Wall clock time and date at job start Thu Apr 9 2020 12:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47005 * 2 1 4 4 N 1.29025 * 124.91334 * 90.00038 * 3 2 1 5 5 C 1.31786 * 117.12387 * 180.02562 * 4 3 2 6 6 C 1.50703 * 122.74886 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.46849 * 305.02061 * 6 5 4 8 8 O 1.21207 * 120.00557 * 359.97438 * 7 6 5 9 9 O 1.34313 * 119.99849 * 180.02562 * 7 6 5 10 10 C 1.34924 * 117.00023 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99969 * 359.97438 * 10 9 7 12 12 C 1.38754 * 119.99738 * 179.97438 * 10 9 7 13 13 N 1.31444 * 119.99860 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00224 * 0.02562 * 12 10 9 15 15 H 1.48491 * 109.47151 * 89.99860 * 14 12 10 16 16 H 1.48504 * 109.46702 * 209.99723 * 14 12 10 17 17 H 1.48497 * 109.46695 * 329.99429 * 14 12 10 18 18 C 1.33638 * 114.49881 * 0.22458 * 5 4 3 19 19 S 1.70969 * 124.91850 * 270.00296 * 3 2 1 20 20 H 1.08994 * 109.47108 * 299.99477 * 1 2 3 21 21 H 1.08991 * 109.47478 * 60.00110 * 1 2 3 22 22 H 1.09008 * 109.46594 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47417 * 240.00664 * 2 1 3 24 24 H 1.09000 * 109.47499 * 120.00113 * 2 1 3 25 25 H 1.09001 * 109.46723 * 185.01831 * 6 5 4 26 26 H 1.08995 * 109.47249 * 65.02224 * 6 5 4 27 27 H 0.96996 * 120.00358 * 180.02562 * 13 12 10 28 28 H 1.08003 * 126.03742 * 179.76561 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2784 2.1171 1.0580 5 6 2.7131 3.3483 0.8794 6 6 3.0390 4.2720 2.0247 7 6 1.8441 4.3829 2.9361 8 8 0.8283 3.7728 2.6809 9 8 1.9043 5.1587 4.0309 10 6 0.7997 5.2142 4.8038 11 1 -0.0797 4.6501 4.5302 12 6 0.7936 5.9961 5.9500 13 7 -0.2822 6.0498 6.7032 14 14 2.3144 6.9724 6.4228 15 1 2.2500 8.3201 5.8027 16 1 2.3750 7.1097 7.9002 17 1 3.5272 6.2634 5.9414 18 6 2.8363 3.7123 -0.4005 19 16 2.3584 2.3435 -1.4019 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0278 -0.0005 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.2919 5.2581 1.6354 26 1 3.8861 3.8736 2.5830 27 1 -0.2867 6.5967 7.5043 28 1 3.1713 4.6748 -0.7580 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064116336.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:36 Heat of formation + Delta-G solvation = -41.133886 kcal Electronic energy + Delta-G solvation = -14636.072178 eV Core-core repulsion = 11972.435240 eV Total energy + Delta-G solvation = -2663.636937 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.056 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.99799 -38.76991 -35.32729 -34.14818 -32.24234 -31.05082 -28.21135 -25.53362 -24.99552 -22.05864 -20.16190 -19.46114 -17.92442 -17.43166 -16.58725 -15.42112 -15.08667 -14.73969 -14.43029 -14.29809 -13.77973 -13.44899 -12.91511 -12.43116 -12.40161 -12.15126 -11.82566 -11.64622 -11.34395 -11.12181 -11.05150 -10.41182 -10.29866 -9.64108 -9.40372 -9.26841 -9.06044 -8.61779 -8.57586 -6.30115 -4.05507 0.83549 1.47298 1.81321 2.93972 3.19790 3.28130 3.40394 3.49628 4.13077 4.27747 4.34434 4.85909 5.07892 5.14667 5.20824 5.21392 5.42538 5.53057 5.70014 5.77056 5.88317 5.97732 6.16211 6.27162 6.53029 7.81381 7.98870 8.11187 8.72020 9.08797 9.76912 10.78856 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.040434 B = 0.005739 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.323453 B = 4877.729291 C = 5355.077645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.044 4.044 3 C 0.056 3.944 4 N -0.439 5.439 5 C 0.097 3.903 6 C -0.035 4.035 7 C 0.415 3.585 8 O -0.521 6.521 9 O -0.257 6.257 10 C -0.378 4.378 11 H 0.108 0.892 12 C 0.064 3.936 13 N -0.879 5.879 14 Si 0.905 3.095 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.260 1.260 18 C -0.258 4.258 19 S 0.091 5.909 20 H 0.068 0.932 21 H 0.055 0.945 22 H 0.065 0.935 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.278 0.722 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.107 -7.375 -15.523 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.085 4.085 3 C -0.223 4.223 4 N -0.152 5.152 5 C -0.034 4.034 6 C -0.075 4.075 7 C 0.259 3.741 8 O -0.414 6.414 9 O -0.166 6.166 10 C -0.454 4.454 11 H 0.125 0.875 12 C -0.139 4.139 13 N -0.519 5.519 14 Si 0.731 3.269 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.184 1.184 18 C -0.397 4.397 19 S 0.345 5.655 20 H 0.087 0.913 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.100 0.900 24 H 0.112 0.888 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.088 0.912 28 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 7.599 -7.873 -15.961 19.351 hybrid contribution 0.655 1.196 1.052 1.722 sum 8.254 -6.677 -14.909 18.302 Atomic orbital electron populations 1.21773 0.93419 1.02274 1.03206 1.20196 0.96911 0.87577 1.03847 1.27072 1.03185 1.01689 0.90361 1.65996 1.12444 1.05771 1.31008 1.19677 0.99390 0.91185 0.93189 1.19679 0.97059 0.98696 0.92110 1.22549 0.89057 0.80194 0.82323 1.90625 1.32739 1.44797 1.73196 1.83507 1.41520 1.58751 1.32819 1.20622 0.90995 1.29844 1.03928 0.87468 1.24533 0.97980 0.96788 0.94607 1.69611 1.27805 1.39467 1.14993 0.86216 0.83001 0.80241 0.77453 1.19968 1.20853 1.18403 1.26694 1.13292 1.04172 0.95495 1.83684 1.61781 1.06288 1.13706 0.91273 0.92566 0.91606 0.89988 0.88807 0.87246 0.87145 0.91165 0.80526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.89 37.16 0.37 -1.31 15 2 C -0.04 -0.50 6.52 -27.88 -0.18 -0.68 15 3 C 0.06 0.83 6.64 -13.46 -0.09 0.74 15 4 N -0.44 -8.13 9.68 -8.06 -0.08 -8.21 15 5 C 0.10 1.68 5.64 -84.22 -0.47 1.21 15 6 C -0.03 -0.61 6.31 -29.04 -0.18 -0.79 15 7 C 0.41 10.15 7.87 36.00 0.28 10.43 15 8 O -0.52 -14.53 14.68 -19.05 -0.28 -14.81 15 9 O -0.26 -6.95 8.58 -20.72 -0.18 -7.13 15 10 C -0.38 -11.59 10.10 30.92 0.31 -11.27 15 11 H 0.11 3.64 7.09 -52.49 -0.37 3.27 15 12 C 0.06 1.87 5.49 -17.53 -0.10 1.78 15 13 N -0.88 -26.69 13.96 55.48 0.77 -25.91 15 14 Si 0.91 21.79 28.62 -169.99 -4.86 16.93 15 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 16 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 17 H -0.26 -6.10 7.11 56.52 0.40 -5.70 15 18 C -0.26 -3.57 11.07 29.12 0.32 -3.24 15 19 S 0.09 1.11 23.18 -107.50 -2.49 -1.38 15 20 H 0.07 1.00 8.14 -51.93 -0.42 0.57 15 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.06 0.58 8.14 -51.92 -0.42 0.16 15 23 H 0.08 0.68 8.14 -51.93 -0.42 0.26 15 24 H 0.09 1.07 8.14 -51.93 -0.42 0.64 15 25 H 0.11 1.53 8.03 -51.93 -0.42 1.11 15 26 H 0.11 1.71 8.14 -51.93 -0.42 1.29 15 27 H 0.28 7.70 8.31 -40.82 -0.34 7.36 15 28 H 0.18 1.88 8.06 -52.48 -0.42 1.45 15 LS Contribution 269.88 15.07 4.07 4.07 Total: -1.00 -35.48 269.88 -5.67 -41.16 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -2.88 Total: -1.56 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 0.26 Total: -3.15 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.70 Total: -34.12 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.46 Total: -21.94 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.86 Total: 16.93 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.49 Total: -1.38 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -35.48 -5.67 -41.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064116336.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.022 kcal (2) G-P(sol) polarization free energy of solvation -35.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds