Wall clock time and date at job start Thu Apr 9 2020 12:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00073 * 2 1 4 4 C 1.50705 * 109.46967 * 293.95659 * 3 2 1 5 5 H 1.07995 * 120.00072 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99438 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00788 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99679 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47225 * 180.02562 * 8 6 4 10 10 H 1.48496 * 109.47446 * 300.00639 * 8 6 4 11 11 H 1.48507 * 109.46642 * 60.00205 * 8 6 4 12 12 C 1.46897 * 111.00127 * 123.95398 * 2 1 3 13 13 C 1.53001 * 109.46958 * 66.04684 * 12 2 1 14 14 C 1.53000 * 109.46923 * 174.54104 * 13 12 2 15 15 H 1.08996 * 109.46637 * 303.31347 * 14 13 12 16 16 C 1.53036 * 109.46245 * 63.29400 * 14 13 12 17 17 C 1.53121 * 109.28054 * 179.19392 * 16 14 13 18 18 C 1.53122 * 109.15703 * 302.34174 * 17 16 14 19 19 C 1.53034 * 109.27730 * 57.65709 * 18 17 16 20 20 N 1.46843 * 109.52249 * 300.81825 * 19 18 17 21 21 C 1.46904 * 110.99922 * 185.84139 * 20 19 18 22 22 H 1.08998 * 109.47322 * 59.99670 * 1 2 3 23 23 H 1.08998 * 109.47170 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46930 * 299.99691 * 1 2 3 25 25 H 1.09004 * 109.47282 * 173.95488 * 3 2 1 26 26 H 1.08999 * 109.47312 * 53.95788 * 3 2 1 27 27 H 0.97006 * 119.99265 * 359.97438 * 7 6 4 28 28 H 1.09000 * 109.47345 * 186.04244 * 12 2 1 29 29 H 1.08996 * 109.47589 * 306.04204 * 12 2 1 30 30 H 1.09003 * 109.47234 * 294.54251 * 13 12 2 31 31 H 1.09002 * 109.47260 * 54.54448 * 13 12 2 32 32 H 1.08998 * 109.50087 * 299.13497 * 16 14 13 33 33 H 1.09004 * 109.50848 * 59.21256 * 16 14 13 34 34 H 1.08996 * 109.52474 * 62.25022 * 17 16 14 35 35 H 1.09004 * 109.52506 * 182.37949 * 17 16 14 36 36 H 1.09006 * 109.49910 * 177.59352 * 18 17 16 37 37 H 1.08994 * 109.50479 * 297.67427 * 18 17 16 38 38 H 1.09000 * 109.46401 * 60.83622 * 19 18 17 39 39 H 1.09001 * 109.46349 * 180.80120 * 19 18 17 40 40 H 1.09002 * 109.46992 * 289.61396 * 21 20 19 41 41 H 1.09002 * 109.46975 * 49.61486 * 21 20 19 42 42 H 1.09004 * 109.46742 * 169.61386 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0738 1.5115 -2.0484 6 6 2.0267 3.3495 -1.5284 7 7 2.7119 4.0019 -0.6150 8 14 1.5829 4.1869 -3.1382 9 1 2.1150 5.5733 -3.1381 10 1 2.1755 3.4298 -4.2699 11 1 0.1057 4.2231 -3.2864 12 6 1.9954 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9703 14 6 2.2939 -3.0601 2.0810 15 1 3.3713 -2.8972 2.0587 16 6 1.7396 -2.6198 3.4379 17 6 2.3904 -3.4542 4.5447 18 6 2.1211 -4.9381 4.2795 19 6 2.6642 -5.3112 2.8983 20 7 2.0104 -4.4861 1.8746 21 6 2.4049 -4.9112 0.5249 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.0798 1.3444 0.1082 26 1 1.5612 1.9274 0.8309 27 1 2.9427 3.5669 0.2208 28 1 3.0797 -0.6611 1.1756 29 1 1.5612 -0.3873 2.0628 30 1 0.5493 -2.3590 1.0294 31 1 1.9825 -2.5958 0.0006 32 1 1.9639 -1.5652 3.5977 33 1 0.6600 -2.7691 3.4559 34 1 3.4654 -3.2747 4.5520 35 1 1.9675 -3.1731 5.5092 36 1 2.6180 -5.5397 5.0407 37 1 1.0477 -5.1245 4.3116 38 1 3.7400 -5.1376 2.8721 39 1 2.4614 -6.3637 2.7005 40 1 3.4470 -4.6439 0.3499 41 1 2.2866 -5.9910 0.4350 42 1 1.7736 -4.4140 -0.2116 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078645504.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:54 Heat of formation + Delta-G solvation = -11.567732 kcal Electronic energy + Delta-G solvation = -17886.858013 eV Core-core repulsion = 15286.968235 eV Total energy + Delta-G solvation = -2599.889778 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.45534 -36.78481 -33.72205 -33.29480 -32.11612 -28.52954 -26.80462 -26.58406 -25.13433 -23.29434 -22.55165 -21.02656 -20.07684 -19.62738 -16.69393 -16.01132 -15.38481 -15.06475 -14.62321 -14.38847 -14.28473 -13.83243 -13.67533 -13.20339 -13.09158 -12.70680 -12.28796 -12.20130 -11.77145 -11.72286 -11.32363 -11.23017 -11.14694 -10.83603 -10.80099 -10.72673 -10.57669 -10.30530 -10.20674 -10.07256 -9.93841 -8.63958 -8.35745 -8.35060 -7.28106 -6.34599 -4.02900 3.45978 3.48598 3.67029 3.81697 4.53864 4.66063 4.72411 4.80893 4.97848 5.01015 5.24096 5.34914 5.37676 5.41307 5.43753 5.48131 5.59055 5.66064 5.71961 5.78539 5.81406 5.87865 5.92730 6.00560 6.05471 6.13098 6.17417 6.26213 6.33557 6.49190 6.52883 6.73002 7.02225 7.04654 7.08774 7.14323 7.83677 8.03013 8.36258 8.61703 8.89802 9.67880 11.04569 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.045407 B = 0.004381 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.495138 B = 6389.475698 C = 6663.128552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.535 5.535 3 C 0.182 3.818 4 C -0.587 4.587 5 H 0.057 0.943 6 C 0.013 3.987 7 N -0.915 5.915 8 Si 1.073 2.927 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.288 1.288 12 C 0.056 3.944 13 C -0.109 4.109 14 C 0.088 3.912 15 H 0.039 0.961 16 C -0.114 4.114 17 C -0.122 4.122 18 C -0.116 4.116 19 C 0.056 3.944 20 N -0.539 5.539 21 C 0.022 3.978 22 H 0.072 0.928 23 H 0.048 0.952 24 H 0.009 0.991 25 H 0.018 0.982 26 H -0.021 1.021 27 H 0.266 0.734 28 H 0.062 0.938 29 H 0.023 0.977 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.071 0.929 40 H 0.025 0.975 41 H 0.062 0.938 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.155 -17.555 8.093 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.259 5.259 3 C 0.057 3.943 4 C -0.626 4.626 5 H 0.075 0.925 6 C -0.190 4.190 7 N -0.552 5.552 8 Si 0.901 3.099 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.215 1.215 12 C -0.073 4.073 13 C -0.147 4.147 14 C -0.020 4.020 15 H 0.057 0.943 16 C -0.152 4.152 17 C -0.160 4.160 18 C -0.154 4.154 19 C -0.072 4.072 20 N -0.264 5.264 21 C -0.126 4.126 22 H 0.091 0.909 23 H 0.067 0.933 24 H 0.028 0.972 25 H 0.036 0.964 26 H -0.003 1.003 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.044 0.956 41 H 0.081 0.919 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.349 -16.422 6.856 17.847 hybrid contribution 0.536 -0.958 1.578 1.922 sum -0.812 -17.380 8.434 19.335 Atomic orbital electron populations 1.22224 0.88737 0.99359 1.00686 1.62009 1.07106 1.16892 1.39908 1.19835 0.94560 0.83076 0.96870 1.21982 1.38698 0.99677 1.02211 0.92490 1.25862 0.94477 0.94720 1.03986 1.70798 1.36655 1.39898 1.07846 0.83490 0.76042 0.76046 0.74343 1.20853 1.21377 1.21477 1.22071 0.99623 0.93042 0.92583 1.21694 1.00928 0.94217 0.97846 1.21648 0.97641 0.87024 0.95720 0.94291 1.21686 1.00955 0.99346 0.93167 1.21600 1.00543 0.95172 0.98693 1.21580 1.01872 0.96284 0.95660 1.22079 0.95874 0.97259 0.92032 1.61927 1.58764 1.03171 1.02514 1.22412 0.98985 1.00579 0.90605 0.90909 0.93282 0.97215 0.96387 1.00312 0.92395 0.91954 0.95880 0.91435 0.90966 0.91188 0.91171 0.92403 0.91890 0.91859 0.91164 0.95219 0.91025 0.95637 0.91878 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.16 60.06 0.55 1.33 16 2 N -0.54 -12.00 4.75 -244.37 -1.16 -13.16 16 3 C 0.18 4.87 4.03 -4.97 -0.02 4.85 16 4 C -0.59 -17.05 8.52 -34.44 -0.29 -17.34 16 5 H 0.06 1.65 7.10 -52.49 -0.37 1.28 16 6 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 7 N -0.92 -28.35 13.65 55.43 0.76 -27.59 16 8 Si 1.07 25.65 29.90 -169.99 -5.08 20.57 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.06 1.03 4.53 -3.83 -0.02 1.01 16 13 C -0.11 -1.66 4.18 -26.73 -0.11 -1.77 16 14 C 0.09 1.16 1.92 -67.72 -0.13 1.03 16 15 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 16 C -0.11 -1.38 5.07 -26.65 -0.14 -1.52 16 17 C -0.12 -1.25 6.00 -26.61 -0.16 -1.41 16 18 C -0.12 -1.09 6.09 -26.65 -0.16 -1.25 16 19 C 0.06 0.57 5.46 -3.84 -0.02 0.55 16 20 N -0.54 -6.52 4.75 -234.93 -1.11 -7.63 16 21 C 0.02 0.25 8.89 60.07 0.53 0.78 16 22 H 0.07 1.59 6.86 -51.93 -0.36 1.23 16 23 H 0.05 0.85 6.42 -51.93 -0.33 0.52 16 24 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.02 0.51 7.80 -51.93 -0.40 0.10 16 26 H -0.02 -0.58 7.99 -51.93 -0.41 -1.00 16 27 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 28 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 29 H 0.02 0.42 6.80 -51.93 -0.35 0.07 16 30 H 0.07 1.04 6.74 -51.93 -0.35 0.69 16 31 H 0.07 1.15 6.27 -51.93 -0.33 0.82 16 32 H 0.07 0.89 6.68 -51.93 -0.35 0.55 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.65 8.01 -51.93 -0.42 0.23 16 40 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 41 H 0.06 0.60 7.98 -51.93 -0.41 0.18 16 42 H 0.08 0.90 6.52 -51.93 -0.34 0.56 16 LS Contribution 317.26 15.07 4.78 4.78 Total: -1.00 -30.88 317.26 -9.62 -40.50 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -7.73 Total: -4.01 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -0.06 Total: -13.45 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -1.52 Total: -48.39 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.08 Total: 20.57 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.88 -9.62 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645504.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.931 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds