Wall clock time and date at job start Thu Apr 9 2020 12:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86801 * 120.00240 * 2 1 4 4 H 1.48506 * 109.46893 * 270.00047 * 3 2 1 5 5 H 1.48497 * 109.47267 * 29.99578 * 3 2 1 6 6 H 1.48503 * 109.47205 * 149.99937 * 3 2 1 7 7 C 1.38954 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99737 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99629 * 179.97438 * 7 2 1 10 10 C 1.34782 * 119.99517 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99858 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99883 * 179.97438 * 10 9 7 13 13 S 1.81399 * 109.47231 * 180.02562 * 12 10 9 14 14 C 1.81396 * 102.99981 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47158 * 179.97438 * 14 13 12 16 16 C 1.34512 * 125.79146 * 89.99809 * 15 14 13 17 17 C 1.41376 * 106.84688 * 179.75198 * 16 15 14 18 18 C 1.34517 * 106.83881 * 0.37683 * 17 16 15 19 19 O 1.34305 * 125.78962 * 269.98031 * 15 14 13 20 20 H 0.97003 * 119.99753 * 359.97438 * 1 2 3 21 21 H 0.96998 * 120.00544 * 0.02562 * 9 7 2 22 22 H 1.09003 * 109.47051 * 60.00249 * 12 10 9 23 23 H 1.08995 * 109.47299 * 300.00274 * 12 10 9 24 24 H 1.09002 * 109.47136 * 60.00421 * 14 13 12 25 25 H 1.08998 * 109.47622 * 299.99587 * 14 13 12 26 26 H 1.08006 * 126.57585 * 359.97438 * 16 15 14 27 27 H 1.07998 * 126.58562 * 180.23597 * 17 16 15 28 28 H 1.08002 * 125.79423 * 179.89440 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4687 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0536 -2.3706 0.0000 11 8 3.4471 -3.4210 0.0000 12 6 5.5606 -2.3707 -0.0012 13 16 6.1652 -4.0809 -0.0016 14 6 7.9676 -3.8765 -0.0022 15 6 8.6269 -5.2317 -0.0020 16 6 8.9707 -5.9394 -1.0930 17 6 9.5611 -7.1392 -0.6339 18 6 9.5352 -7.0966 0.7104 19 8 8.9712 -5.9375 1.0875 20 1 -0.4850 0.8401 0.0004 21 1 3.8648 -0.3634 -0.0004 22 1 5.9246 -1.8565 0.8884 23 1 5.9233 -1.8573 -0.8916 24 1 8.2711 -3.3252 0.8878 25 1 8.2705 -3.3250 -0.8922 26 1 8.8269 -5.6457 -2.1224 27 1 9.9550 -7.9377 -1.2450 28 1 9.9089 -7.8625 1.3739 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071916012.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:49 Heat of formation + Delta-G solvation = -40.016524 kcal Electronic energy + Delta-G solvation = -13985.650737 eV Core-core repulsion = 11322.062252 eV Total energy + Delta-G solvation = -2663.588485 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.056 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.47623 -40.25609 -36.11703 -34.14242 -33.85683 -32.85136 -31.07366 -27.61722 -26.48447 -22.68529 -21.75661 -21.37634 -20.46751 -18.48123 -17.81462 -17.45362 -16.92866 -16.55898 -16.36531 -15.58732 -15.31945 -14.82506 -14.60242 -14.54035 -13.87437 -13.73974 -13.62823 -13.45636 -12.98020 -12.86794 -12.45146 -12.00136 -11.57189 -11.04899 -10.81404 -10.65098 -10.32060 -9.36219 -8.69980 -8.44887 -6.07656 0.07684 1.07579 1.29518 1.34547 1.44659 1.55213 1.82908 1.86716 2.08157 2.21218 2.82547 3.10115 3.65914 4.02827 4.04765 4.13790 4.19152 4.32405 4.34612 4.42772 4.91227 5.01618 5.17726 5.48567 5.59715 5.87952 6.18435 6.50248 6.79743 7.28962 7.83911 8.72336 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.069347 B = 0.004198 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.671963 B = 6668.294862 C = 6878.721775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.967 3.033 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.229 1.229 7 C -0.334 4.334 8 H 0.055 0.945 9 N -0.579 5.579 10 C 0.459 3.541 11 O -0.612 6.612 12 C -0.099 4.099 13 S -0.241 6.241 14 C -0.012 4.012 15 C -0.024 4.024 16 C -0.194 4.194 17 C -0.228 4.228 18 C -0.034 4.034 19 O -0.193 6.193 20 H 0.281 0.719 21 H 0.393 0.607 22 H 0.133 0.867 23 H 0.138 0.862 24 H 0.113 0.887 25 H 0.136 0.864 26 H 0.162 0.838 27 H 0.172 0.828 28 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.163 -3.768 -0.551 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.213 4.213 3 Si 0.786 3.214 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.152 1.152 7 C -0.463 4.463 8 H 0.073 0.927 9 N -0.220 5.220 10 C 0.246 3.754 11 O -0.497 6.497 12 C -0.250 4.250 13 S -0.013 6.013 14 C -0.159 4.159 15 C -0.075 4.075 16 C -0.216 4.216 17 C -0.247 4.247 18 C -0.102 4.102 19 O -0.090 6.090 20 H 0.091 0.909 21 H 0.229 0.771 22 H 0.151 0.849 23 H 0.156 0.844 24 H 0.131 0.869 25 H 0.154 0.846 26 H 0.179 0.821 27 H 0.190 0.810 28 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 22.871 -5.131 -0.245 23.441 hybrid contribution 0.241 1.711 -0.157 1.735 sum 23.112 -3.420 -0.402 23.367 Atomic orbital electron populations 1.69801 1.08224 1.29486 1.49468 1.26174 0.96524 1.02885 0.95680 0.85342 0.79553 0.76364 0.80122 1.17889 1.19893 1.15183 1.19005 0.81195 0.95098 1.50973 0.92713 1.41876 1.05881 1.07211 1.67030 1.20030 0.89416 0.83752 0.82174 1.90595 1.70963 1.32707 1.55432 1.23340 0.94121 0.98161 1.09347 1.88250 1.03740 1.10990 1.98294 1.21813 0.92379 0.92951 1.08783 1.21588 1.04870 0.96108 0.84911 1.21972 1.03853 0.95797 0.99977 1.22213 1.06745 1.00404 0.95352 1.24893 1.00364 0.87886 0.97095 1.84015 1.61360 1.28198 1.35385 0.90939 0.77053 0.84854 0.84390 0.86855 0.84557 0.82066 0.81021 0.74469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.96 21.66 0.30 -55.49 15 2 C -0.01 -0.74 5.50 84.93 0.47 -0.27 15 3 Si 0.97 37.84 27.74 68.60 1.90 39.74 15 4 H -0.25 -9.38 7.11 99.48 0.71 -8.68 15 5 H -0.27 -10.67 7.11 99.48 0.71 -9.96 15 6 H -0.23 -7.40 6.52 99.48 0.65 -6.75 15 7 C -0.33 -19.57 10.16 84.04 0.85 -18.72 15 8 H 0.05 3.85 7.39 -2.92 -0.02 3.83 15 9 N -0.58 -27.16 5.09 -306.99 -1.56 -28.72 15 10 C 0.46 21.11 7.80 87.66 0.68 21.79 15 11 O -0.61 -35.28 15.44 -3.05 -0.05 -35.33 15 12 C -0.10 -2.99 6.42 71.23 0.46 -2.54 15 13 S -0.24 -7.88 20.86 -56.49 -1.18 -9.06 15 14 C -0.01 -0.26 6.47 71.24 0.46 0.20 15 15 C -0.02 -0.57 6.58 24.83 0.16 -0.40 15 16 C -0.19 -4.11 10.81 22.19 0.24 -3.87 15 17 C -0.23 -4.09 10.91 22.19 0.24 -3.85 15 18 C -0.03 -0.60 12.09 66.97 0.81 0.21 15 19 O -0.19 -4.65 10.65 -2.58 -0.03 -4.68 15 20 H 0.28 15.33 8.31 -92.71 -0.77 14.56 15 21 H 0.39 14.84 5.76 -92.71 -0.53 14.31 15 22 H 0.13 3.13 8.14 -2.39 -0.02 3.11 15 23 H 0.14 3.11 8.14 -2.39 -0.02 3.09 15 24 H 0.11 1.98 8.14 -2.39 -0.02 1.96 15 25 H 0.14 2.05 8.14 -2.39 -0.02 2.03 15 26 H 0.16 2.90 8.06 -2.91 -0.02 2.88 15 27 H 0.17 2.12 8.06 -2.91 -0.02 2.10 15 28 H 0.24 2.01 8.06 -2.91 -0.02 1.98 15 Total: -1.00 -80.87 269.41 4.36 -76.51 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.59 Total: 24.47 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 4.38 Total: -7.45 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -1.26 Total: -84.21 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -0.07 Total: -40.00 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 1.90 Total: 39.74 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.18 Total: -9.06 kcal Total: -80.87 4.36 -76.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071916012.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.497 kcal (2) G-P(sol) polarization free energy of solvation -80.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds