Wall clock time and date at job start Thu Apr 9 2020 12:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46893 * 111.00301 * 2 1 4 4 C 1.46907 * 110.99592 * 123.95056 * 2 1 3 5 5 C 1.52998 * 109.46978 * 66.04658 * 4 2 1 6 6 C 1.53004 * 109.47230 * 179.97438 * 5 4 2 7 7 C 1.53117 * 109.52282 * 184.99834 * 6 5 4 8 8 C 1.53034 * 109.27588 * 182.37787 * 7 6 5 9 9 N 1.46846 * 109.52689 * 59.17989 * 8 7 6 10 10 C 1.46901 * 111.00467 * 174.16153 * 9 8 7 11 11 C 1.50695 * 109.47025 * 64.90491 * 10 9 8 12 12 H 1.07995 * 120.00145 * 354.72249 * 11 10 9 13 13 C 1.37875 * 119.99857 * 174.99821 * 11 10 9 14 14 N 1.31517 * 119.99985 * 359.72866 * 13 11 10 15 15 Si 1.86802 * 120.00298 * 179.72315 * 13 11 10 16 16 H 1.48502 * 109.46826 * 60.00157 * 15 13 11 17 17 H 1.48491 * 109.47296 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47209 * 300.00478 * 15 13 11 19 19 C 1.46846 * 111.19666 * 298.26037 * 9 8 7 20 20 C 1.53043 * 109.52705 * 61.73864 * 19 9 8 21 21 H 1.09002 * 109.47119 * 296.05147 * 1 2 3 22 22 H 1.09006 * 109.47097 * 56.04476 * 1 2 3 23 23 H 1.08996 * 109.47611 * 176.04872 * 1 2 3 24 24 H 1.09003 * 109.47551 * 183.95209 * 3 2 1 25 25 H 1.08999 * 109.47146 * 303.95121 * 3 2 1 26 26 H 1.09004 * 109.47786 * 63.94940 * 3 2 1 27 27 H 1.08995 * 109.47421 * 306.04572 * 4 2 1 28 28 H 1.09000 * 109.46720 * 186.04223 * 4 2 1 29 29 H 1.09003 * 109.47309 * 59.99989 * 5 4 2 30 30 H 1.08996 * 109.47314 * 300.00072 * 5 4 2 31 31 H 1.08997 * 109.52090 * 305.12589 * 6 5 4 32 32 H 1.09002 * 109.50148 * 62.43843 * 7 6 5 33 33 H 1.08994 * 109.53641 * 302.33735 * 7 6 5 34 34 H 1.09006 * 109.46434 * 299.16588 * 8 7 6 35 35 H 1.09003 * 109.45468 * 179.19093 * 8 7 6 36 36 H 1.09006 * 109.46836 * 304.90409 * 10 9 8 37 37 H 1.09000 * 109.47144 * 184.90806 * 10 9 8 38 38 H 0.97005 * 120.00330 * 180.02562 * 14 13 11 39 39 H 1.08998 * 109.46431 * 181.75597 * 19 9 8 40 40 H 1.09001 * 109.46282 * 301.72122 * 19 9 8 41 41 H 1.08994 * 109.50185 * 180.87989 * 20 19 9 42 42 H 1.08996 * 109.49882 * 60.75716 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9953 -0.7660 1.1377 5 6 1.6313 -2.2426 0.9705 6 6 2.1800 -3.0405 2.1551 7 6 1.9257 -4.5333 1.9283 8 6 2.4231 -5.3207 3.1426 9 7 1.7180 -4.8631 4.3467 10 6 2.0689 -5.6904 5.5088 11 6 3.5303 -5.5113 5.8300 12 1 4.1568 -4.9170 5.1814 13 6 4.0687 -6.1108 6.9487 14 7 3.3058 -6.8346 7.7385 15 14 5.8819 -5.8952 7.3428 16 1 6.1795 -4.4524 7.5306 17 1 6.2092 -6.6348 8.5881 18 1 6.6986 -6.4272 6.2225 19 6 1.9853 -3.4436 4.6113 20 6 1.4748 -2.6001 3.4409 21 1 -0.3633 0.4513 0.9233 22 1 -0.3634 0.5740 -0.8525 23 1 -0.3634 -1.0251 -0.0708 24 1 3.0828 1.3432 -0.0708 25 1 1.5899 1.9162 -0.8524 26 1 1.7044 1.8724 0.9232 27 1 1.5610 -0.3872 2.0629 28 1 3.0796 -0.6611 1.1757 29 1 2.0657 -2.6214 0.0453 30 1 0.5471 -2.3474 0.9324 31 1 3.2515 -2.8636 2.2483 32 1 2.4604 -4.8623 1.0373 33 1 0.8575 -4.7050 1.7959 34 1 3.4941 -5.1599 3.2659 35 1 2.2303 -6.3827 2.9905 36 1 1.8726 -6.7382 5.2813 37 1 1.4685 -5.3861 6.3661 38 1 3.6845 -7.2561 8.5258 39 1 1.4748 -3.1422 5.5260 40 1 3.0584 -3.2917 4.7277 41 1 1.6874 -1.5480 3.6306 42 1 0.3994 -2.7409 3.3326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056522736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:20 Heat of formation + Delta-G solvation = -32.464659 kcal Electronic energy + Delta-G solvation = -17857.235493 eV Core-core repulsion = 15256.439557 eV Total energy + Delta-G solvation = -2600.795937 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.18084 -38.43244 -35.96404 -34.28555 -31.68642 -30.98016 -28.46529 -28.30362 -26.17060 -24.22007 -23.93174 -22.47945 -21.35088 -20.56570 -18.48581 -17.02948 -16.47438 -16.41227 -15.83880 -15.76566 -15.68052 -15.15777 -15.02760 -14.37979 -14.28040 -13.87251 -13.35727 -13.26249 -13.12426 -12.93270 -12.84293 -12.69142 -12.53003 -12.48811 -12.10939 -12.07219 -11.97807 -11.82911 -11.67334 -11.35808 -10.98581 -10.90780 -10.62154 -9.26623 -9.00242 -8.16150 -6.37289 1.35018 1.36692 1.45024 2.35559 3.04949 3.07262 3.41448 3.89480 3.91506 4.02448 4.27634 4.31434 4.41171 4.46127 4.54078 4.62153 4.65546 4.69859 4.75114 4.79466 4.81862 4.94660 4.98739 5.02217 5.05493 5.08766 5.15271 5.18883 5.28586 5.29632 5.31182 5.35555 5.45387 5.61595 5.72864 6.05606 6.11604 6.14620 6.27897 6.60143 6.84596 7.34428 8.85425 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038019 B = 0.004667 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.301004 B = 5998.153894 C = 6302.991794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.562 5.562 3 C 0.023 3.977 4 C 0.055 3.945 5 C -0.094 4.094 6 C -0.080 4.080 7 C -0.099 4.099 8 C 0.062 3.938 9 N -0.541 5.541 10 C 0.198 3.802 11 C -0.558 4.558 12 H 0.055 0.945 13 C 0.011 3.989 14 N -0.927 5.927 15 Si 0.958 3.042 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.269 1.269 19 C 0.065 3.935 20 C -0.098 4.098 21 H 0.024 0.976 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.024 0.976 27 H 0.034 0.966 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.015 0.985 35 H 0.053 0.947 36 H 0.001 0.999 37 H 0.005 0.995 38 H 0.266 0.734 39 H 0.049 0.951 40 H 0.016 0.984 41 H 0.073 0.927 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 13.683 -15.211 20.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.286 5.286 3 C -0.125 4.125 4 C -0.073 4.073 5 C -0.132 4.132 6 C -0.100 4.100 7 C -0.136 4.136 8 C -0.066 4.066 9 N -0.265 5.265 10 C 0.071 3.929 11 C -0.597 4.597 12 H 0.073 0.927 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.783 3.217 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.194 1.194 19 C -0.064 4.064 20 C -0.136 4.136 21 H 0.042 0.958 22 H 0.095 0.905 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.019 0.981 37 H 0.023 0.977 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.034 0.966 41 H 0.092 0.908 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.679 13.307 -15.574 20.813 hybrid contribution 1.505 0.096 1.811 2.357 sum -2.174 13.403 -13.764 19.334 Atomic orbital electron populations 1.22472 0.86861 1.02761 1.00696 1.62023 1.08764 1.14440 1.43351 1.22421 1.00970 0.88306 1.00836 1.22185 0.99976 0.93966 0.91176 1.21468 1.01139 0.93263 0.97319 1.21105 0.99401 0.94775 0.94679 1.21580 1.01770 0.94251 0.96034 1.21923 0.95295 0.98613 0.90798 1.62386 1.56705 1.03097 1.04322 1.19409 0.93465 0.91791 0.88203 1.21950 0.96649 1.31622 1.09455 0.92671 1.25845 1.02517 0.94565 0.95924 1.70063 1.37679 1.33657 1.15287 0.85613 0.79864 0.78525 0.77745 1.19460 1.20510 1.19449 1.21877 0.97790 0.88637 0.98047 1.21631 1.00377 0.98180 0.93422 0.95788 0.90517 0.90972 0.91217 0.90370 0.95742 0.94760 0.91128 0.91045 0.91488 0.92342 0.90352 0.91226 0.96718 0.92825 0.98075 0.97732 0.92545 0.93277 0.96577 0.90843 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.32 127.69 1.19 1.52 16 2 N -0.56 -10.65 5.02 -948.85 -4.76 -15.41 16 3 C 0.02 0.35 9.57 127.69 1.22 1.58 16 4 C 0.05 1.11 4.72 86.30 0.41 1.52 16 5 C -0.09 -2.00 4.61 30.59 0.14 -1.86 16 6 C -0.08 -2.14 2.25 -10.71 -0.02 -2.17 16 7 C -0.10 -2.88 5.38 30.64 0.16 -2.71 16 8 C 0.06 2.45 5.12 86.32 0.44 2.90 16 9 N -0.54 -24.14 4.86 -900.92 -4.38 -28.52 16 10 C 0.20 10.85 5.12 85.56 0.44 11.29 16 11 C -0.56 -31.77 7.72 25.60 0.20 -31.57 16 12 H 0.06 3.09 5.86 -2.91 -0.02 3.08 16 13 C 0.01 0.62 5.46 84.65 0.46 1.08 16 14 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 15 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 C 0.06 2.60 5.03 86.33 0.43 3.04 16 20 C -0.10 -2.91 5.08 30.65 0.16 -2.75 16 21 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 22 H 0.08 1.05 8.12 -2.38 -0.02 1.03 16 23 H 0.07 1.18 6.47 -2.39 -0.02 1.16 16 24 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 25 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 26 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.03 0.72 6.62 -2.39 -0.02 0.71 16 28 H 0.07 1.45 8.06 -2.39 -0.02 1.43 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 1.38 6.55 -2.39 -0.02 1.36 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.01 0.63 6.86 -2.38 -0.02 0.61 16 35 H 0.05 2.17 8.08 -2.39 -0.02 2.15 16 36 H 0.00 0.07 8.08 -2.38 -0.02 0.05 16 37 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 39 H 0.05 2.05 8.12 -2.39 -0.02 2.03 16 40 H 0.02 0.70 6.73 -2.39 -0.02 0.69 16 41 H 0.07 1.91 6.71 -2.39 -0.02 1.89 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -63.12 319.35 -0.65 -63.77 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 0.95 Total: 7.76 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 5.23 Total: -18.14 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -8.85 Total: -99.91 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -63.12 -0.65 -63.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056522736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.306 kcal (2) G-P(sol) polarization free energy of solvation -63.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds