Wall clock time and date at job start Thu Apr 9 2020 12:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99885 * 2 1 4 4 C 1.50698 * 109.47255 * 66.04912 * 3 2 1 5 5 H 1.07998 * 119.99588 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00296 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99700 * 0.02562 * 6 4 3 8 8 Si 1.86790 * 120.00256 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47502 * 90.00218 * 8 6 4 10 10 H 1.48505 * 109.47136 * 329.99918 * 8 6 4 11 11 H 1.48503 * 109.47003 * 210.00541 * 8 6 4 12 12 C 1.46900 * 110.99517 * 236.04821 * 2 1 3 13 13 C 1.53006 * 109.47283 * 293.95004 * 12 2 1 14 14 C 1.53001 * 109.47094 * 185.14157 * 13 12 2 15 15 H 1.09004 * 109.46240 * 55.10759 * 14 13 12 16 16 C 1.53039 * 109.46368 * 295.13021 * 14 13 12 17 17 C 1.53117 * 109.27596 * 180.80594 * 16 14 13 18 18 C 1.53123 * 109.16239 * 57.65375 * 17 16 14 19 19 C 1.53034 * 109.27645 * 302.34508 * 18 17 16 20 20 N 1.46843 * 109.45793 * 175.08530 * 14 13 12 21 21 C 1.46898 * 111.00242 * 305.85443 * 20 14 13 22 22 H 1.08990 * 109.47298 * 59.99788 * 1 2 3 23 23 H 1.09004 * 109.47114 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46574 * 299.99635 * 1 2 3 25 25 H 1.08998 * 109.47155 * 306.04425 * 3 2 1 26 26 H 1.09002 * 109.46558 * 186.04937 * 3 2 1 27 27 H 0.97005 * 119.99999 * 359.97438 * 7 6 4 28 28 H 1.08998 * 109.47523 * 53.95386 * 12 2 1 29 29 H 1.09004 * 109.46883 * 173.95326 * 12 2 1 30 30 H 1.08996 * 109.46723 * 305.14542 * 13 12 2 31 31 H 1.08994 * 109.46686 * 65.14360 * 13 12 2 32 32 H 1.09000 * 109.50146 * 300.74494 * 16 14 13 33 33 H 1.08995 * 109.50205 * 60.86567 * 16 14 13 34 34 H 1.08997 * 109.51864 * 177.55764 * 17 16 14 35 35 H 1.08998 * 109.52480 * 297.68309 * 17 16 14 36 36 H 1.09003 * 109.50134 * 62.28043 * 18 17 16 37 37 H 1.08998 * 109.50176 * 182.40434 * 18 17 16 38 38 H 1.09005 * 109.46143 * 179.19597 * 19 18 17 39 39 H 1.09003 * 109.46046 * 299.17493 * 19 18 17 40 40 H 1.08999 * 109.46937 * 66.84909 * 21 20 14 41 41 H 1.09001 * 109.47474 * 186.85171 * 21 20 14 42 42 H 1.09001 * 109.46937 * 306.85216 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5114 2.0484 6 6 2.0277 3.3491 1.5289 7 7 2.7128 4.0016 0.6153 8 14 1.5840 4.1864 3.1387 9 1 2.6609 3.9493 4.1333 10 1 0.3061 3.6294 3.6505 11 1 1.4321 5.6461 2.9119 12 6 1.9954 -0.7660 -1.1376 13 6 1.6314 -2.2427 -0.9704 14 6 2.2872 -3.0591 -2.0859 15 1 3.3616 -2.8751 -2.0870 16 6 1.6975 -2.6441 -3.4358 17 6 2.3421 -3.4776 -4.5467 18 6 2.1073 -4.9635 -4.2609 19 6 2.6852 -5.3111 -2.8871 20 7 2.0357 -4.4879 -1.8590 21 6 2.4652 -4.8909 -0.5133 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 1.5611 1.9273 -0.8309 26 1 3.0797 1.3443 -0.1083 27 1 2.9436 3.5666 -0.2205 28 1 1.5610 -0.3872 -2.0628 29 1 3.0797 -0.6611 -1.1757 30 1 1.9874 -2.5972 -0.0032 31 1 0.5489 -2.3583 -1.0239 32 1 0.6210 -2.8151 -3.4305 33 1 1.8979 -1.5871 -3.6109 34 1 1.8939 -3.2158 -5.5051 35 1 3.4129 -3.2765 -4.5783 36 1 1.0372 -5.1709 -4.2686 37 1 2.6005 -5.5635 -5.0256 38 1 2.5070 -6.3653 -2.6744 39 1 3.7576 -5.1162 -2.8844 40 1 1.8316 -4.4074 0.2303 41 1 2.3812 -5.9731 -0.4139 42 1 3.5015 -4.5911 -0.3577 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078645507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:56 Heat of formation + Delta-G solvation = -32.182904 kcal Electronic energy + Delta-G solvation = -17886.294523 eV Core-core repulsion = 15285.510804 eV Total energy + Delta-G solvation = -2600.783719 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.46429 -38.48507 -35.26261 -34.53346 -33.61009 -29.87473 -28.64329 -27.62329 -26.77315 -24.75383 -23.77847 -22.48921 -21.43181 -20.63891 -18.89709 -17.19910 -16.58698 -16.34017 -16.13549 -15.63169 -15.47983 -15.33380 -15.04344 -14.72705 -14.31863 -13.99493 -13.70607 -13.44280 -13.26557 -12.89687 -12.85582 -12.63252 -12.59612 -12.46037 -12.31200 -12.13291 -11.91316 -11.65080 -11.62566 -11.29282 -11.05375 -10.77763 -10.58762 -9.30552 -9.14334 -8.70176 -6.40779 1.53122 1.62549 1.80760 2.55028 2.83327 3.12518 3.26038 3.76066 3.84040 3.94930 4.02247 4.20895 4.25827 4.35548 4.36923 4.47984 4.52552 4.54994 4.59165 4.63218 4.66021 4.76808 4.81589 4.87914 4.93632 4.98910 5.01835 5.04477 5.05637 5.12239 5.21038 5.25130 5.28420 5.45064 5.76033 5.96072 6.10022 6.17085 6.35359 6.39832 6.61904 7.40170 8.68621 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.045439 B = 0.004376 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.057354 B = 6396.413235 C = 6662.259572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.545 5.545 3 C 0.193 3.807 4 C -0.600 4.600 5 H 0.056 0.944 6 C -0.038 4.038 7 N -0.938 5.938 8 Si 1.125 2.875 9 H -0.272 1.272 10 H -0.268 1.268 11 H -0.282 1.282 12 C 0.059 3.941 13 C -0.094 4.094 14 C 0.094 3.906 15 H 0.029 0.971 16 C -0.113 4.113 17 C -0.121 4.121 18 C -0.112 4.112 19 C 0.053 3.947 20 N -0.545 5.545 21 C 0.022 3.978 22 H 0.008 0.992 23 H 0.083 0.917 24 H 0.055 0.945 25 H -0.044 1.044 26 H -0.003 1.003 27 H 0.252 0.748 28 H 0.026 0.974 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.027 0.973 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 -19.210 -7.922 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.269 5.269 3 C 0.066 3.934 4 C -0.638 4.638 5 H 0.074 0.926 6 C -0.235 4.235 7 N -0.576 5.576 8 Si 0.946 3.054 9 H -0.198 1.198 10 H -0.193 1.193 11 H -0.208 1.208 12 C -0.069 4.069 13 C -0.132 4.132 14 C -0.015 4.015 15 H 0.047 0.953 16 C -0.151 4.151 17 C -0.159 4.159 18 C -0.150 4.150 19 C -0.075 4.075 20 N -0.270 5.270 21 C -0.126 4.126 22 H 0.026 0.974 23 H 0.101 0.899 24 H 0.074 0.926 25 H -0.026 1.026 26 H 0.015 0.985 27 H 0.062 0.938 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.046 0.954 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -2.056 -18.133 -6.696 19.439 hybrid contribution 0.782 -0.489 -1.699 1.933 sum -1.274 -18.622 -8.396 20.466 Atomic orbital electron populations 1.22218 0.87315 1.01270 0.99742 1.61955 1.08463 1.14401 1.42072 1.19558 0.93183 0.85341 0.95319 1.22321 1.38433 1.00164 1.02864 0.92599 1.27478 0.93542 0.95819 1.06673 1.70905 1.38411 1.40232 1.08039 0.82835 0.77075 0.74966 0.70549 1.19801 1.19308 1.20757 1.22111 0.98896 0.94606 0.91321 1.21538 1.01163 0.91954 0.98559 1.21511 0.96838 0.87805 0.95333 0.95337 1.21660 1.00821 0.99184 0.93428 1.21597 1.00380 0.95572 0.98310 1.21580 1.01921 0.95764 0.95745 1.22200 0.95613 0.97810 0.91876 1.61951 1.59071 1.02761 1.03232 1.22437 0.98216 1.01836 0.90144 0.97359 0.89866 0.92602 1.02624 0.98543 0.93845 0.95578 0.92942 0.91484 0.91151 0.91351 0.92345 0.90736 0.92543 0.91278 0.89796 0.89388 0.95439 0.91394 0.89889 0.96159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.72 9.16 127.69 1.17 2.89 16 2 N -0.55 -24.65 4.75 -927.03 -4.41 -29.06 16 3 C 0.19 10.63 4.03 85.56 0.34 10.97 16 4 C -0.60 -35.28 8.52 25.60 0.22 -35.06 16 5 H 0.06 3.25 7.10 -2.91 -0.02 3.23 16 6 C -0.04 -2.25 5.46 84.65 0.46 -1.79 16 7 N -0.94 -59.16 13.65 21.45 0.29 -58.87 16 8 Si 1.13 51.18 29.90 68.60 2.05 53.23 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 C 0.06 2.19 4.58 86.31 0.40 2.59 16 13 C -0.09 -2.79 4.22 30.60 0.13 -2.66 16 14 C 0.09 2.39 1.90 44.94 0.09 2.47 16 15 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 16 C -0.11 -2.63 5.10 30.65 0.16 -2.47 16 17 C -0.12 -2.25 6.00 30.67 0.18 -2.06 16 18 C -0.11 -1.81 6.09 30.65 0.19 -1.62 16 19 C 0.05 0.95 5.46 86.32 0.47 1.42 16 20 N -0.55 -12.20 4.75 -897.15 -4.26 -16.46 16 21 C 0.02 0.45 8.88 127.69 1.13 1.58 16 22 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 23 H 0.08 2.76 6.41 -2.38 -0.02 2.74 16 24 H 0.06 2.42 6.86 -2.39 -0.02 2.40 16 25 H -0.04 -2.57 7.99 -2.39 -0.02 -2.59 16 26 H 0.00 -0.20 7.80 -2.39 -0.02 -0.22 16 27 H 0.25 16.19 7.22 -92.70 -0.67 15.52 16 28 H 0.03 0.95 6.82 -2.39 -0.02 0.94 16 29 H 0.05 2.02 7.93 -2.38 -0.02 2.00 16 30 H 0.07 2.08 6.19 -2.39 -0.01 2.06 16 31 H 0.07 2.05 6.72 -2.39 -0.02 2.04 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.47 6.72 -2.39 -0.02 1.45 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 1.32 8.00 -2.38 -0.02 1.30 16 39 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.07 1.51 6.53 -2.39 -0.02 1.50 16 41 H 0.08 1.38 7.97 -2.39 -0.02 1.36 16 42 H 0.02 0.43 8.11 -2.39 -0.02 0.42 16 Total: -1.00 -66.31 317.29 -0.33 -66.64 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.05 Total: 8.26 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 4.94 Total: -23.74 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -8.37 Total: -104.39 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.05 Total: 53.23 kcal Total: -66.31 -0.33 -66.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.456 kcal (2) G-P(sol) polarization free energy of solvation -66.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds