2415 -6.3010 0.0023 14 6 0.6026 -7.3987 0.0022 15 9 0.0863 -8.6472 0.0032 16 6 1.9751 -7.2181 0.0016 17 6 2.5045 -5.9418 0.0006 18 7 3.9720 -5.7489 0.0005 19 8 4.7132 -6.7154 0.0018 20 8 4.4383 -4.6238 0.0000 21 1 -0.4850 0.8400 0.0004 22 1 0.6248 -2.5570 -0.8896 23 1 0.6243 -2.5567 0.8904 24 1 -0.3735 -4.1681 -0.0090 25 1 -1.3121 -6.4434 0.0027 26 1 2.6323 -8.0750 0.0020 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052065142.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:19 Heat of formation + Delta-G solvation = -65.431409 kcal Electronic energy + Delta-G solvation = -16644.076840 eV Core-core repulsion = 13413.173106 eV Total energy + Delta-G solvation = -3230.903733 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.058 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.04132 -41.77790 -39.80287 -37.21015 -36.00478 -33.11790 -32.03209 -29.95791 -27.81948 -26.24555 -23.98182 -22.28860 -21.90976 -19.32228 -18.36105 -17.62534 -17.16202 -16.97559 -16.49970 -16.13874 -15.78847 -15.04100 -14.90408 -14.56584 -13.92835 -13.32382 -12.75300 -12.41303 -12.09398 -11.60605 -11.16012 -11.12890 -11.10285 -10.67184 -10.66701 -10.50260 -10.32190 -9.72964 -9.51976 -8.76952 -8.19294 -6.40198 -4.44188 0.05885 0.94207 1.55772 1.72524 3.18959 3.21458 3.24213 3.28282 3.51781 3.97462 4.23061 4.42590 4.54847 4.81747 4.97734 4.98385 5.27144 5.55006 5.80935 5.86035 6.31239 6.42144 6.73862 6.78350 7.44884 7.69982 7.94559 8.09465 8.67536 9.22171 10.70980 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.029961 B = 0.006571 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.324381 B = 4260.207559 C = 5179.386299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.063 3.937 3 Si 0.917 3.083 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.079 0.921 9 C 0.182 3.818 10 O -0.269 6.269 11 C 0.213 3.787 12 C -0.187 4.187 13 C -0.058 4.058 14 C 0.041 3.959 15 F -0.133 7.133 16 C -0.057 4.057 17 C -0.079 4.079 18 N 0.039 4.961 19 O -0.198 6.198 20 O -0.117 6.117 21 H 0.269 0.731 22 H 0.031 0.969 23 H 0.031 0.969 24 H 0.167 0.833 25 H 0.152 0.848 26 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.989 -11.307 0.003 11.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.743 3.257 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.097 0.903 9 C 0.111 3.889 10 O -0.178 6.178 11 C 0.159 3.841 12 C -0.206 4.206 13 C -0.077 4.077 14 C 0.021 3.979 15 F -0.111 7.111 16 C -0.077 4.077 17 C -0.165 4.165 18 N 0.556 4.444 19 O -0.403 6.403 20 O -0.342 6.342 21 H 0.079 0.921 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.185 0.815 25 H 0.170 0.830 26 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.635 -11.292 0.006 11.595 hybrid contribution 0.257 0.675 -0.010 0.722 sum -2.379 -10.617 -0.004 10.880 Atomic orbital electron populations 1.69924 1.06192 1.27987 1.49310 1.24927 0.95085 0.99679 0.94308 0.86172 0.79729 0.81221 0.78556 1.20158 1.20899 1.19183 1.20949 0.94780 0.87907 1.52638 0.90305 1.21053 0.88707 0.81619 0.97561 1.86526 1.38843 1.10550 1.81830 1.19014 0.91058 0.86841 0.87168 1.21455 0.93387 0.98964 1.06769 1.21366 1.01210 0.90799 0.94356 1.16989 0.90387 0.80220 1.10342 1.91520 1.86862 1.38133 1.94633 1.20590 0.94701 0.96143 0.96282 1.20127 0.80222 0.93607 1.22497 1.43204 1.02578 1.00722 0.97877 1.94469 1.56784 1.33079 1.55948 1.94680 1.78823 1.09500 1.51213 0.92132 0.95161 0.95138 0.81511 0.82988 0.81950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 13.29 55.43 0.74 -23.58 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.92 20.52 29.54 -169.99 -5.02 15.50 15 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 7 C -0.53 -14.11 9.43 -34.44 -0.32 -14.44 15 8 H 0.08 2.15 7.81 -52.49 -0.41 1.74 15 9 C 0.18 4.36 4.49 36.01 0.16 4.52 15 10 O -0.27 -5.99 8.13 -41.73 -0.34 -6.33 15 11 C 0.21 3.88 6.67 -39.24 -0.26 3.62 15 12 C -0.19 -2.77 9.04 -39.44 -0.36 -3.13 15 13 C -0.06 -0.70 10.02 -39.53 -0.40 -1.09 15 14 C 0.04 0.52 7.30 -39.42 -0.29 0.23 15 15 F -0.13 -1.61 17.27 2.25 0.04 -1.57 15 16 C -0.06 -0.80 9.53 -39.53 -0.38 -1.17 15 17 C -0.08 -1.36 6.86 -79.81 -0.55 -1.91 15 18 N 0.04 0.75 4.45 34.03 0.15 0.90 15 19 O -0.20 -3.67 18.45 -29.46 -0.54 -4.22 15 20 O -0.12 -2.54 17.24 -36.50 -0.63 -3.17 15 21 H 0.27 6.88 8.31 -40.82 -0.34 6.54 15 22 H 0.03 0.73 7.65 -51.93 -0.40 0.33 15 23 H 0.03 0.73 7.67 -51.93 -0.40 0.34 15 24 H 0.17 2.46 6.30 -52.49 -0.33 2.13 15 25 H 0.15 1.32 8.06 -52.49 -0.42 0.90 15 26 H 0.16 1.96 7.61 -52.49 -0.40 1.56 15 LS Contribution 251.89 15.07 3.80 3.80 Total: -1.00 -28.24 251.89 -5.79 -34.03 By element: Atomic # 1 Polarization: -2.04 SS G_CDS: -1.49 Total: -3.53 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -2.49 Total: -11.82 kcal Atomic # 7 Polarization: -23.57 SS G_CDS: 0.89 Total: -22.68 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -1.51 Total: -13.72 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.24 -5.79 -34.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052065142.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.404 kcal (2) G-P(sol) polarization free energy of solvation -28.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds