Wall clock time and date at job start Thu Apr 9 2020 12:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47072 * 2 1 4 4 N 1.29388 * 124.70301 * 89.99708 * 3 2 1 5 5 C 1.30910 * 117.47342 * 179.97438 * 4 3 2 6 6 C 1.50707 * 123.04315 * 180.02562 * 5 4 3 7 7 C 1.36827 * 113.91671 * 359.97438 * 5 4 3 8 8 C 1.46446 * 126.17981 * 180.02562 * 7 5 4 9 9 O 1.21646 * 120.00415 * 359.71994 * 8 7 5 10 10 O 1.34885 * 120.00074 * 180.02562 * 8 7 5 11 11 C 1.34855 * 117.00364 * 179.97438 * 10 8 7 12 12 H 1.08001 * 120.00080 * 359.97438 * 11 10 8 13 13 C 1.38780 * 120.00076 * 179.97438 * 11 10 8 14 14 N 1.31442 * 120.00184 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 120.00110 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47106 * 89.99930 * 15 13 11 17 17 H 1.48496 * 109.47270 * 209.99730 * 15 13 11 18 18 H 1.48499 * 109.46806 * 329.99881 * 15 13 11 19 19 S 1.70927 * 124.69846 * 270.28769 * 3 2 1 20 20 H 1.08997 * 109.47635 * 300.00246 * 1 2 3 21 21 H 1.08997 * 109.47119 * 60.00474 * 1 2 3 22 22 H 1.09003 * 109.46800 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47457 * 239.99229 * 2 1 3 24 24 H 1.09009 * 109.46776 * 119.99437 * 2 1 3 25 25 H 1.09002 * 109.46550 * 269.97548 * 6 5 4 26 26 H 1.09005 * 109.47132 * 29.97172 * 6 5 4 27 27 H 1.08996 * 109.47287 * 149.97135 * 6 5 4 28 28 H 0.97002 * 119.99613 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2778 2.1153 1.0637 5 6 2.7112 3.3396 0.8990 6 6 3.0364 4.2579 2.0488 7 6 2.8432 3.7096 -0.4117 8 6 3.3046 5.0108 -0.9003 9 8 3.6082 5.8845 -0.1103 10 8 3.3870 5.2425 -2.2266 11 6 3.8187 6.4614 -2.6095 12 1 4.0796 7.2001 -1.8660 13 6 3.9277 6.7666 -3.9589 14 7 3.6108 5.8675 -4.8638 15 14 4.5250 8.4553 -4.4893 16 1 6.0034 8.4362 -4.6287 17 1 3.9095 8.8111 -5.7930 18 1 4.1370 9.4609 -3.4679 19 16 2.3500 2.3405 -1.4053 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.1462 4.8225 2.3258 26 1 3.3722 3.6676 2.9015 27 1 3.8261 4.9476 1.7509 28 1 3.6873 6.0808 -5.8070 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065338558.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:38 Heat of formation + Delta-G solvation = -49.001047 kcal Electronic energy + Delta-G solvation = -14678.450549 eV Core-core repulsion = 12014.472466 eV Total energy + Delta-G solvation = -2663.978083 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.056 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.75989 -38.67698 -35.34415 -34.03477 -32.28793 -30.50493 -28.25036 -25.50125 -25.15625 -21.91313 -21.62348 -18.82341 -18.01204 -17.30579 -16.27028 -15.26994 -15.03623 -14.56592 -14.33780 -14.14980 -13.77486 -13.23343 -12.76365 -12.53545 -12.17799 -11.81424 -11.71625 -11.60369 -11.31015 -11.19968 -10.89975 -10.57256 -10.49252 -9.96171 -9.45390 -9.08647 -9.04131 -8.69769 -8.29837 -6.55299 -4.16932 0.64117 1.63384 2.10975 2.82600 3.11258 3.12805 3.19337 3.83194 3.85206 4.19066 4.53574 4.93321 5.04167 5.12974 5.16459 5.45725 5.58287 5.71540 5.85582 6.03338 6.08173 6.18691 6.21862 6.59704 6.78250 7.26997 7.80739 8.00177 8.56653 8.92165 9.68953 10.61703 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.036960 B = 0.006532 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.393963 B = 4285.542130 C = 4942.373409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C 0.019 3.981 4 N -0.475 5.475 5 C 0.116 3.884 6 C -0.081 4.081 7 C -0.241 4.241 8 C 0.465 3.535 9 O -0.539 6.539 10 O -0.203 6.203 11 C -0.371 4.371 12 H 0.101 0.899 13 C 0.041 3.959 14 N -0.854 5.854 15 Si 0.948 3.052 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.265 1.265 19 S 0.204 5.796 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 -9.447 5.773 11.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C -0.255 4.255 4 N -0.190 5.190 5 C -0.021 4.021 6 C -0.140 4.140 7 C -0.364 4.364 8 C 0.312 3.688 9 O -0.438 6.438 10 O -0.110 6.110 11 C -0.448 4.448 12 H 0.119 0.881 13 C -0.164 4.164 14 N -0.490 5.490 15 Si 0.772 3.228 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.189 1.189 19 S 0.463 5.537 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.084 0.916 23 H 0.103 0.897 24 H 0.109 0.891 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.011 -9.739 5.083 11.696 hybrid contribution 0.466 1.318 0.324 1.435 sum -3.546 -8.421 5.407 10.617 Atomic orbital electron populations 1.21780 0.93697 1.02258 1.02831 1.20174 0.96570 0.87688 1.04017 1.27285 1.03683 1.01971 0.92608 1.65941 1.15568 1.05818 1.31706 1.20790 0.97422 0.90716 0.93214 1.20538 1.03429 0.96865 0.93148 1.25057 1.15612 0.99350 0.96370 1.19058 0.81140 0.85499 0.83104 1.90637 1.51490 1.45080 1.56587 1.83943 1.69895 1.36158 1.20986 1.21372 1.43279 0.87818 0.92283 0.88150 1.25431 0.96537 1.00111 0.94352 1.69996 1.43359 1.34106 1.01518 0.85604 0.78957 0.79907 0.78375 1.19682 1.20158 1.18886 1.84227 1.56830 1.03327 1.09322 0.92024 0.92218 0.91577 0.89681 0.89058 0.90752 0.91444 0.88249 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 37.16 0.37 -1.06 15 2 C -0.04 -0.48 6.51 -27.88 -0.18 -0.66 15 3 C 0.02 0.30 6.63 -13.31 -0.09 0.21 15 4 N -0.48 -8.48 10.49 -7.46 -0.08 -8.56 15 5 C 0.12 2.28 6.84 -83.49 -0.57 1.71 15 6 C -0.08 -1.41 9.72 36.01 0.35 -1.06 15 7 C -0.24 -5.28 6.52 -36.79 -0.24 -5.52 15 8 C 0.46 12.13 7.86 34.04 0.27 12.40 15 9 O -0.54 -14.54 13.58 -19.38 -0.26 -14.80 15 10 O -0.20 -5.88 9.64 -22.06 -0.21 -6.09 15 11 C -0.37 -10.86 9.65 30.93 0.30 -10.56 15 12 H 0.10 2.92 6.86 -52.49 -0.36 2.56 15 13 C 0.04 1.14 5.50 -17.52 -0.10 1.04 15 14 N -0.85 -24.45 13.67 55.49 0.76 -23.70 15 15 Si 0.95 20.81 29.55 -169.99 -5.02 15.79 15 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 17 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 18 H -0.26 -5.71 7.11 56.52 0.40 -5.31 15 19 S 0.20 3.70 23.04 -107.50 -2.48 1.22 15 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.07 0.49 8.14 -51.93 -0.42 0.06 15 23 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.09 0.92 8.14 -51.92 -0.42 0.50 15 25 H 0.07 1.22 8.14 -51.93 -0.42 0.79 15 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 27 H 0.10 1.91 6.06 -51.93 -0.31 1.59 15 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 LS Contribution 268.62 15.07 4.05 4.05 Total: -1.00 -32.18 268.62 -5.91 -38.09 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: -2.77 Total: -2.50 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 0.11 Total: -3.51 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.68 Total: -32.25 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.48 Total: -20.90 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -2.48 Total: 1.22 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.18 -5.91 -38.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065338558.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.908 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds