Wall clock time and date at job start Thu Apr 9 2020 12:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47072 * 2 1 4 4 N 1.29388 * 124.70301 * 89.99708 * 3 2 1 5 5 C 1.30910 * 117.47342 * 179.97438 * 4 3 2 6 6 C 1.50707 * 123.04315 * 180.02562 * 5 4 3 7 7 C 1.36827 * 113.91671 * 359.97438 * 5 4 3 8 8 C 1.46446 * 126.17981 * 180.02562 * 7 5 4 9 9 O 1.21646 * 120.00415 * 359.71994 * 8 7 5 10 10 O 1.34885 * 120.00074 * 180.02562 * 8 7 5 11 11 C 1.34855 * 117.00364 * 179.97438 * 10 8 7 12 12 H 1.08001 * 120.00080 * 359.97438 * 11 10 8 13 13 C 1.38780 * 120.00076 * 179.97438 * 11 10 8 14 14 N 1.31442 * 120.00184 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 120.00110 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47106 * 89.99930 * 15 13 11 17 17 H 1.48496 * 109.47270 * 209.99730 * 15 13 11 18 18 H 1.48499 * 109.46806 * 329.99881 * 15 13 11 19 19 S 1.70927 * 124.69846 * 270.28769 * 3 2 1 20 20 H 1.08997 * 109.47635 * 300.00246 * 1 2 3 21 21 H 1.08997 * 109.47119 * 60.00474 * 1 2 3 22 22 H 1.09003 * 109.46800 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47457 * 239.99229 * 2 1 3 24 24 H 1.09009 * 109.46776 * 119.99437 * 2 1 3 25 25 H 1.09002 * 109.46550 * 269.97548 * 6 5 4 26 26 H 1.09005 * 109.47132 * 29.97172 * 6 5 4 27 27 H 1.08996 * 109.47287 * 149.97135 * 6 5 4 28 28 H 0.97002 * 119.99613 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2778 2.1153 1.0637 5 6 2.7112 3.3396 0.8990 6 6 3.0364 4.2579 2.0488 7 6 2.8432 3.7096 -0.4117 8 6 3.3046 5.0108 -0.9003 9 8 3.6082 5.8845 -0.1103 10 8 3.3870 5.2425 -2.2266 11 6 3.8187 6.4614 -2.6095 12 1 4.0796 7.2001 -1.8660 13 6 3.9277 6.7666 -3.9589 14 7 3.6108 5.8675 -4.8638 15 14 4.5250 8.4553 -4.4893 16 1 6.0034 8.4362 -4.6287 17 1 3.9095 8.8111 -5.7930 18 1 4.1370 9.4609 -3.4679 19 16 2.3500 2.3405 -1.4053 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.1462 4.8225 2.3258 26 1 3.3722 3.6676 2.9015 27 1 3.8261 4.9476 1.7509 28 1 3.6873 6.0808 -5.8070 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065338558.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:37 Heat of formation + Delta-G solvation = -70.087122 kcal Electronic energy + Delta-G solvation = -14679.364910 eV Core-core repulsion = 12014.472466 eV Total energy + Delta-G solvation = -2664.892444 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.43276 -40.53852 -37.36419 -35.18896 -34.38032 -31.85226 -29.90720 -27.41282 -26.41788 -23.66105 -22.84813 -20.53509 -20.05384 -18.94250 -18.00501 -16.97350 -16.89793 -16.26799 -15.91426 -15.58625 -15.03895 -14.66717 -14.27939 -13.98500 -13.72467 -13.47947 -13.23944 -12.92259 -12.56463 -12.47010 -12.42343 -12.17407 -12.08702 -12.03331 -11.19281 -10.78850 -10.76728 -10.57240 -9.79162 -8.61063 -6.38413 -0.87719 0.15320 0.62842 1.22058 1.32682 1.44221 1.50761 1.97088 2.04693 2.60549 2.93931 2.95893 3.78546 3.90615 4.24388 4.30772 4.54188 4.63983 4.66431 4.80870 4.86889 5.00309 5.06712 5.08027 5.29614 5.35731 5.74312 6.47611 6.51554 6.82519 7.61018 8.59293 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.036960 B = 0.006532 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.393963 B = 4285.542130 C = 4942.373409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.048 4.048 3 C 0.062 3.938 4 N -0.489 5.489 5 C 0.142 3.858 6 C -0.082 4.082 7 C -0.307 4.307 8 C 0.470 3.530 9 O -0.558 6.558 10 O -0.232 6.232 11 C -0.420 4.420 12 H 0.088 0.912 13 C -0.002 4.002 14 N -0.896 5.896 15 Si 1.022 2.978 16 H -0.259 1.259 17 H -0.258 1.258 18 H -0.262 1.262 19 S 0.207 5.793 20 H 0.051 0.949 21 H 0.053 0.947 22 H 0.098 0.902 23 H 0.112 0.888 24 H 0.112 0.888 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.495 -11.124 6.381 13.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.212 4.212 4 N -0.205 5.205 5 C 0.002 3.998 6 C -0.140 4.140 7 C -0.429 4.429 8 C 0.318 3.682 9 O -0.458 6.458 10 O -0.141 6.141 11 C -0.495 4.495 12 H 0.105 0.895 13 C -0.203 4.203 14 N -0.532 5.532 15 Si 0.840 3.160 16 H -0.183 1.183 17 H -0.182 1.182 18 H -0.186 1.186 19 S 0.467 5.533 20 H 0.070 0.930 21 H 0.073 0.927 22 H 0.117 0.883 23 H 0.130 0.870 24 H 0.130 0.870 25 H 0.104 0.896 26 H 0.116 0.884 27 H 0.096 0.904 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.611 -11.430 5.688 13.574 hybrid contribution 0.543 1.546 0.353 1.676 sum -4.067 -9.884 6.040 12.277 Atomic orbital electron populations 1.21799 0.92196 1.04249 1.02120 1.20590 0.97582 0.84344 1.06377 1.28368 0.98796 1.03075 0.90975 1.66131 1.17231 1.05144 1.31951 1.21212 0.94352 0.91323 0.92871 1.20591 1.03241 0.96752 0.93464 1.24813 1.20648 0.99346 0.98109 1.19766 0.79325 0.86836 0.82288 1.90590 1.51941 1.46484 1.56760 1.83959 1.71411 1.36318 1.22364 1.21564 1.46485 0.88347 0.93112 0.89464 1.26623 0.95661 1.04528 0.93495 1.70074 1.44496 1.36434 1.02195 0.84576 0.78982 0.74106 0.78380 1.18307 1.18202 1.18634 1.84166 1.56872 1.02248 1.10048 0.92989 0.92746 0.88320 0.86972 0.86988 0.89577 0.88412 0.90440 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.89 71.98 0.71 -1.52 15 2 C -0.05 -0.86 6.51 29.85 0.19 -0.66 15 3 C 0.06 1.79 6.63 88.47 0.59 2.37 15 4 N -0.49 -16.33 10.49 -177.50 -1.86 -18.20 15 5 C 0.14 5.45 6.84 42.37 0.29 5.74 15 6 C -0.08 -2.78 9.72 71.24 0.69 -2.09 15 7 C -0.31 -13.69 6.52 24.08 0.16 -13.54 15 8 C 0.47 25.69 7.86 69.96 0.55 26.24 15 9 O -0.56 -31.62 13.58 19.36 0.26 -31.35 15 10 O -0.23 -14.20 9.64 9.77 0.09 -14.11 15 11 C -0.42 -25.79 9.65 67.95 0.66 -25.13 15 12 H 0.09 5.39 6.86 -2.91 -0.02 5.37 15 13 C 0.00 -0.11 5.50 84.88 0.47 0.36 15 14 N -0.90 -52.66 13.67 21.63 0.30 -52.37 15 15 Si 1.02 43.18 29.55 68.60 2.03 45.20 15 16 H -0.26 -10.32 7.11 99.48 0.71 -9.61 15 17 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 18 H -0.26 -10.85 7.11 99.48 0.71 -10.14 15 19 S 0.21 7.38 23.04 -56.49 -1.30 6.08 15 20 H 0.05 0.92 8.14 -2.39 -0.02 0.90 15 21 H 0.05 0.91 8.14 -2.39 -0.02 0.90 15 22 H 0.10 0.96 8.14 -2.39 -0.02 0.94 15 23 H 0.11 1.50 8.14 -2.39 -0.02 1.48 15 24 H 0.11 1.69 8.14 -2.38 -0.02 1.67 15 25 H 0.09 2.74 8.14 -2.39 -0.02 2.72 15 26 H 0.10 2.70 8.14 -2.38 -0.02 2.68 15 27 H 0.08 3.02 6.06 -2.39 -0.01 3.01 15 28 H 0.28 14.91 8.31 -92.71 -0.77 14.14 15 Total: -1.00 -73.23 268.62 5.00 -68.23 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 1.18 Total: 4.74 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 4.30 Total: -8.23 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -1.57 Total: -70.56 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: 0.36 Total: -45.46 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 7.38 SS G_CDS: -1.30 Total: 6.08 kcal Total: -73.23 5.00 -68.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065338558.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.858 kcal (2) G-P(sol) polarization free energy of solvation -73.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds