Wall clock time and date at job start Thu Apr 9 2020 12:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46907 * 109.46956 * 2 1 4 4 C 1.46900 * 110.99651 * 83.23028 * 3 2 1 5 5 C 1.53007 * 109.47282 * 286.81770 * 4 3 2 6 6 C 1.46894 * 111.00014 * 207.18408 * 3 2 1 7 7 H 1.09001 * 110.90526 * 44.91674 * 6 3 2 8 8 C 1.55435 * 111.10456 * 280.95656 * 6 3 2 9 9 C 1.54324 * 103.04428 * 206.29687 * 8 6 3 10 10 N 1.47445 * 107.23238 * 22.28308 * 9 8 6 11 11 C 1.46904 * 110.99683 * 123.26088 * 10 9 8 12 12 C 1.52997 * 109.47378 * 55.96945 * 11 10 9 13 13 C 1.50703 * 109.47057 * 181.03258 * 12 11 10 14 14 H 1.08004 * 120.00063 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99864 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99815 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00179 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47175 * 89.99733 * 17 15 13 19 19 H 1.48492 * 109.47094 * 209.99873 * 17 15 13 20 20 H 1.48503 * 109.47069 * 330.00130 * 17 15 13 21 21 C 1.47841 * 108.56915 * 0.99221 * 10 9 8 22 22 H 1.08999 * 109.47078 * 59.33198 * 1 2 3 23 23 H 1.09001 * 109.46626 * 179.32767 * 1 2 3 24 24 H 1.08997 * 109.47000 * 299.32677 * 1 2 3 25 25 H 1.08996 * 109.47353 * 240.00239 * 2 1 3 26 26 H 1.09003 * 109.47073 * 119.99873 * 2 1 3 27 27 H 1.09000 * 109.47703 * 46.82233 * 4 3 2 28 28 H 1.09009 * 109.46715 * 166.82428 * 4 3 2 29 29 H 1.08992 * 109.47123 * 197.90175 * 5 4 3 30 30 H 1.08999 * 109.47247 * 317.90389 * 5 4 3 31 31 H 1.09003 * 109.46189 * 77.90266 * 5 4 3 32 32 H 1.08996 * 110.69329 * 87.90868 * 8 6 3 33 33 H 1.09001 * 110.69428 * 324.68890 * 8 6 3 34 34 H 1.09001 * 109.88669 * 262.87693 * 9 8 6 35 35 H 1.08997 * 110.02430 * 141.76545 * 9 8 6 36 36 H 1.08997 * 109.47089 * 175.97442 * 11 10 9 37 37 H 1.09005 * 109.46823 * 295.96986 * 11 10 9 38 38 H 1.08997 * 109.47543 * 301.03702 * 12 11 10 39 39 H 1.09006 * 109.46995 * 61.03809 * 12 11 10 40 40 H 0.97001 * 120.00081 * 180.02562 * 16 15 13 41 41 H 1.08992 * 110.37731 * 94.72791 * 21 10 9 42 42 H 1.09002 * 110.37455 * 216.96317 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 2.0427 1.9352 1.3619 5 6 0.6114 2.2218 1.8205 6 6 3.3453 1.4748 -0.6265 7 1 3.3789 0.8967 -1.5500 8 6 4.4606 1.0203 0.3561 9 6 5.7025 1.7846 -0.1491 10 7 5.2180 2.9491 -0.9127 11 6 5.7579 4.2002 -0.3638 12 6 7.2861 4.1290 -0.3396 13 6 7.8390 5.4023 0.2470 14 1 7.1676 6.1839 0.5707 15 6 9.2021 5.5693 0.3706 16 7 9.6846 6.6803 0.8830 17 14 10.3633 4.2178 -0.1899 18 1 10.7171 4.4291 -1.6166 19 1 11.5969 4.2511 0.6361 20 1 9.6991 2.8987 -0.0348 21 6 3.7399 2.9510 -0.8811 22 1 -0.3633 0.5242 -0.8839 23 1 -0.3632 -1.0276 -0.0121 24 1 -0.3633 0.5033 0.8959 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.5032 1.2142 2.0374 28 1 2.6190 2.8605 1.3703 29 1 0.6318 2.9056 2.6690 30 1 0.0514 2.6746 1.0023 31 1 0.1314 1.2891 2.1169 32 1 4.6173 -0.0563 0.2896 33 1 4.2170 1.3131 1.3774 34 1 6.2977 1.1391 -0.7951 35 1 6.3040 2.1195 0.6959 36 1 5.4429 5.0366 -0.9878 37 1 5.3847 4.3428 0.6504 38 1 7.6008 3.2817 0.2694 39 1 7.6601 4.0048 -1.3559 40 1 10.6435 6.7980 0.9695 41 1 3.3784 3.5853 -0.0719 42 1 3.3403 3.2912 -1.8365 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062979862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:24 Heat of formation + Delta-G solvation = 11.171600 kcal Electronic energy + Delta-G solvation = -17991.769981 eV Core-core repulsion = 15392.866255 eV Total energy + Delta-G solvation = -2598.903727 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.72390 -37.01878 -33.48975 -31.93213 -31.28543 -29.90187 -29.15488 -26.93537 -24.15539 -23.23887 -22.24961 -21.24471 -19.88709 -19.13184 -16.97050 -16.33743 -15.93431 -15.32284 -14.98357 -14.34391 -13.96161 -13.44726 -13.32661 -13.18916 -12.89979 -12.68174 -12.65601 -12.46847 -12.31615 -11.62676 -11.54454 -11.36556 -11.28762 -11.10531 -10.91230 -10.83618 -10.52316 -10.36413 -10.07531 -9.76294 -9.68324 -9.19137 -8.53121 -8.38203 -7.79539 -6.03973 -4.02021 3.32826 3.39536 3.44035 3.67209 4.46446 4.49569 4.72612 4.81192 4.84158 4.99500 5.13760 5.14470 5.25906 5.30493 5.36856 5.41013 5.48130 5.54878 5.61289 5.63785 5.81730 5.85487 5.87596 5.96005 6.05666 6.14255 6.15472 6.19951 6.21737 6.32344 6.41305 6.76707 6.98448 7.03439 7.16059 7.34716 7.54014 7.64180 7.86124 8.53706 9.00186 9.58529 11.09430 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.045361 B = 0.004735 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.117846 B = 5912.436207 C = 6182.711643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.052 3.948 3 N -0.527 5.527 4 C 0.045 3.955 5 C -0.151 4.151 6 C 0.076 3.924 7 H 0.094 0.906 8 C -0.177 4.177 9 C 0.043 3.957 10 N -0.533 5.533 11 C 0.067 3.933 12 C -0.011 4.011 13 C -0.521 4.521 14 H 0.071 0.929 15 C 0.067 3.933 16 N -0.904 5.904 17 Si 0.881 3.119 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.266 1.266 21 C 0.051 3.949 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.025 0.975 38 H 0.017 0.983 39 H 0.020 0.980 40 H 0.263 0.737 41 H 0.048 0.952 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.872 -14.090 -0.423 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.076 4.076 3 N -0.251 5.251 4 C -0.083 4.083 5 C -0.208 4.208 6 C -0.033 4.033 7 H 0.112 0.888 8 C -0.217 4.217 9 C -0.086 4.086 10 N -0.257 5.257 11 C -0.060 4.060 12 C -0.049 4.049 13 C -0.559 4.559 14 H 0.089 0.911 15 C -0.134 4.134 16 N -0.543 5.543 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.077 4.077 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.035 0.965 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.867 -13.734 -1.170 21.783 hybrid contribution 1.127 -0.996 1.081 1.852 sum -15.739 -14.730 -0.089 21.557 Atomic orbital electron populations 1.22117 0.95110 1.01093 1.03334 1.22095 0.96197 0.88645 1.00638 1.62111 1.24361 1.19379 1.19203 1.22234 0.97662 0.99926 0.88493 1.22038 0.96463 1.01195 1.01135 1.23031 0.85947 0.97410 0.96949 0.88799 1.23562 0.97395 1.00580 1.00185 1.22763 0.96051 0.92473 0.97286 1.63698 1.05612 1.03683 1.52750 1.22274 0.97781 0.89593 0.96361 1.19656 0.90679 0.97528 0.97002 1.21085 0.92469 1.01431 1.40963 0.91116 1.24998 0.98264 0.95462 0.94652 1.69915 1.13094 1.25710 1.45571 0.86750 0.80303 0.83160 0.78913 1.20180 1.21486 1.19048 1.23015 0.88505 0.94793 1.01375 0.92086 0.93006 0.91319 0.91388 0.94642 0.94503 0.90487 0.92592 0.91447 0.92439 0.91452 0.91084 0.91126 0.91613 0.91376 0.95662 0.96503 0.96167 0.92733 0.93354 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.78 37.16 0.36 -0.94 16 2 C 0.05 0.50 5.58 -3.82 -0.02 0.48 16 3 N -0.53 -5.90 4.42 -223.89 -0.99 -6.89 16 4 C 0.04 0.49 4.18 -3.82 -0.02 0.47 16 5 C -0.15 -1.39 8.52 37.16 0.32 -1.07 16 6 C 0.08 0.95 3.05 -65.41 -0.20 0.76 16 7 H 0.09 1.16 7.72 -51.93 -0.40 0.76 16 8 C -0.18 -2.31 6.08 -24.74 -0.15 -2.46 16 9 C 0.04 0.70 6.13 -2.83 -0.02 0.68 16 10 N -0.53 -9.48 5.27 -231.25 -1.22 -10.70 16 11 C 0.07 1.40 4.72 -3.82 -0.02 1.38 16 12 C -0.01 -0.27 3.85 -27.88 -0.11 -0.38 16 13 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 14 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 17 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 20 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 21 C 0.05 0.76 6.23 -2.30 -0.01 0.75 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.55 4.39 -51.93 -0.23 0.32 16 25 H 0.07 0.63 7.56 -51.93 -0.39 0.24 16 26 H 0.04 0.34 7.62 -51.93 -0.40 -0.06 16 27 H 0.04 0.40 6.57 -51.93 -0.34 0.06 16 28 H 0.08 0.96 5.99 -51.92 -0.31 0.65 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.06 0.47 5.93 -51.93 -0.31 0.16 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.94 5.71 -51.93 -0.30 0.64 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.19 6.06 -51.93 -0.31 0.88 16 36 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.03 0.53 8.01 -51.93 -0.42 0.11 16 38 H 0.02 0.41 5.29 -51.93 -0.27 0.14 16 39 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.05 0.74 5.76 -51.93 -0.30 0.44 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 310.74 15.07 4.68 4.68 Total: -1.00 -30.20 310.74 -9.05 -39.26 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -7.34 Total: -2.53 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -0.29 Total: -13.87 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -1.43 Total: -44.98 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.20 -9.05 -39.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062979862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.428 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds