Wall clock time and date at job start Thu Apr 9 2020 12:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.50657 * 2 1 4 4 C 1.53049 * 109.49005 * 239.94546 * 2 1 3 5 5 N 1.46958 * 109.36337 * 181.62717 * 4 2 1 6 6 C 1.46958 * 110.87714 * 59.32759 * 5 4 2 7 7 C 1.53049 * 109.36108 * 300.67377 * 6 5 4 8 8 N 1.46955 * 109.48891 * 120.05475 * 2 1 3 9 9 C 1.46898 * 111.00069 * 303.15507 * 8 2 1 10 10 C 1.53005 * 109.47342 * 169.99873 * 9 8 2 11 11 C 1.52997 * 109.47452 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47094 * 90.00289 * 18 16 14 20 20 H 1.48505 * 109.47195 * 210.00171 * 18 16 14 21 21 H 1.48493 * 109.47449 * 330.00136 * 18 16 14 22 22 H 1.08999 * 109.47234 * 299.94307 * 1 2 3 23 23 H 1.09000 * 109.47401 * 59.94571 * 1 2 3 24 24 H 1.09006 * 109.47389 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.49343 * 301.59850 * 4 2 1 26 26 H 1.09005 * 109.48927 * 61.66459 * 4 2 1 27 27 H 1.00905 * 110.99807 * 183.18970 * 5 4 2 28 28 H 1.09000 * 109.49285 * 60.64090 * 6 5 4 29 29 H 1.09003 * 109.48868 * 180.71408 * 6 5 4 30 30 H 1.09008 * 109.49237 * 298.43298 * 7 6 5 31 31 H 1.09005 * 109.48927 * 178.37066 * 7 6 5 32 32 H 1.09002 * 109.47032 * 50.00022 * 9 8 2 33 33 H 1.09001 * 109.47520 * 289.99871 * 9 8 2 34 34 H 1.09002 * 109.46935 * 60.00090 * 10 9 8 35 35 H 1.09001 * 109.46812 * 300.00432 * 10 9 8 36 36 H 1.09002 * 109.47153 * 60.00008 * 11 10 9 37 37 H 1.09001 * 109.46832 * 300.00199 * 11 10 9 38 38 H 1.09002 * 109.47103 * 59.99753 * 12 11 10 39 39 H 1.08998 * 109.46862 * 300.00565 * 12 11 10 40 40 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 41 41 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 42 42 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0406 -0.7226 -1.2488 5 7 3.5096 -0.7551 -1.2264 6 6 3.9999 -1.4490 -0.0274 7 6 3.4893 -0.7265 1.2214 8 7 2.0202 -0.6938 1.1991 9 6 1.4888 -0.0739 2.4202 10 6 1.8115 -0.9609 3.6245 11 6 1.2575 -0.3156 4.8963 12 6 1.5807 -1.2022 6.1005 13 6 1.0272 -0.5566 7.3724 14 6 1.3451 -1.4302 8.5585 15 1 1.8880 -2.3534 8.4192 16 6 0.9438 -1.0504 9.8217 17 7 0.2831 0.0740 9.9915 18 14 1.3384 -2.1330 11.2920 19 1 2.6518 -1.7365 11.8602 20 1 0.2831 -1.9702 12.3240 21 1 1.3940 -3.5528 10.8606 22 1 -0.3634 0.5129 0.8905 23 1 -0.3634 0.5147 -0.8895 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6544 -1.7417 -1.2628 26 1 1.7021 -0.1929 -2.1394 27 1 3.8747 -1.1809 -2.0653 28 1 3.6359 -2.4765 -0.0274 29 1 5.0899 -1.4490 -0.0273 30 1 3.8755 0.2928 1.2354 31 1 3.8277 -1.2561 2.1120 32 1 0.4082 0.0377 2.3304 33 1 1.9451 0.9063 2.5584 34 1 2.8921 -1.0725 3.7143 35 1 1.3552 -1.9411 3.4864 36 1 0.1769 -0.2043 4.8062 37 1 1.7134 0.6648 5.0345 38 1 2.6613 -1.3130 6.1904 39 1 1.1252 -2.1827 5.9624 40 1 -0.0534 -0.4453 7.2828 41 1 1.4832 0.4238 7.5102 42 1 0.0004 0.3410 10.8801 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067799283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:39 Heat of formation + Delta-G solvation = -42.368244 kcal Electronic energy + Delta-G solvation = -17242.754259 eV Core-core repulsion = 14641.528870 eV Total energy + Delta-G solvation = -2601.225389 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.38706 -37.25952 -35.75117 -34.52189 -33.44554 -31.61450 -28.79329 -27.77218 -26.27553 -24.35845 -23.03722 -21.94111 -21.67956 -20.54021 -18.43814 -17.56531 -16.82225 -16.53386 -16.27784 -15.81696 -15.68854 -15.31107 -14.92664 -14.45196 -14.41851 -13.94990 -13.57208 -13.14842 -13.02626 -12.94587 -12.87166 -12.77235 -12.57970 -12.31628 -12.10217 -12.03284 -11.86190 -11.58086 -11.40466 -11.29346 -11.20738 -10.88395 -10.55722 -9.53227 -9.26803 -8.20313 -6.31860 1.39144 1.41016 1.52310 2.40757 2.84197 3.12248 3.25499 3.81610 3.92623 4.04635 4.07523 4.25049 4.33329 4.36197 4.39819 4.44214 4.49194 4.62982 4.73311 4.76470 4.80448 4.87268 4.90349 4.93993 4.98113 5.06261 5.08917 5.19120 5.30218 5.32793 5.37420 5.42994 5.56409 5.78585 5.86874 5.90617 6.06495 6.18703 6.26207 6.47881 6.85653 7.37444 8.91618 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.051241 B = 0.003387 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.309868 B = 8264.820423 C = 8622.923360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.078 3.922 3 H 0.034 0.966 4 C 0.068 3.932 5 N -0.700 5.700 6 C 0.063 3.937 7 C 0.050 3.950 8 N -0.542 5.542 9 C 0.056 3.944 10 C -0.100 4.100 11 C -0.108 4.108 12 C -0.098 4.098 13 C 0.022 3.978 14 C -0.546 4.546 15 H 0.059 0.941 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.263 1.263 22 H 0.056 0.944 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.037 0.963 26 H 0.093 0.907 27 H 0.355 0.645 28 H 0.036 0.964 29 H 0.092 0.908 30 H 0.029 0.971 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.026 0.974 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.049 0.951 40 H -0.010 1.010 41 H -0.011 1.011 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.465 -1.958 -23.938 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 H 0.052 0.948 4 C -0.062 4.062 5 N -0.333 5.333 6 C -0.067 4.067 7 C -0.078 4.078 8 N -0.267 5.267 9 C -0.071 4.071 10 C -0.138 4.138 11 C -0.146 4.146 12 C -0.136 4.136 13 C -0.016 4.016 14 C -0.584 4.584 15 H 0.077 0.923 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.187 1.187 22 H 0.075 0.925 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.055 0.945 26 H 0.111 0.889 27 H 0.174 0.826 28 H 0.055 0.945 29 H 0.110 0.890 30 H 0.047 0.953 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.008 0.992 41 H 0.007 0.993 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.282 -1.716 -23.578 24.025 hybrid contribution 0.105 -0.216 0.995 1.023 sum 4.387 -1.932 -22.583 23.086 Atomic orbital electron populations 1.21878 0.93123 1.02691 1.02589 1.21732 0.96013 0.95400 0.89944 0.94780 1.22019 0.87579 0.99251 0.97336 1.60491 1.08756 1.58445 1.05574 1.21970 1.00186 0.95222 0.89316 1.22252 0.87403 0.99319 0.98852 1.62225 1.08515 1.53885 1.02075 1.22160 1.00761 0.95165 0.89027 1.21461 1.00812 0.99168 0.92369 1.21481 1.00507 0.98612 0.94037 1.21437 0.99655 0.98378 0.94094 1.19045 0.94546 0.94880 0.93085 1.21757 1.35932 1.07317 0.93363 0.92270 1.26031 0.94863 0.96689 1.02484 1.70104 1.39821 1.24113 1.23474 0.85422 0.78048 0.79217 0.78220 1.19683 1.20610 1.18690 0.92522 0.90357 0.92019 0.94519 0.88867 0.82591 0.94526 0.89001 0.95267 0.90019 0.89848 0.95544 0.92110 0.91637 0.92661 0.93085 0.93344 0.93247 0.99180 0.99287 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.89 71.98 0.64 -1.81 16 2 C 0.08 1.52 2.56 44.92 0.12 1.64 16 3 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 4 C 0.07 1.10 6.00 86.31 0.52 1.62 16 5 N -0.70 -11.34 6.90 -513.42 -3.54 -14.89 16 6 C 0.06 1.09 6.72 86.31 0.58 1.67 16 7 C 0.05 1.07 5.41 86.31 0.47 1.54 16 8 N -0.54 -12.33 4.53 -870.48 -3.94 -16.27 16 9 C 0.06 1.40 4.73 86.31 0.41 1.81 16 10 C -0.10 -2.81 5.15 30.60 0.16 -2.65 16 11 C -0.11 -3.75 5.21 30.59 0.16 -3.59 16 12 C -0.10 -4.18 5.15 30.59 0.16 -4.03 16 13 C 0.02 1.18 4.97 29.85 0.15 1.33 16 14 C -0.55 -32.20 9.11 25.60 0.23 -31.97 16 15 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 16 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 17 N -0.93 -58.35 13.29 21.45 0.28 -58.06 16 18 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 22 H 0.06 1.03 6.15 -2.39 -0.01 1.02 16 23 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.35 4.17 8.90 -89.69 -0.80 3.37 16 28 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.08 1.78 6.34 -2.38 -0.02 1.76 16 32 H 0.08 2.01 5.73 -2.39 -0.01 1.99 16 33 H 0.03 0.68 8.12 -2.39 -0.02 0.66 16 34 H 0.06 1.67 6.49 -2.39 -0.02 1.65 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 41 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 42 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -65.99 324.86 -0.97 -66.96 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.16 Total: 9.24 kcal Atomic # 6 Polarization: -38.22 SS G_CDS: 4.05 Total: -34.17 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -7.20 Total: -89.22 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -65.99 -0.97 -66.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067799283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.588 kcal (2) G-P(sol) polarization free energy of solvation -65.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds